Infection of South American coatis (Nasua nasua) with highly pathogenic avian influenza H5N1 virus displaying mammalian adaptive mutations.

Deadly outbreaks among poultry, wild birds, and carnivorous mammals by the highly pathogenic H5N1 virus of the clade 2.3.4.4b have been reported in South America. The increasing virus incidence in various mammal species poses a severe zoonotic and pandemic threat. In Uruguay, the clade 2.3.4.4b viruses were first detected in February 2023, affecting wild birds and backyard poultry. Three months after the first reported case in Uruguay, the disease affected a population of 23 coatis (Nasua) in an ecological park. Most animals became infected, likely directly or indirectly from wild birds in the park, and experienced sudden death. Five animals from the colony survived, and four of them developed antibodies. The genomes of the H5N1 strains infecting coatis belonged to the B3.2 genotype of the clade 2.3.4.4b. Genomes from coatis were closely associated with those infecting backyard poultry, but transmission likely occurred through wild birds. Notable, two genomes have a 627K substitution in the RNA polymerase PB2 subunit, a hallmark amino acid linked to mammalian adaptation. Our findings support the ability of the avian influenza virus of the 2.3.4.4b clade to infect and transmit among terrestrial mammals with high pathogenicity and undergo rapid adaptive changes. It also highlights the coatis' ability to develop immunity and naturally clear the infection.

Combined effects of climate and land-use changes on the alpha and beta functional diversities of terrestrial mammals in China.

Climate and land-use changes are predicted to impact biodiversity, threatening ecosystem services and functions. However, their combined effects on the functional diversity of mammals at the regional scale remain unclear, especially at the beta level. Here, we use projected climate and land-use changes in China to investigate their potential effects on the alpha and beta functional diversities of terrestrial mammals under low- and high-emission scenarios. In the current projection, we showed strong positive spatial correlations between functional richness and species richness. Functional evenness (FEve), functional specialization (FSpe), and functional originality (FOri) decreased with species richness, and functional divergence (FDiv) increased first and then plateaued. Functional beta diversity was dominated by its nestedness component, in contrast to the taxonomic facet. Potential changes in species richness are more strongly influenced by land-use change under the low-emission scenario, while under the high-emission scenario, they are more strongly influenced by climate change. Changes in functional richness (FRic) were inconsistent with those in species richness, with a magnitude of decreases greater than predicted from species richness. Moreover, mammal assemblages showed potential functional differentiation (FD) across the country, and the trends exceeded those towards taxonomic differentiation (TD). Our findings help us understand the processes underlying biodiversity responses to global changes on multiple facets and provide new insight for conservation plans.

Reproductive toxicity and related mechanisms of micro(nano)plastics in terrestrial mammals: Review of current evidence.

Micro(nano)plastics (MNPs) have been detected in various ecological environments and are widely used due to their stable properties, raising widespread concern about their potential human reproductive toxicity. Currently, infertility affects approximately 10-30% of couples of reproductive age globally. MNPs, as environmental pollutants, have been shown to exhibit reproductive toxicity through intrinsic mechanisms or as carriers of other hazardous substances. Numerous studies have established that MNPs of varying sizes and types can penetrate biological barriers, and enter tissues and even organelles of organisms through four main routes: dietary ingestion, inhalation, dermal contact, and medical interventions. However, historical research on the toxic effects of MNPs on reproduction mainly focused on lower and aquatic species. We conducted an inclusive review of studies involving terrestrial mammals, revealing that MNPs can induce reproductive toxicity via various mechanisms such as oxidative stress, inflammation, fibrosis, apoptosis, autophagy, disruption of intestinal flora, endocrine disruption, endoplasmic reticulum stress, and DNA damage. In terrestrial mammals, reproductive toxicity predominantly manifests as disruption in the blood-testis barrier (BTB), impaired spermatogenesis, sperm malformation, sperm DNA damage, reduced sperm fertilizing capacity, compromised oocyte maturation, impaired follicular growth, granulosa cell apoptosis, diminished ovarian reserve function, uterine and ovarian fibrosis, and endocrine disruption, among other effects. Furthermore, MNPs can traverse the maternal-fetal interface, potentially impacting offspring reproductive health. To gain a comprehensive understanding of the potential reproductive toxicity and underlying mechanisms of MNPs with different sizes, polymer types, shapes, and carried toxins, as well as to explore effective protective interventions for mitigating reproductive damage, further in-depth animal studies, clinical trials, and large-scale epidemiological studies are urgently required.

Osteological profiling of femoral diaphysis and neck in aquatic, semiaquatic, and terrestrial carnivores and rodents: effects of body size and locomotor habits.

The increased limb bone density documented previously for aquatic tetrapods has been proposed to be an adaptation to overcome buoyancy during swimming and diving. It can be achieved by increasing the amount of bone deposition or by reducing the amount of bone resorption, leading to cortical thickening, loss of medullary cavity, and compaction of trabecular bone. The present study examined the effects of locomotor habit, body size, and phylogeny on the densitometric, cross-sectional, and biomechanical traits of femoral diaphysis and neck in terrestrial, semiaquatic, and aquatic carnivores, and in terrestrial and semiaquatic rodents (12 species) by using peripheral quantitative computed tomography, three-point bending, and femoral neck loading tests. Groupwise differences were analyzed with the univariate generalized linear model and the multivariate linear discriminant analysis supplemented with hierarchical clustering. While none of the individual features could separate the lifestyles or species adequately, the combinations of multiple features produced very good or excellent classifications and clusterings. In the phocid seals, the aquatic niche allowed for lower femoral bone mineral densities than expected based on the body mass alone. The semiaquatic mammals mostly had high bone mineral densities compared to the terrestrial species, which could be considered an adaptation to overcome buoyancy during swimming and shallow diving. Generally, it seems that different osteological properties at the levels of mineral density and biomechanics could be compatible with the adaptation to aquatic, semiaquatic, or terrestrial niches.

Regiospecific analysis of lipidome in the brain from mammals of land and aquatic habitats-by liquid chromatography-mass spectrometry.

The brain is a complex organ demonstrated by the occurrence of specific types of functional lipids. Despite some studies focusing on providing the animal brain lipid signature, there are limited studies focusing on the comprehensive and regiospecific characterization of multiple animal brain lipidome. Herein we characterized about 294 lipid molecular species from six different lipid classes in different portions of the brain after fixation from mammals of different habitats, fully-aquatic (n = 6), semi-aquatic (n = 6), and terrestrial (n = 4), using liquid chromatography-mass spectrometry. The untargeted brain lipid profiling revealed a significant difference in total lipid levels between fully-aquatic, semi-aquatic, and terrestrial mammals. The polyunsaturated fatty acids and cholesterol esters are abundant in brain tissue of semi-aquatic followed by fully-aquatic mammals whereas phosphatidylethanolamines are profoundly high in terrestrial species. The regiospecific analysis revealed a predominance of sphingolipids in all the groups but no significant differences were observed between the different portions of the brain such as the cerebellum, cortex, pons, spinal cord, and thalamus. Interestingly the multivariate analysis showed almost the same lipid compositions in the spinal cord and thalamus of terrestrial mammals. Overall, this is the first report to compare the comprehensive brain-lipidome among different mammalian groups inhabiting three distinct habitats. These results indicate that the brain lipid composition is specific to the animal habitat.

Highly Pathogenic Avian Influenza A(H5N1) Virus Clade 2.3.4.4b Infections in Wild Terrestrial Mammals, United States, 2022.

We describe the pathology of natural infection with highly pathogenic avian influenza A(H5N1) virus of Eurasian lineage Goose/Guangdong clade 2.3.4.4b in 67 wild terrestrial mammals throughout the United States during April 1‒July 21, 2022. Affected mammals include 50 red foxes (Vulpes vulpes), 6 striped skunks (Mephitis mephitis), 4 raccoons (Procyon lotor), 2 bobcats (Lynx rufus), 2 Virginia opossums (Didelphis virginiana), 1 coyote (Canis latrans), 1 fisher (Pekania pennanti), and 1 gray fox (Urocyon cinereoargenteus). Infected mammals showed primarily neurologic signs. Necrotizing meningoencephalitis, interstitial pneumonia, and myocardial necrosis were the most common lesions; however, species variations in lesion distribution were observed. Genotype analysis of sequences from 48 animals indicates that these cases represent spillover infections from wild birds.

Zoos as Sentinels? A Meta-Analysis of Seroprevalence of Terrestrial Mammalian Viruses in Zoos.

The One Health framework links animal, human, and environmental health, and focuses on emerging zoonotic pathogens. Understanding the interface between wildlife and human activity is critical due to the unpredictable nature of spillover of zoonotic pathogens from animals to humans. Zoos are important partners in One Health because of their contributions to education, conservation, and animal health monitoring. In addition, the housing of wildlife in captive and semi-natural settings makes zoos, especially relevant for detecting animal-related pathogens. A first step to determine the utility of zoos in contributing to pathogen surveillance is to survey the peer-reviewed literature. We, therefore, retrieved data from the previous 20 years and performed a meta-analysis to determine global patterns of viral seroprevalence in mammals housed in zoo collections from peer-reviewed literature. We analysed 50 articles, representing a total of 11,300 terrestrial mammals. Increased prevalence was found in viruses strictly targeting specific host taxonomy, especially in viruses transmitted through direct contact. Potentially complex patterns with geography were also identified, despite uneven sampling. This research highlights the role zoos could play in public health and encourages future standardized epidemiological surveillance of zoological collections.

A Demi-Decade of Mammal Research: A Rapid Assessment within the Heart of Borneo in Sabah.

Sabah contributes 4.2 million hectares to the total Heart of Borneo (HoB) areas. Some of the forest reserves in the HoB are newly gazetted as Totally Protected Forest. Hence, their mammal diversity has to be comprehensively documented. This study aims to record the presence of terrestrial mammal species, and assess the prevalence of poaching in selected forest reserves within the Sabah HoB area. A total of 15 forest reserves were surveyed within a 5-year timeframe which recorded 60 terrestrial mammal species, including 21 Bornean endemics. The variation in total enumerated mammal species in the study sites may be derived from unequal sampling efforts, geographical factors and anthropogenic influences. The intensity of poaching within the study sites is high. Though this study is a rapid assessment, it created baseline information for mammal diversity in some of the least studied forest reserves in Sabah, important for conservation of its terrestrial mammals.

Sabah menyumbang 4.2 juta hektar kepada keluasan kawasan Heart of Borneo (HoB). Beberapa hutan simpan dalam kawasan HoB baru sahaja diwartakan sebagai Kawasan Terlindung Sepenuhnya. Justeru, kepelbagaian mamalia dalam kawasan hutan simpan tersebut perlu didokumentasi secara menyeluruh. Kajian ini bertujuan merekod kewujudan mamalia daratan dan menilai kelaziman aktiviti pemburuan haram di hutan simpan terpilih dalam kawasan HoB di Sabah. Sejumlah 15 hutan simpan telah ditinjau dalam tempoh masa lima tahun. Sebanyak 60 spesies mamalia daratan termasuk 21 spesies endemik di Borneo telah direkodkan. Perbezaaan jumlah spesies mamalia yang direkod di hutan simpan terpilih mungkin disebabkan oleh ketidaksamaan usaha pensampelan, faktor geografi dan tekanan antropogenik. Intensiti pemburuan haram dalam kawasan kajian adalah tinggi. Walaupun kajian ini hanyalah tinjauan pantas, namun ia menghasilkan maklumat asas kepelbagaian mamalia dalam hutan simpan yang kurang diterokai serta menunjukkan kebergunaan pendekatan tinjauan pantas dalam memulihara mamalia daratan.

Medium to large-sized mammals of an urban protected area and its ecological corridor in Rio de Janeiro City, Brazil / Mamíferos de médio a grande porte de uma Unidade de Conservação urbana e seu corredor ecológico na cidade do Rio de Janeiro, Brasil

Abstract Protected areas play a fundamental role in the preservation of species, environmental education, and ecosystem services maintenance. Most of the world population live in urban areas, which highlight the importance of preserved areas in urban centers. However, many urban protected areas in Brazil lack species surveys, which limits biodiversity conservation and implementation of management plans. In this study, we surveyed the species of medium and large mammals of Chico Mendes Municipal Natural Park (MNP) and Canal das Taxas corridor through camera traps, thus providing the first comprehensive in situ survey of terrestrial mammals for the area. We also verified whether there was mammalian fauna exchange between the Chico Mendes and Marapendi MNPs through the vegetation corridor formed by the Canal das Taxas. Between November 2020 and July 2021, with a sampling effort of 1,334 trap-days, we recorded five native and five exotic species in the studied areas, including one Vulnerable species in the Municipality and State of Rio de Janeiro (Cuniculus paca). We also confirmed that Canal das Taxas works as a wildlife corridor for native species. Finally, we highlight that species checklists based on secondary information for the region are of limited usefulness and recommend in situ surveys even in small, urban protected areas of Rio de Janeiro city.

Resumo As áreas protegidas têm papel fundamental na preservação das espécies, na educação ambiental e na manutenção dos serviços ecossistêmicos. A maior parte da população mundial vive em áreas urbanas, o que evidencia a importância das áreas preservadas nos centros urbanos. No entanto, muitas áreas protegidas urbanas no Brasil carecem de levantamentos de espécies, o que limita a conservação da biodiversidade e a implementação de planos de manejo. Neste estudo, inventariamos as espécies de mamíferos de médio e grande porte do Parque Natural Municipal Chico Mendes e do corredor do Canal das Taxas por meio de armadilhas fotográficas, fornecendo assim o primeiro levantamento in situ abrangente de mamíferos terrestres para a área. Também verificamos se houve intercâmbio de fauna de mamíferos entre os parques Chico Mendes e Marapendi através do Canal das Taxas. Entre novembro de 2020 e julho de 2021, com um esforço amostral de 1.334 armadilhas-dia, registramos cinco espécies nativas e cinco espécies exóticas nas áreas de estudo, incluindo uma espécie Vulnerável no município e estado do Rio de Janeiro (Cuniculus paca). Confirmamos que o Canal das Taxas funciona como um corredor de fauna para espécies nativas. Por fim, ressaltamos que listas de espécies baseadas em informações secundárias para a região são de utilidade limitada e recomendamos levantamentos in situ, mesmo em pequenas Unidades de Conservação urbanas da cidade do Rio de Janeiro.

A risk assessment review of mercury exposure in Arctic marine and terrestrial mammals.

There has been a considerable number of reports on Hg concentrations in Arctic mammals since the last Arctic Monitoring and Assessment Programme (AMAP) effort to review biological effects of the exposure to mercury (Hg) in Arctic biota in 2010 and 2018. Here, we provide an update on the state of the knowledge of health risk associated with Hg concentrations in Arctic marine and terrestrial mammal species. Using available population-specific data post-2000, our ultimate goal is to provide an updated evidence-based estimate of the risk for adverse health effects from Hg exposure in Arctic mammal species at the individual and population level. Tissue residues of Hg in 13 species across the Arctic were classified into five risk categories (from No risk to Severe risk) based on critical tissue concentrations derived from experimental studies on harp seals and mink. Exposure to Hg lead to low or no risk for health effects in most populations of marine and terrestrial mammals, however, subpopulations of polar bears, pilot whales, narwhals, beluga and hooded seals are highly exposed in geographic hotspots raising concern for Hg-induced toxicological effects. About 6% of a total of 3500 individuals, across different marine mammal species, age groups and regions, are at high or severe risk of health effects from Hg exposure. The corresponding figure for the 12 terrestrial species, regions and age groups was as low as 0.3% of a total of 731 individuals analyzed for their Hg loads. Temporal analyses indicated that the proportion of polar bears at low or moderate risk has increased in East/West Greenland and Western Hudson Bay, respectively. However, there remain numerous knowledge gaps to improve risk assessments of Hg exposure in Arctic mammalian species, including the establishment of improved concentration thresholds and upscaling to the assessment of population-level effects.

Optimised ICP-MS quantification method for using animal faeces as a measure of protected area ecosystem health.

Pollution is a key threat to biodiversity and ecosystem health within protected areas. Using a non-invasive, multi-matrix approach, sediment, vegetation and faecal material from lion (Panthera leo) and giraffe (Giraffa camelopardalis) were collected and assessed for the simultaneous quantification of 20 trace elements using an optimised method for Inductively Coupled Plasma--Mass Spectrometry (ICP-MS). Method Linearity was confirmed over an analytical range of 0.1-50 mg/kg for aluminium (Al) and iron (Fe); 0.4-400 µg/kg for vanadium (V), cobalt (Co), molybdenum (Mo), and cadmium (Cd); 0.5-5 µg/kg for mercury (Hg); and 1-1 000 µg/kg for elements arsenic (As), boron (B), barium (Ba), chromium (Cr), copper (Cu), manganese (Mn), nickel (Ni), lead (Pb), antimony (Sb), selenium (Se), tin (Sn), strontium (Sr) and zinc (Zn). Coefficient of determination (R2) was above 0.99 for all elements. Accuracy (% recovery) and precision (% RSD) of replicate measurements for certified reference material controls fell within 20% of expected value at lower concentrations and 15% at higher concentrations for all elements except Al. Results for instrument and method limit of detections (LOD), method limit of quantification (LOQ) and expanded uncertainty were satisfactory. Preliminary data indicate As, Cd, Cr, Cu, Hg, Ni, Pb, Se, and Zn were present in all matrices evaluated. This raises concerns regarding the combined action of multiple elements at concentrations that can adversely affect ecosystem and wildlife integrity.•Sample quantity is reduced due to the power and sensitivity of ICP-MS.•The optimised method is capable of detecting differences in trace element concentrations over large orders of magnitude in animal faeces containing different amounts of organic content.•The method can be applied to the quantification of essential and potentially toxic elements in faeces across a wide range of terrestrial species.

Scale-dependent effects of niche specialisation: The disconnect between individual and species ranges.

One of the most general expectations of species range dynamics is that widespread species tend to have broader niches. However, it remains unclear how this relationship is expressed at different levels of biological organisation, which involve potentially distinctive processes operating at different spatial and temporal scales. Here, we show that range sizes of terrestrial non-volant mammals at the individual and species level show contrasting relationships with two ecological niche dimensions: diet and habitat breadth. While average individual home range size appears to be mainly shaped by the interplay of diet niche breadth and body mass, species geographical range size is primarily related to habitat niche breadth but not to diet niche breadth. Our findings suggest that individual home range size is shaped by the trade-off between energetic requirements, movement capacity and trophic specialisation, whereas species geographical range size is related to the ability to persist under various environmental conditions.

Current and historical nephric and hepatic mercury concentrations in terrestrial mammals in Poland and other European countries.

The long-term anthropogenic release of mercury (Hg) into the environment has led to contamination of the biosphere, with all forms of Hg showing toxic effects and the ability to accumulate in organisms. Since the 1970s, efforts have been made in Western Europe to reduce Hg emissions and for the economic use of Hg, leading to a reduction in Hg exposure to humans and entire ecosystems. The purpose of this research was to present the total mercury (THg) burden in three mustelids (the piscivorous Eurasian otter and American mink, and the invertebrativorous European badger) inhabiting north-western Poland (mostly floodplains) and other European countries (literature data). Moreover, we wanted to investigate whether reductions in the environmental Hg burden in Europe have resulted in reductions in liver and kidney levels in wild terrestrial mammals (Eurasian otter, wild boar, red deer, roe deer, cervids, leporids, rodents, and ecotrophic groups: piscivorous mustelids, non-mustelids whose diets include aquatic prey, canids and other carnivores, omnivores, herbivores), between samples collected before and after 2000. We revealed significantly higher nephric THg levels in roadkilled than in trapped American minks. As roadkilled piscivorous mustelids from the same floodplain had similar hepatic and nephric THg concentrations, we suggest that the European research on Hg ecotoxicology should more often use alien American mink instead of the protected Eurasian otter. Badgers inhabiting Polish and other European floodplains bioaccumulated higher amounts of THg than those from other areas, and as such, may be recommended as bioindicator of mercury soil contamination. Our analysis of abundant data on mammalian hepatic and nephric THg concentrations (excluding non-piscivores mustelids) showed that in 12 of 21 cases, Hg concentrations had dropped significantly since 2000. This data signals a reduction in Hg contamination in terrestrial mammals, such as the Eurasian otter, and may be reason for cautious optimism.

An experimental approach to evaluate the potential of drones in terrestrial mammal research: a gregarious ungulate as a study model.

Research on the use of unmanned aircraft systems (UAS) in wildlife has made remarkable progress recently. Few studies to date have experimentally evaluated the effect of UAS on animals and have usually focused primarily on aquatic fauna. In terrestrial open arid ecosystems, with relatively good visibility to detect animals but little environmental noise, there should be a trade-off between flying the UAS at high height above ground level (AGL) to limit the disturbance of animals and flying low enough to maintain count precision. In addition, body size or social aggregation of species can also affect the ability to detect animals from the air and their response to the UAS approach. To address this gap, we used a gregarious ungulate, the guanaco (Lama guanicoe), as a study model. Based on three types of experimental flights, we demonstrated that (i) the likelihood of miscounting guanacos in images increases with UAS height, but only for offspring and (ii) higher height AGL and lower UAS speed reduce disturbance, except for large groups, which always reacted. Our results call into question mostly indirect and observational previous evidence that terrestrial mammals are more tolerant to UAS than other species and highlight the need for experimental and species-specific studies before using UAS methods.

Diversidad y actividad horaria de mamíferos medianos y grandes registrados con cámaras trampa en el Parque Nacional Tingo María, Huánuco, Perú

La mastofauna del Parque Nacional Tingo María (PNTM) es conocida principalmente por entrevistas a pobladores locales. Este artículo presenta una lista de mamíferos medianos y grandes en base a evaluaciones con cámaras trampa y su verificación con entrevistas. Las evaluaciones se realizaron entre diciembre del 2014 y noviembre del 2018, con un esfuerzo de 2970 trampas cámara/día, consiguiéndose 1640 registros independientes. Se registró 19 especies silvestres, cuatro de las cuales son nuevos registros para el PNTM (la zarigüeyita acuática Chironectes minimus, el margay Leopardus wiedii, la tigrina Leopardus tigrinus y el osito cangrejero Procyon cancrivorus), tres son nuevos para las yungas peruanas (L. wiedii, el ronsoco Hydrochoerus hydrochaeris y la nutria Lontra longicaudis) y dos (H. hydrochaeris y L. wiedii) tienen el récord de altitud en el Perú. Se elaboró patrones de actividad horaria para las nueve especies con más de 10 registros. Ocho de ellos coinciden con lo publicado anteriormente, mientras que el patrón conseguido para el machetero Dynomis branicki es el primero elaborado en condiciones de silvestría. Tanto la presencia de varias especies de predadores como la normalidad de los patrones de actividad encontrados sugieren un buen estado de conservación del bosque en el PNTM. En conclusión, el muestreo con cámaras trampapermitió la obtención de una lista confiable y bastante completa de los mamíferos medianos y grandes de hábitos terrestres del PNTM, además de datos sobre su distribución y ecología.

The mammal fauna of the Parque Nacional Tingo María (PNTM) mainly is known for local people interviews. In this work, using camera traps and its verification by interviews to local people we report medium and large mammals list of the PNTM. Evaluations were realized between December 2014 and November 2018. Sampling effort was of 2970 camera traps/day, with 1640 independent records. Nineteen wild species were recorded, four of which were new reports to the PNTM (the water opossum Chironectes minimus, the margay Leopardus wiedii, the Northern tiger cat Leopardus tigrinus and the crab-eating raccoon Procyon cancrivorus), three were new reports for the Peruvian yungas (L. wiedii, the capybara Hydrochoerus hydrochaeris and the Neotropical otter Lontra longicaudis) and two (H. hydrochaeris and L. wiedii) have been registered as its higher altitude record in Peru. Activity patterns were elaborated for the nine species with more than 10 records. Eight of them are coincided with the previously published. Activity pattern of pacarana (Dynomis branicki) is the first one elaborated in wild conditions. The presence of several predator species and normal activity patterns, would be suggest a good state of forest conservation in the PNTM. In conclusion, the sampling using camera traps allow to obtain a reliable and fairly complete list of the medium and large terrestrial mammals of the PNTM, as well as data on their distribution and ecology.

Geographic distribution ranges of terrestrial mammal species in the 1970s.

Here we provide geographic distribution ranges for 205 species of terrestrial non-volant mammals in the 1970s. We selected terrestrial non-volant mammals because they are among the most studied groups, have greater availability of historical distribution data for the 1970s decade, and also show the largest range contractions compared to other taxonomic groups. Species belong to 52 families and 16 orders. Range maps were extracted from scientific literature including published papers, books, and action plans. For Australian species, due to the absence of published maps, we collated occurrence data from individual data sets (maintained by museums and government agencies) and converted these into polygonal range maps. Taxonomic and geographic biases towards more studied (charismatic) species are inevitably present. Among the most abundant orders, the highest percentage representation is for Carnivora (55 species, corresponding to 21% of species in the order), Cetartiodactyla (24 species, 10% of the order), and Perissodactyla (six species, 38% of the order). In contrast, the percentage representation is low for Rodentia (66 species, 3% of species in the order), Primates (19 species, 4%), and Eulipotyphla (6 species, 1%). The proportional representation of less speciose orders is highly variable. The data set offers the opportunity to measure the recent (1970-2019) change in the distribution of terrestrial mammal species, and test ecological and biogeographical hypotheses about such change. It also allows us to identify areas where changes in species distribution were largest. No copyright or proprietary restrictions are associated with the use of this data set other than citation of this Data Paper.

Monitoring of environmental persistent organic pollutants in hair samples collected from wild terrestrial mammals of Primorsky Krai, Russia.

Persistent organic pollutants (POPs) constitute a wide range of chemicals. Their release into the environment has raised great concern due to their potentially harmful impact in humans and wildlife species. The aim of this current study was to detect selected POPs in hair samples of wild terrestrial mammals from Primorsky Krai, Russia, so as to assess potential environmental exposure. The tested wild species were leopard cat, musk deer, wolf, amur hedgehog, and raccoon dog. The targeted organochlorines were hexachlorobenzene (HCB) and DDTs (opDDE, ppDDE, and opDDD), polychlorinated biphenyl (PCB) congeners (28, 52, 101, 118, 138, 153, and 180), and polycyclic aromatic hydrocarbons (PAHs) (acenaphylene (ACEN), fluorene (FLU), anthracene (ANTH) phenathrene (PHEN), and pyrene (PYR)). The detection of POPs was conducted in hair samples by a one-step hair extraction method, by using a headspace solid-phase microextraction technique (HS-SPME) and analyzed then by GC-MS. The majority of the wild animal hair samples were found positive in all tested pollutants. More specifically, the percentage of positive hair samples for HCB was 93.3% and for DDTs, PCBs, and PAHs, 20.0 to 100.0%, 6.7 to 100.0%, and 75.0 to 100.0%, respectively. DDT, PCB, and PAH detection ranged from 1.26 to 52.06 pg mg-1, 0.73 to 31.34 pg mg-1, and 2.59 to 35.00 pg mg-1, respectively. The highest mean concentration levels of all tested pollutants were found for musk deer (PCBs 12.41 pg mg-1, DDTs 21.87 pg mg-1, PAHs 22.12 pg mg-1) compared to the other wild species. To the best of our knowledge, this is the first study that provides results regarding contamination in different terrestrial mammals by POP exposure. The use of hair as a matrix is proven to be an effective tool for nondestructive biological monitoring of POP contamination in terrestrial ecosystems.

Climate-driven ecological stability as a globally shared cause of Late Quaternary megafaunal extinctions: the Plaids and Stripes Hypothesis.

Controversy persists about why so many large-bodied mammal species went extinct around the end of the last ice age. Resolving this is important for understanding extinction processes in general, for assessing the ecological roles of humans, and for conserving remaining megafaunal species, many of which are endangered today. Here we explore an integrative hypothesis that asserts that an underlying cause of Late Quaternary megafaunal extinctions was a fundamental shift in the spatio-temporal fabric of ecosystems worldwide. This shift was triggered by the loss of the millennial-scale climate fluctuations that were characteristic of the ice age but ceased approximately 11700 years ago on most continents. Under ice-age conditions, which prevailed for much of the preceding 2.6 Ma, these radical and rapid climate changes prevented many ecosystems from fully equilibrating with their contemporary climates. Instead of today's 'striped' world in which species' ranges have equilibrated with gradients of temperature, moisture, and seasonality, the ice-age world was a disequilibrial 'plaid' in which species' ranges shifted rapidly and repeatedly over time and space, rarely catching up with contemporary climate. In the transient ecosystems that resulted, certain physiological, anatomical, and ecological attributes shared by megafaunal species pre-adapted them for success. These traits included greater metabolic and locomotory efficiency, increased resistance to starvation, longer life spans, greater sensory ranges, and the ability to be nomadic or migratory. When the plaid world of the ice age ended, many of the advantages of being large were either lost or became disadvantages. For instance in a striped world, the low population densities and slow reproductive rates associated with large body size reduced the resiliency of megafaunal species to population bottlenecks. As the ice age ended, the downsides of being large in striped environments lowered the extinction thresholds of megafauna worldwide, which then increased the vulnerability of individual species to a variety of proximate threats they had previously tolerated, such as human predation, competition with other species, and habitat loss. For many megafaunal species, the plaid-to-stripes transition may have been near the base of a hierarchy of extinction causes whose relative importances varied geographically, temporally, and taxonomically.

Conservation priorities for terrestrial mammals in Dobrogea Region, Romania.

Based on species occurrence records of museum collections, published literature, and unpublished records shared by mammalian experts, we compiled a distribution database for 59 terrestrial mammals populating the extensively protected Dobrogea Region of Romania. The spatial patterns of mammal distribution and diversity was evaluated and systematic conservation planning applied to identify priority areas for their conservation. The spatial analyses revealed that intensive sampling was not directly correlated to mammal diversity but rather to accessibility for inventory. The spatial prioritisation analysis indicated a relatively aggregated pattern of areas with a high or low conservation value with virtually no connecting corridors between them. The significant overlap between Natura 2000 sites and national protected areas induced an over-optimistic vision of the effectiveness and representativeness of existing Natura 2000 network for species found in Annexes II and IV of the Habitats Directive. These results represent a key step in identifying core areas for the protection of mammal diversity and dispersal corridors for improved connectivity, and to guide future conservation efforts in increasing the effectiveness of the existing protected areas in the context of environmental changes.

Activity pattern of medium and large sized mammals and density estimates of Cuniculus paca (Rodentia: Cuniculidae) in the Brazilian Pampa / Padrão de atividade de mamíferos de médio e grande porte e estimativa da densidade de Cuniculus paca (Rodentia: Cuniculidae) no Pampa brasileiro

Abstract Between July 2014 and April 2015, we conducted weekly inventories of the circadian activity patterns of mammals in Passo Novo locality, municipality of Alegrete, southern Brazil. The vegetation is comprised by a grassy-woody steppe (grassland). We used two camera traps alternately located on one of four 1 km transects, each separated by 1 km. We classified the activity pattern of species by the percentage of photographic records taken in each daily period. We identify Cuniculus paca individuals by differences in the patterns of flank spots. We then estimate the density 1) considering the area of riparian forest present in the sampling area, and 2) through capture/recapture analysis. Cuniculus paca, Conepatus chinga and Hydrochoerus hydrochaeris were nocturnal, Cerdocyon thous had a crepuscular/nocturnal pattern, while Mazama gouazoubira was cathemeral. The patterns of circadian activity observed for medium and large mammals in this Pampa region (southern grasslands) may reflect not only evolutionary, biological and ecological affects, but also human impacts not assessed in this study. We identified ten individuals of C. paca through skin spot patterns during the study period, which were recorded in different transects and months. The minimum population density of C. paca was 3.5 individuals per km2 (resident animals only) and the total density estimates varied from 7.1 to 11.8 individuals per km2, when considering all individuals recorded or the result of the capture/recapture analysis, respectively.

Resumo De julho de 2014 a abril de 2015, realizamos levantamentos semanais para estudar padrões de atividade circadiana da mastofauna na localidade de Passo Novo, Alegrete, sul do Brasil. A vegetação é compreendida por savana estépica (campo). Utilizamos duas armadilhas fotográficas distribuídas alternadamente ao longo de quatro transectos, com extensão de 1 km e distantes cerca de 1 km entre si. Nós classificamos o padrão de atividade das espécies através da percentagem de fotos registradas em cada período diário. Nós identificamos indivíduos de Cuniculus paca através dos diferentes padrões de manchas nos flancos dos animais. Nós então estimamos a densidade 1) considerando a área de floresta ripária presente na área amostrada, e 2) através da análise de captura/recaptura. As espécies Cuniculus paca, Conepatus chinga e Hydrochoerus hydrochaeris foram classificadas como noturnas, Cerdocyon thous apresentou um padrão crepuscular/noturno, enquanto Mazama gouazoubira foi classificada como catemeral. O padrão de atividade circadiana observado para os mamíferos de médio e grande porte nessa região do Pampa (campos sulinos) pode refletir não só aspectos evolutivos, biológicos e ecológicos, mas também impactos humanos não avaliados nesse estudo. Através do padrão de manchas da pelagem de C. paca nós identificamos dez indivíduos durante o período de estudo, que foram registrados em diferentes transectos e meses. A densidade populacional mínima de C. paca foi de 3,5 ind/km2 (apenas indivíduos residentes) e a densidade total variou de 7,1 a 11,8 ind/km2, quando consideramos todos os indivíduos registrados ou com base em análises de captura e recaptura, respectivamente.