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1.
Plant Methods ; 20(1): 150, 2024 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-39342217

RESUMO

BACKGROUND: Root phenotyping is particularly challenging because of complexity and inaccessibility of root apparatus. Orientation is one of the most important architectural traits of roots and its characterization is generally addressed using multiple approaches often based on overall measurements which are difficult to correlate to plant specific physiological aspects and its genetic features. Hence, a 3D image analysis approach, based on the recent method of Straumit, is proposed in this study to obtain a local mapping of root angles. RESULTS: Proposed method was applied here on radicles of carrot seedlings grown in real weightlessness on the International Space Station (ISS) and on Earth simulated weightlessness by clinorotation. A reference experiment in 1 g static condition on Earth was also performed. Radicles were imaged by X-ray micro-CT and two novel root orientation traits were defined: the "root angle to sowing plane" (RASP) providing accurate angle distributions for each analysed radicle and the "root orientation changes" (ROC) number. The parameters of the RASP distributions and the ROC values did not exhibit any significant difference in orientation between radicles grown under clinorotation and on the ISS. Only a slight thickening in root corners was found in simulated vs real weightlessness. Such results showed that a simple uniaxial clinostat can be an affordable analog in experimental studies reckoning on weightless radicles growth. CONCLUSIONS: The proposed local orientation mapping approach can be extended also to different root systems providing a contribution in the challenging task of phenotyping complex and important plant structures such as roots.

2.
Urolithiasis ; 52(1): 57, 2024 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-38563829

RESUMO

Calcium oxalate kidney stones, the most prevalent type of kidney stones, undergo a multi-step process of crystal nucleation, growth, aggregation, and secondary transition. The secondary transition has been rather overlooked, and thus, the effects on the disease and the underlying mechanism remain unclear. Here, we show, by periodic micro-CT images of human kidney stones in an ex vivo incubation experiment, that the growth of porous aggregates of calcium oxalate dihydrate (COD) crystals triggers the hardening of the kidney stones that causes difficulty in lithotripsy of kidney stone disease in the secondary transition. This hardening was caused by the internal nucleation and growth of precise calcium oxalate monohydrate (COM) crystals from isolated urine in which the calcium oxalate concentrations decreased by the growth of COD in closed grain boundaries of COD aggregate kidney stones. Reducing the calcium oxalate concentrations in urine is regarded as a typical approach for avoiding the recurrence. However, our results revealed that the decrease of the concentrations in closed microenvironments conversely promotes the transition of the COD aggregates into hard COM aggregates. We anticipate that the suppression of the secondary transition has the potential to manage the deterioration of kidney stone disease.


Assuntos
Líquidos Corporais , Cálculos Renais , Litotripsia , Humanos , Oxalato de Cálcio , Dureza
3.
New Phytol ; 243(1): 423-439, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38361330

RESUMO

Vascular systems are intimately related to the shape and spatial arrangement of the plant organs they support. We investigate the largely unexplored association between spiral phyllotaxis and the vascular system in Asteraceae flower heads. We imaged heads of eight species using synchrotron-based X-ray micro-computed tomography and applied original virtual reality and haptic software to explore head vasculature in three dimensions. We then constructed a computational model to infer a plausible patterning mechanism. The vascular system in the head of the model plant Gerbera hybrida is qualitatively different from those of Bellis perennis and Helianthus annuus, characterized previously. Cirsium vulgare, Craspedia globosa, Echinacea purpurea, Echinops bannaticus, and Tanacetum vulgare represent variants of the Bellis and Helianthus systems. In each species, the layout of the main strands is stereotypical, but details vary. The observed vascular patterns can be generated by a common computational model with different parameter values. In spite of the observed differences of vascular systems in heads, they may be produced by a conserved mechanism. The diversity and irregularities of vasculature stand in contrast with the relative uniformity and regularity of phyllotactic patterns, confirming that phyllotaxis in heads is not driven by the vasculature.


Assuntos
Flores , Feixe Vascular de Plantas , Microtomografia por Raio-X , Flores/anatomia & histologia , Feixe Vascular de Plantas/anatomia & histologia , Asteraceae/anatomia & histologia , Asteraceae/fisiologia , Modelos Biológicos , Simulação por Computador , Especificidade da Espécie
4.
J Struct Biol ; 215(4): 108036, 2023 12.
Artigo em Inglês | MEDLINE | ID: mdl-37832837

RESUMO

The widespread decline of shallow-water coral reefs has fueled interest in assessing whether mesophotic reefs can act as refugia replenishing deteriorated shallower reefs through larval exchange. Here we explore the morphological and molecular basis facilitating survival of planulae and adults of the coral Porites astreoides (Lamarck, 1816; Hexacorallia: Poritidae) along the vertical depth gradient in Bermuda. We found differences in micro-skeletal features such as bigger calyxes and coarser surface of the skeletal spines in shallow corals. Yet, tomographic reconstructions reveal an analogous mineral distribution between shallow and mesophotic adults, pointing to similar skeleton growth dynamics. Our study reveals patterns of host genetic connectivity and minimal symbiont depth-zonation across a broader depth range than previously known for this species in Bermuda. Transcriptional variations across life stages showed different regulation of metabolism and stress response functions, unraveling molecular responses to environmental conditions at different depths. Overall, these findings increase our understanding of coral acclimatory capability across broad vertical gradients, ultimately allowing better evaluation of the refugia potential of mesophotic reefs.


Assuntos
Antozoários , Poríferos , Animais , Antozoários/genética , Bermudas , Recifes de Corais , Água , Ecossistema
5.
Life (Basel) ; 13(9)2023 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-37763323

RESUMO

A new species of the genus Cartorhynchites (Rhynchitini, Rhynchitina) is described from Baltic amber. Cartorhynchites groehni Legalov, Bukejs et Alekseev sp. n. differs from C. struvei Zherikhin, 1992 from the Miocene of Germany in its smaller body size (2.6 mm), strongly convex eyes, narrower pronotum and wide elytra, and dark brown legs. A new species is studied and illustrated in detail using X-ray micro-computed tomography (µCT). It is the earliest fossil record of subtribe Rhynchitina. A list of fossil Rhynchitidae was compiled. A key to species of Rhynchitidae in Baltic amber was given. Fossil finds of the family Rhynchitidae were discussed. The assumption was made that the Recent distribution range of the genus Cartorhynchites is within the range of its host plant of the genus Symplocos. Probably, a new Eocene species developed on Symplocos kowalewskii, and the Oligocene C. struvei was associated with Symplocos myosotis (Unger).

7.
Microscopy (Oxf) ; 72(4): 310-325, 2023 Aug 04.
Artigo em Inglês | MEDLINE | ID: mdl-37098215

RESUMO

Studies visualizing plant tissues and organs in three-dimension (3D) using micro-computed tomography (CT) published since approximately 2015 are reviewed. In this period, the number of publications in the field of plant sciences dealing with micro-CT has increased along with the development of high-performance lab-based micro-CT systems as well as the continuous development of cutting-edge technologies at synchrotron radiation facilities. The widespread use of commercially available lab-based micro-CT systems enabling phase-contrast imaging technique, which is suitable for the visualization of biological specimens composed of light elements, appears to have facilitated these studies. Unique features of the plant body, which are particularly utilized for the imaging of plant organs and tissues by micro-CT, are having functional air spaces and specialized cell walls, such as lignified ones. In this review, we briefly describe the basis of micro-CT technology first and then get down into details of its application in 3D visualization in plant sciences, which are categorized as follows: imaging of various organs, caryopses, seeds, other organs (reproductive organs, leaves, stems and petioles), various tissues (leaf venations, xylems, air-filled tissues, cell boundaries, cell walls), embolisms and root systems, hoping that wide users of microscopes and other imaging technologies will be interested also in micro-CT and obtain some hints for a deeper understanding of the structure of plant tissues and organs in 3D. Majority of the current morphological studies using micro-CT still appear to be at a qualitative level. Development of methodology for accurate 3D segmentation is needed for the transition of the studies from a qualitative level to a quantitative level in the future.


Assuntos
Imageamento Tridimensional , Plantas , Microtomografia por Raio-X , Síncrotrons , Microscopia de Contraste de Fase
8.
J Exp Biol ; 226(10)2023 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-37040071

RESUMO

Rapid movements of limbs and appendages, faster than those produced by simple muscle contraction alone, are generated through mechanical networks consisting of springs and latches. The latch plays a central role in these spring-loaded mechanisms, but the structural details of the latch are not always known. The mandibles of the trap-jaw ant Odontomachus kuroiwae closes the mandible extremely quickly to capture prey or to perform mandible-powered defensive jumps to avoid potential threats. The jump is mediated by a mechanical spring and latch system embodied in the mandible. An ant can strike the tip of the mandible onto the surface of an obstacle (prey, predator or ground) in order to bounce its body away from potential threats. The angular velocity of the closing mandible was 2.3×104 rad s-1 (1.3×106 deg s-1). Latching of the joint is a key mechanism to aid the storage of energy required to power the ballistic movements of the mandibles. We have identified the fine structure of two latch systems on the mandible forming a 'ball joint' using an X-ray micro-computational tomography system (X-ray micro-CT) and X-ray live imaging with a synchrotron. Here, we describe the surface of the inner section of the socket and a projection on the lip of the ball. The X-ray live imaging and movements of the 3D model show that the ball with a detent ridge slipped into a socket and over the socket ridge before snapping back at the groove edge. Our results give insight into the complex spring-latch systems that underpin ultra-fast movements in biological systems.


Assuntos
Formigas , Animais , Formigas/fisiologia , Fenômenos Biomecânicos/fisiologia , Mandíbula/fisiologia , Movimento/fisiologia , Contração Muscular
9.
Polymers (Basel) ; 15(4)2023 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-36850332

RESUMO

The analysis of fibrous structures using micro-computer tomography (µCT) is becoming more important as it provides an opportunity to characterise the mechanical properties and performance of materials. This study is the first attempt to provide computations of fibre crimp for various random fibrous networks (RFNs) based on µCT data. A parametric algorithm was developed to compute fibre crimp in fibres in a virtual domain. It was successfully tested for six different X-ray µCT models of nonwoven fabrics. Computations showed that nonwoven fabrics with crimped fibres exhibited higher crimp levels than those with non-crimped fibres, as expected. However, with the increased fabric density of the non-crimped nonwovens, fibres tended to be more crimped. Additionally, the projected fibre crimp was computed for all three major 2D planes, and the obtained results were statistically analysed. Initially, the algorithm was tested for a small-size, nonwoven model containing only four fibres. The fraction of nearly straight fibres was computed for both crimped and non-crimped fabrics. The mean value of the fibre crimp demonstrated that fibre segments between intersections were almost straight. However, it was observed that there were no perfectly straight fibres in the analysed RFNs. This study is applicable to approach employing a finite-element analysis (FEA) and computational fluid dynamics (CFD) to model/analyse RFNs.

10.
Clin Implant Dent Relat Res ; 25(2): 261-270, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-36596566

RESUMO

OBJECTIVE: Anterior maxillary immediate implant placement has become a popular procedure. It has aesthetic and functional risks. A prerequisite for success is sufficient alveolar bone for primary stability. Many cone-beam computed tomography (CBCT) studies have assessed alveolar bone dimensions in the anterior maxilla, with varying results. More accurate information on the alveolar bone dimensions in the anterior maxilla is required. The objective of the present study was to evaluate bone dimensions in the anterior maxilla using micro-CT, a high-resolution imaging tool. MATERIALS AND METHODS: Seventy-two human skulls were scanned using micro-CT at the South African Nuclear Energy Corporation. Specialized software was used for 3-D rendering, segmentation, and visualization of the reconstructed volume data. Axial planes were created over each alveolus/tooth from canine to canine. Buccal and palatal bone dimensions were measured at crestal, 3 mm, 6 mm, and 9 mm levels. RESULTS: Buccal bone rarely exceeded 0.5 mm, consisting of bundle bone only for all investigated teeth at all levels. Up to a third of teeth showed buccal fenestrations. Alveolar bone on the palatal side was thicker than buccal and increased from <1 mm at crestal level up to 3.77 mm, 4.56 mm, and 5.43 mm for centrals, laterals, and canines at the 9 mm level, respectively. CONCLUSIONS: Immediate implants in the anterior maxillae has anatomical risks. Alveolar bone on the buccal aspect is very thin, with fenestrations in certain positions. Therefore, a thorough planning and individual approach are needed to avoid possible complications and achieve stable aesthetic and functional results in the long-term.


Assuntos
Implantes Dentários , Humanos , Processo Alveolar/diagnóstico por imagem , Maxila/diagnóstico por imagem , Microtomografia por Raio-X , Estética Dentária , Tomografia Computadorizada de Feixe Cônico/métodos
11.
Int J Oral Maxillofac Surg ; 52(1): 44-50, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-35680482

RESUMO

Condylar hyperplasia is one of the causes of facial asymmetry and malocclusion, characterized by enlargement of the lower jaw due to excessive condyle growth activity. The aim of this study was to use micro-computed tomography (micro-CT) to evaluate the bone architecture of the condylar head and determine whether there are differences between patients with various forms of unilateral condylar hyperplasia (UCH): hemimandibular hyperplasia, elongation, and mixed form. The cohort consisted of 28 patients with a mean age of 21.9 years. All patients underwent surgical treatment (condylar shaving) for active pathological growth activity. The portion of the condylar head removed was imaged by micro-CT and subsequently evaluated. Micro-CT imaging and semiquantitative and quantitative evaluation of the bone structure (percentage bone volume, surface density, trabecular thickness, trabecular separation, degree of anisotropy, and porosity of the subchondral bone) did not reveal significant differences between the individual types of condylar hyperplasia (P > 0.05). There were no significant differences in bone structure between the anterior and posterior portions of the condylar head. No statistically significant differences between individual groups of UCH were found in the micro-CT evaluation of the condylar head bone architecture.


Assuntos
Assimetria Facial , Côndilo Mandibular , Humanos , Adulto Jovem , Adulto , Microtomografia por Raio-X/efeitos adversos , Côndilo Mandibular/diagnóstico por imagem , Côndilo Mandibular/cirurgia , Côndilo Mandibular/patologia , Hiperplasia/diagnóstico por imagem , Hiperplasia/patologia , Assimetria Facial/diagnóstico por imagem , Assimetria Facial/cirurgia , Assimetria Facial/etiologia , Mandíbula/patologia
12.
Philos Trans A Math Phys Eng Sci ; 381(2240): 20210222, 2023 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-36403639

RESUMO

Understanding the fatigue behaviour of hybrid fibre-reinforced plastics is desirable for exploiting their features in safe, durable and reliable industrial components. The fatigue performance of hybrid composites has not been extensively investigated yet. The paper presents an overview of the available knowledge on the fatigue of hybrid fibre-reinforced plastics, and, more specifically, reports the fatigue behaviour of a quasi-isotropic pseudo-ductile all-carbon fibre interlayer hybrid composite by experimental measurements and observations, with emphasis on the damage development. The fatigue conditions are tension-tension stress- and strain-controlled cyclic loading. The results include fatigue life for different maximum stress and strain levels, stiffness evolution and damage observations by X-ray micro-computed tomography. The studied hybrid all-carbon fibre quasi-isotropic composite exhibits pseudo-ductility in quasi-static testing. For stress-controlled fatigue, the fatigue load over the limit of elastic response is not sustained. Contrary to that, the composite retains its load-carrying ability in the pseudo-ductile regime for a strain-controlled regime, albeit with lowered stiffness. This article is part of the theme issue 'Ageing and durability of composite materials'.

13.
J Colloid Interface Sci ; 628(Pt A): 486-498, 2022 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-35940140

RESUMO

HYPOTHESIS: The wettability change from oil-wet towards more water-wet conditions by injecting diluted brine can improve oil recovery from reservoir rocks, known as low salinity waterflooding. We investigated the underlying pore-scale mechanisms of this process to determine if improved recovery was associated with a change in local contact angle, and if additional displacement was facilitated by the formation of micro-dispersions of water in oil and water film swelling. EXPERIMENTS: X-ray imaging and high-pressure and temperature flow apparatus were used to investigate and compare high and low salinity waterflooding in a carbonate rock sample. The sample was placed in contact with crude oil to obtain an initial wetting state found in hydrocarbon reservoirs. High salinity brine was then injected at increasing flow rates followed by low salinity brine injection using the same procedure. FINDINGS: Development of water micro-droplets within the oil phase and detachment of oil layers from the rock surface were observed after low salinity waterflooding. During high salinity waterflooding, contact angles showed insignificant changes from the initial value of 115°, while the mean curvature and local capillary pressure values remained negative, consistent with oil-wet conditions. However, with low salinity, the decrease in contact angle to 102° and the shift in the mean curvature and capillary pressure to positive values indicate a wettability change. Overall, our analysis captured the in situ mechanisms and processes associated with the low salinity effect and ultimate increase in oil recovery.

14.
Plant Cell Environ ; 45(11): 3275-3289, 2022 11.
Artigo em Inglês | MEDLINE | ID: mdl-36030547

RESUMO

Temperature (T) and vapour pressure deficit (VPD) are important drivers of plant hydraulic conductivity, growth, mortality, and ecosystem productivity, independently of soil water availability. Our goal was to disentangle the effects of T and VPD on plant hydraulic responses. Young trees of Fagus sylvatica L., Quercus pubescens Willd. and Quercus ilex L. were exposed to a cross-combination of a T and VPD manipulation under unlimited soil water availability. Stem hydraulic conductivity and leaf-level hydraulic traits (e.g., gas exchange and osmotic adjustment) were tracked over a full growing season. Significant loss of xylem conductive area (PLA) was found in F. sylvatica and Q. pubescens due to rising VPD and T, but not in Q. ilex. Increasing T aggravated the effects of high VPD in F. sylvatica only. PLA was driven by maximum hydraulic conductivity and minimum leaf conductance, suggesting that high transpiration and water loss after stomatal closure contributed to plant hydraulic stress. This study shows for the first time that rising VPD and T lead to losses of stem conductivity even when soil water is not limiting, highlighting their rising importance in plant mortality mechanisms in the future.


Assuntos
Quercus , Solo , Secas , Ecossistema , Folhas de Planta/fisiologia , Transpiração Vegetal/fisiologia , Poliésteres , Quercus/fisiologia , Temperatura , Pressão de Vapor , Água/fisiologia
15.
Microscopy (Oxf) ; 71(6): 364-373, 2022 Dec 08.
Artigo em Inglês | MEDLINE | ID: mdl-35993532

RESUMO

Land plants have two types of shoot-supporting systems, root system and rhizoid system, in vascular plants and bryophytes. However, since the evolutionary origin of the systems is different, how much they exploit common systems or distinct systems to architect their structures is largely unknown. To understand the regulatory mechanism of how bryophytes architect the rhizoid system responding to environmental factors, we have developed the methodology to visualize and quantitatively analyze the rhizoid system of the moss, Physcomitrium patens, in 3D. The rhizoids having a diameter of 21.3 µm on the average were visualized by refraction-contrast X-ray micro-computed tomography using coherent X-ray optics available at synchrotron radiation facility SPring-8. Three types of shape (ring-shape, line and black circle) observed in tomographic slices of specimens embedded in paraffin were confirmed to be the rhizoids by optical and electron microscopy. Comprehensive automatic segmentation of the rhizoids, which appeared in three different form types in tomograms, was tested by a method using a Canny edge detector or machine learning. The accuracy of output images was evaluated by comparing with the manually segmented ground truth images using measures such as F1 score and Intersection over Union, revealing that the automatic segmentation using machine learning was more effective than that using the Canny edge detector. Thus, machine learning-based skeletonized 3D model revealed quite dense distribution of rhizoids. We successfully visualized the moss rhizoid system in 3D for the first time.


Assuntos
Microtomografia por Raio-X
16.
Micron ; 160: 103321, 2022 09.
Artigo em Inglês | MEDLINE | ID: mdl-35834874

RESUMO

Quantitative analysis of fibre orientation in a random fibrous network (RFN) is important to understand their microstructure, properties and performance. 2D fibre orientation distribution presents an in-plane fibre orientation without any information on fibre orientation in thickness direction. This research introduces a fully parametric algorithm for computing 3D fibre orientation as thickness is important for high-density or thick fibrous networks. The algorithm is tested for 3 major classes of nonwoven fabrics called low- (L), medium- (M) and high-density (H) ones. H fabric density is 6-8 times larger than the L fabric density. M fabric density (traditional intermediate fabric density) is 3-4 times larger than the L fabric density. Voxel models of experimental nonwoven webs were generated by an X-ray micro-CT (µCT) system and evaluated with the algorithm. Statistical results showed that a fraction of fibres orientated along the thickness direction increases as fibre density grows. To validate the accuracy of findings, deterministic voxelated virtual fibrous structures, created using mathematical functions were used. This novel algorithm is able to produce a 3D orientation distribution function (ODF) for any RFN including, models of nonwovens produced with various manufacturing parameters, experimentally verified and validated with X-ray µCT. Also, it can compute 2D ODFs of various types of RFNs to evaluate 2D behaviour of fibrous structures. The obtained results are useful for applications in many fields including finite element analysis, computational fluid dynamics, additive manufacturing, etc.


Assuntos
Algoritmos , Microtomografia por Raio-X
17.
Stomatologiia (Mosk) ; 101(3): 12-17, 2022.
Artigo em Russo | MEDLINE | ID: mdl-35640173

RESUMO

THE AIM OF THE STUDY: Comparative study of the precision of the junction of modern implant systems with standard and custom abutments. MATERIALS AND METHODS: The study was carried out by the method of computed X-ray microtomography on an X-ray microtomograph Heliscan micro CT using the ImageJ program in the laboratory «Systems for Microscopy and Analysis¼ of the Skolkovo Technopark. The measurement of the gap width between the implant and the abutment for each sample was carried out at 20 points according to the algorithm: the total length of the connection between the implant and the abutment; step (distance) between 5 equidistant points along the contact between the abutment and the implant; the measurements were repeated in 2 perpendicular sections along the joint node axis. The study was conducted on the example of seven implant systems common in Russia. The effect on the implant-abutment assembly of a multiple functional load of 250 N at an angle of 45° (7.6 million cycles) was studied. RESULTS: It has been established that the precision of the junction of modern implants with standard abutments is different and is characterized by the length of the contact from 268 to 1300 µm, the gap at the level of the platform from 5.0 to 11.7 µm, and the asymmetry of the contact in diameter by 2.4-14.2 µm. Abutments individually made in modern CAD/CAM laboratories do not have significant dimensional differences with standard abutments, but they have technological defects. The functional load expands and deforms the gap between the implant and abutment junction in the upper half of their contact. CONCLUSION: The results obtained demonstrate the capabilities of the computer X-ray microtomography method, which can be used to control the quality of manufacturing collapsible dental implants, the accuracy of manufacturing individual abutments in CAD/CAM laboratories, as well as in the development of new dental implant systems. The dimensional parameters of the junction node determine the advantages of the deep cone connection of the implant and the abutment.


Assuntos
Projeto do Implante Dentário-Pivô , Implantes Dentários , Dente Suporte , Projeto do Implante Dentário-Pivô/métodos , Humanos , Titânio/química , Microtomografia por Raio-X
18.
Gigascience ; 112022 04 05.
Artigo em Inglês | MEDLINE | ID: mdl-35380661

RESUMO

BACKGROUND: Lightless caves can harbour a wide range of living organisms. Cave animals have evolved a set of morphological, physiological, and behavioural adaptations known as troglomorphisms, enabling their survival in the perpetual darkness, narrow temperature and humidity ranges, and nutrient scarcity of the subterranean environment. In this study, we focused on adaptations of skull shape and sensory systems in the blind cave salamander, Proteus anguinus, also known as olm or simply proteus-the largest cave tetrapod and the only European amphibian living exclusively in subterranean environments. This extraordinary amphibian compensates for the loss of sight by enhanced non-visual sensory systems including mechanoreceptors, electroreceptors, and chemoreceptors. We compared developmental stages of P. anguinus with Ambystoma mexicanum, also known as axolotl, to make an exemplary comparison between cave- and surface-dwelling paedomorphic salamanders. FINDINGS: We used contrast-enhanced X-ray computed microtomography for the 3D segmentation of the soft tissues in the head of P. anguinus and A. mexicanum. Sensory organs were visualized to elucidate how the animal is adapted to living in complete darkness. X-ray microCT datasets were provided along with 3D models for larval, juvenile, and adult specimens, showing the cartilage of the chondrocranium and the position, shape, and size of the brain, eyes, and olfactory epithelium. CONCLUSIONS: P. anguinus still keeps some of its secrets. Our high-resolution X-ray microCT scans together with 3D models of the anatomical structures in the head may help to elucidate the nature and origin of the mechanisms behind its adaptations to the subterranean environment, which led to a series of troglomorphisms.


Assuntos
Proteidae , Animais , Escuridão , Urodelos , Raios X
19.
BMC Cancer ; 22(1): 162, 2022 Feb 11.
Artigo em Inglês | MEDLINE | ID: mdl-35148703

RESUMO

BACKGROUND: The detection of suspicious microcalcifications on mammography represents one of the earliest signs of a malignant breast tumor. Assessing microcalcifications' characteristics based on their appearance on 2D breast imaging modalities is in many cases challenging for radiologists. The aims of this study were to: (a) analyse the association of shape and texture properties of breast microcalcifications (extracted by scanning breast tissue with a high resolution 3D scanner) with malignancy, (b) evaluate microcalcifications' potential to diagnose benign/malignant patients. METHODS: Biopsy samples of 94 female patients with suspicious microcalcifications detected during a mammography, were scanned using a micro-CT scanner at a resolution of 9 µm. Several preprocessing techniques were applied on 3504 extracted microcalcifications. A high amount of radiomic features were extracted in an attempt to capture differences among microcalcifications occurring in benign and malignant lesions. Machine learning algorithms were used to diagnose: (a) individual microcalcifications, (b) samples. For the samples, several methodologies to combine individual microcalcification results into sample results were evaluated. RESULTS: We could classify individual microcalcifications with 77.32% accuracy, 61.15% sensitivity and 89.76% specificity. At the sample level diagnosis, we achieved an accuracy of 84.04%, sensitivity of 86.27% and specificity of 81.39%. CONCLUSIONS: By studying microcalcifications' characteristics at a level of details beyond what is currently possible by using conventional breast imaging modalities, our classification results demonstrated a strong association between breast microcalcifications and malignancies. Microcalcification's texture features extracted in transform domains, have higher discriminating power to classify benign/malignant individual microcalcifications and samples compared to pure shape-features.


Assuntos
Mama/diagnóstico por imagem , Calcinose/diagnóstico por imagem , Detecção Precoce de Câncer/métodos , Imageamento Tridimensional/métodos , Microtomografia por Raio-X/métodos , Adulto , Mama/patologia , Neoplasias da Mama , Feminino , Humanos , Aprendizado de Máquina , Mamografia , Pessoa de Meia-Idade , Interpretação de Imagem Radiográfica Assistida por Computador , Sensibilidade e Especificidade
20.
Plants (Basel) ; 11(3)2022 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-35161287

RESUMO

(1) Recent studies suggested that stem photosynthesis could favor bark water uptake and embolism recovery when stem segments are soaked in water under light conditions, but evidence for this phenomenon in drought-resistant Mediterranean species with photosynthetic stems is missing. (2) Embolism recovery upon immersion in water for 2 h-4 h under light was assessed (i) via a classical hydraulic method in leafless Fraxinus ornus and Olea europaea branch segments stressed to xylem water potentials (Yxyl) inducing ca. 50% loss of hydraulic conductivity (PLC) and (ii) via X-ray micro-CT imaging of the stem segments of drought-stressed potted F. ornus saplings. Hydraulic recovery was also assessed in vivo in intact drought-stressed F. ornus saplings upon soil re-irrigation. (3) Intact F. ornus plants recovered hydraulic function through root water uptake. Conversely, the soaked stem segments of both species did not refill embolized conduits, although Yxyl recovered to pre-stress levels (between -0.5 MPa and -0.2 MPa). (4) We hypothesize that xylem embolism recovery through bark water uptake, even in light conditions, may not be a common phenomenon in woody plants and/or that wounds caused by cutting short stem segments might inhibit the refilling process upon soaking.

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