Assessment of Captive Environment for Oriental Small-Clawed Otters (Aonyx cinereus) in Otter Cafés in Japan.

This study investigates the captive environments of oriental small-clawed otter (OSO; Aonyx cinereus) cafés in Japan, aiming to identify discrepancies with established welfare guidelines. Improved management of these commercial facilities could raise awareness about the difficulties of keeping OSOs as pets and enhance their welfare. Utilizing the role of commercial facilities in public outreach, we consider that the rigorous implementation of proper care practices in these establishments could help mitigate the increasing demand for OSOs domestically and contribute to the conservation of the OSO. In this study, we focused on the critical aspects of the captive environment necessary to maintain the psychological well-being of OSOs and evaluated the captive environments of OSOs housed in animal cafés for OSO welfare using non-invasive methods. Based on zoo husbandry standards, it was found that there were deficiencies in aquatic environments and solitary housing conditions; however, the enrichment tools aligned with the guidelines. The results suggest that deviations from the recommended elements in the environment of OSOs in captivity are associated with a tendency of these OSOs to develop various diseases. It is deemed necessary to amend the regulations governing animal-handling businesses to include welfare criteria, and it is considered essential for each establishment to operate only after ensuring sufficient welfare for the OSOs.

Global Overview of Environmental Enrichment Studies: What Has Been Done and Future Directions.

(1) Background: Environmental enrichment (EE) is a management principle aimed at meeting the needs of animals under human care by identifying and providing essential environmental stimuli to contribute to the integrity of their psychological and physiological well-being. Studies on EE have been carried out worldwide, but consolidated information on how it has been used, who it has been used for, how it has been evaluated, and what gaps still exist in the subject is scarce in the scientific literature. This study assessed, employing a systematic review, the global scenario of research into EE in animals kept under human care over the last 17 years, answering the above-mentioned questions. (2) Methods: A search for EE papers was carried out in the Web of Science and Scopus databases from January 2005 to December 2021, resulting in 2002 articles from which information was extracted. (3) Results: Results showed an increase in the number of articles published on EE, especially in farms, but studies in laboratory environments continue to be more frequent. Mammals and birds are the most studied animal groups. Cognitive enrichment is the least utilised by researchers. The number of publications by researchers from countries in the southern hemisphere is low. (4) Conclusions: Although the technique of EE is being widely used, it is still focused on certain groups of animals in certain captive environments and carried out mainly in the northern hemisphere of the planet. Therefore, the gaps pointed out here need to be filled by future studies.

Microbiome composition and presence of cultivable commensal groups of Southern Tamanduas (Tamandua tetradactyla) varies with captive conditions.

Southern Tamanduas (Tamandua tetradactyla) belong to the specialized placental myrmecophages. There is not much information about their intestinal microbiome. Moreover, due to their food specialization, it is difficult to create an adequate diet under breeding conditions. Therefore, we used 16S rDNA amplicon sequencing to analyze the fecal microbiome of captive Southern Tamanduas from four locations in the Czech Republic and evaluated the impact of the incoming diet and facility conditions on microbiome composition. Together with the microbiome analysis, we also quantified and identified cultivable commensals. The anteater fecal microbiome was dominated by the phyla Bacillota and Bacteroidota, while Pseudomonadota, Spirochaetota, and Actinobacteriota were less abundant. At the taxonomic family level, Lachnospiraceae, Prevotellaceae, Bacteroidaceae, Oscillospiraceae, Erysipelotrichaceae, Spirochaetaceae, Ruminococcaceae, Leuconostocaceae, and Streptococcaceae were mainly represented in the fecal microbiome of animals from all locations. Interestingly, Lactobacillaceae dominated in the location with a zoo-made diet. These animals also had significantly lower diversity of gut microbiome in comparison with animals from other locations fed mainly with a complete commercial diet. Moreover, captive conditions of analyzed anteater included other factors such as the enrichment of the diet with insect-based products, probiotic interventions, the presence of other animals in the exposure, which can potentially affect the composition of the microbiome and cultivable microbes. In total, 63 bacterial species from beneficial commensal to opportunistic pathogen were isolated and identified using MALDI-TOF MS in the set of more than one thousand selected isolates. Half of the detected species were present in the fecal microbiota of most animals, the rest varied across animals and locations.

Red pandas with different diets and environments exhibit different gut microbial functional composition and capacity.

The red panda (Ailurus fulgens) is a distinctive mammal known for its reliance on a diet primarily consisting of bamboo. The gut microbiota and overall health of animals are strongly influenced by diets and environments. Therefore, conducting research to explore the taxonomical and functional variances within the gut microbiota of red pandas exposed to various dietary and environmental conditions could shed light on the dynamic complexities of their microbial communities. In this study, normal fecal samples were obtained from red pandas residing in captive and semi-free environments under different dietary regimes and used for metabolomic, 16S rRNA, and metagenomic sequencing analysis, with the pandas classified into four distinct cohorts according to diet and environment. In addition, metagenomic sequencing was conducted on mucus fecal samples to elucidate potential etiological agents of disease. Results revealed an increased risk of gastrointestinal diseases in red pandas consuming bamboo shoots due to the heightened presence of pathogenic bacteria, although an increased presence of microbiota-derived tryptophan metabolites appeared to facilitate intestinal balance. The red pandas fed bamboo leaves also exhibited a decrease in gut microbial diversity, which may be attributed to the antibacterial flavonoids and lower protein levels in leaves. Notably, red pandas residing in semi-free environments demonstrated an enriched gut microbial diversity. Moreover, the occurrence of mucus secretion may be due to an increased presence of species associated with diarrhea and a reduced level of microbiota-derived tryptophan metabolites. In summary, our findings substantiate the influential role of diet and environment in modulating the gut microbiota of red pandas, offering potential implications for improved captive breeding practices.

The composition and function of the gut microbiota of Francois' langurs (Trachypithecus francoisi) depend on the environment and diet.

The microbiota is essential for the extraction of energy and nutrition from plant-based diets and may have facilitated primate adaptation to new dietary niches in response to rapid environmental shifts. In this study, metagenomic sequencing technology was used to analyze the compositional structure and functional differences of the gut microbial community of Francois' langurs (Trachypithecus francoisi) under different environmental and dietary conditions. The results showed that in terms of the composition of the gut microbial community, there were significant differences among the gut microbiota of Francois' langurs (anthropogenic disturbed populations, wild populations, and captive populations) under different environmental and dietary conditions. The microbial communities with the highest abundance in Francois' langurs were Firmicutes and Bacteroidetes. Firmicutes was the most abundant phylum in anthropogenic disturbed Francois' langurs and the least abundant in captive Francois' langurs. The abundance of Bacteroidetes was highest in captive Francois' langurs. In the analysis and comparison of alpha diversity, the diversity of the gut microbiota of Francois' langurs affected by anthropogenic disturbance was the highest. The significant differences in gut microbiota between Francois' langurs in different environments and different diets were further supported by principal coordinate analysis (PCoA), with the disturbance group having a gut microbiota more similar to the wild group. Kyoto Encyclopedia of Genes and Genomes (KEGG) functional annotation analysis indicated a high abundance of functional genes involved in carbohydrate metabolism, amino acid metabolism, replication and repair, cofactor and vitamin metabolism, and other amino acid metabolism pathways. Additionally, the functional genes involved in carbohydrate metabolism pathways were significantly enriched in the gut microbial community of Francois' langurs that were anthropogenic disturbed and captive. The gut microbiota of the Francois' langurs exhibited potential plasticity for dietary flexibility, and long-term food availability in captive populations leads to changes in gut microbiota composition and function. This study explored the composition and function of the gut microbiota of Francois' langurs and provided a scientific basis for understanding the physiological and health status of Francois' langurs, effectively protecting the population of wild Francois' langurs and reintroducing captive Francois' langurs into the wild.

Association between diet and the gut microbiome of young captive red-crowned cranes (Grus japonensis).

BACKGROUND: Exploring the association of diet and indoor and outdoor environments on the gut microbiome of red-crowned cranes. We investigated the microbiome profile of the 24 fecal samples collected from nine cranes from day 1 to 35. Differences in the gut microbiome composition were compared across diet and environments. RESULTS: A total of 2,883 operational taxonomic units (OTUs) were detected, with 438 species-specific OTUs and 106 OTUs common to the gut microbiomes of four groups. The abundance of Dietzia and Clostridium XI increased significantly when the red-crowned cranes were initially fed live mealworms. Skermanella and Deinococcus increased after the red-crowned cranes were fed fruits and vegetables and placed outdoors. Thirty-three level II pathway categories were predicted. Our study revealed the mechanism by which the gut microbiota of red-crowned cranes responds to dietary and environmental changes, laying a foundation for future breeding, nutritional and physiological studies of this species. CONCLUSIONS: The gut microbiome of red-crowned cranes could adapt to changes in diet and environment, but the proportion of live mealworms in captive red-crowned cranes can be appropriately reduced at the initial feeding stage, reducing the negative impact of high-protein and high-fat foods on the gut microbiome and growth and development.

Captivity Influences the Gut Microbiome of Rhinopithecus roxellana.

Ex situ (captivity in zoos) is regarded as an important form of conservation for endangered animals. Many studies have compared differences in the gut microbiome between captive and wild animals, but few have explained those differences at the functional level due to the limited amount of 16S rRNA data. Here, we compared the gut microbiome of captive and wild Rhinopithecus roxellana, whose high degree of dietary specificity makes it a good subject to observe the effects of the captive environment on their gut microbiome, by performing a metagenome-wide association study (MWAS). The Chao1 index was significantly higher in the captive R. roxellana cohort than in the wild cohort, and the Shannon index of captive R. roxellana was higher than that of the wild cohort but the difference was not significant. A significantly increased ratio of Prevotella/Bacteroides, which revealed an increased ability to digest simple carbohydrates, was found in the captive cohort. A significant decrease in the abundance of Firmicutes and enrichment of genes related to the pentose phosphate pathway were noted in the captive cohort, indicating a decreased ability of captive monkeys to digest fiber. Additionally, genes required for glutamate biosynthesis were also significantly more abundant in the captive cohort than in the wild cohort. These changes in the gut microbiome correspond to changes in the composition of the diet in captive animals, which has more simple carbohydrates and less crude fiber and protein than the diet of the wild animals. In addition, more unique bacteria in captive R. roxellana were involved in antibiotic resistance (Acinetobacter) and diarrhea (Desulfovibrio piger), and in the prevention of diarrhea (Phascolarctobacterium succinatutens) caused by Clostridioides difficile. Accordingly, our data reveal the cause-and-effect relationships between changes in the exact dietary composition and changes in the gut microbiome on both the structural and functional levels by comparing of captive and wild R. roxellana.

Personality and behavioral changes in Asian elephants (Elephas maximus) following the death of herd members.

Elephants are highly social beings with complex individual personalities. We know that elephants have a general interest in death, investigating carcasses, not just limited to kin; however, research does not explore in depth whether individuals change their behavior or personality following traumatic events, such as the death of a conspecific. Within a captive herd of Asian elephants (Elephas maximus) housed at Chester Zoo, UK, we measured social behavior and proximity and personality using the Ten-Item Personality Inventory, and found age-related and relationship-related changes in both behavior and personality following the deaths of herd members. Overall, the herd spent less time socializing and engaging in affiliative behaviors following the death of the adult female when compared to baseline data, yet spent more time engaging in these behaviors after the death of two calves. The death of the central female had a dramatic impact on her infant calf, resulting in increasingly withdrawn behavior, yet had the opposite effect on her adult daughter, who subsequently established a more integrated role within the herd. Emotional Stability fell in the motherless calf but rose in an adult female, who had lost her adult daughter, but had a new calf to care for. We suggest that the greater impact on the behavior and personality of surviving herd members following the deaths of calves, compared to an adult member, attests to the significance of the unifying role played by calves within an elephant herd.

Foraging enrichment alleviates oral repetitive behaviors in captive red-tailed black cockatoos (Calyptorhynchus banksii).

The relationship between inadequate foraging opportunities and the expression of oral repetitive behaviors has been well documented in many production animal species. However, this relationship has been less-well examined in zoo-housed animals, particularly avian species. The expression of oral repetitive behavior may embody a frustrated foraging response, and may therefore be alleviated with the provision of foraging enrichment. In this study, we examined the effect of different foraging-based enrichment items on a group of captive red-tailed black cockatoos who were previously observed performing oral repetitive behavior. A group of six cockatoos were presented with five foraging enrichment conditions (no enrichment (control), sliced cucumber, fresh grass, baffle cages, and millet discs). Baseline activity budgets were established over a 10-day preintervention period and interventions were then presented systematically over a 25-day experimental period. This study demonstrated that the provision of foraging interventions effectively increased the median percentage of time spent foraging compared to control conditions (range, 5.0-31.7% across interventions vs. 5.0% for control), with two of the interventions; grass and millet discs, significantly decreasing the expression of oral repetitive behaviors (control = 16.6 vs. 8.3% for both grass and millet discs). Finally, a rapid-scoring method utilized by zookeepers during the study proved to be a useful proxy for the amount of time the cockatoos spent interacting with the foraging interventions and overall time spent foraging.

Fecal microbiota of captive Antillean manatee Trichechus manatus manatus.

Herbivorous animals have unique intestinal microbiota that greatly helps with plant digestion in the host; however, knowledge on the microbiota of marine herbivores is limited. To better understand the taxonomy of intestinal microbiota in manatees, and the possible effects of captive conditions on that, we characterized the fecal microbiota of captive Antillean manatee Trichechus manatus manatus and compared the bacterial community with that of wild Florida manatees Trichechus manatus latirostris. Fecal samples were collected from four captive Antillean manatees in Ocean Expo Park, Okinawa, Japan. The high-quality sequences of the V3-V4 region of bacterial 16S rRNA obtained using an Illumina MiSeq platform were assigned to 16 bacterial phyla, and the most dominant was Firmicutes (84.05 ± 3.50%), followed by Bacteroidetes (8.60 ± 1.71%). Seven of the top 20 bacterial genera were responsible for hydrolyzing cellulose and metabolizing bile acid. The microbiota composition was remarkably different from that found in wild Florida manatees and more diverse than the composition in wild Florida manatees; hence, this result may be dependent on a captive environment. Our results highlight the unique intestinal microbiota in captive manatees, reflecting their diet and possibly an impact of the captive environment.