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1.
PeerJ ; 12: e17348, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38770098

RESUMO

Lake Baikal is one of the largest and oldest freshwater reservoirs on the planet with a huge endemic diversity of amphipods (Amphipoda, Crustacea). These crustaceans have various symbiotic relationships, including the rarely described phenomenon of leech parasitism on amphipods. It is known that leeches feeding on hemolymph of crustacean hosts can influence their physiology, especially under stressful conditions. Here we show that leeches Baicalobdella torquata (Grube, 1871) found on gills of Eulimnogammarus verrucosus (Gerstfeldt, 1858), one of the most abundant amphipods in the Baikal littoral zone, indeed feed on the hemolymph of their host. However, the leech infection had no effect on immune parameters such as hemocyte concentration or phenoloxidase activity and also did not affect glycogen content. The intensity of hemocyte reaction to foreign bodies in a primary culture was identical between leech-free and leech-infected animals. Artificial infection with leeches also had only a subtle effect on the course of a model microbial infection in terms of hemocyte concentration and composition. Despite we cannot fully exclude deleterious effects of the parasites, our study indicates a low influence of a few leeches on E. verrucosus and shows that leech-infected amphipods can be used at least for some types of ecophysiological experiments.


Assuntos
Anfípodes , Hemócitos , Hemolinfa , Lagos , Sanguessugas , Animais , Anfípodes/imunologia , Anfípodes/parasitologia , Hemolinfa/imunologia , Hemolinfa/parasitologia , Sanguessugas/imunologia , Lagos/parasitologia , Hemócitos/imunologia , Imunidade Celular , Sibéria , Interações Hospedeiro-Parasita/imunologia
2.
Sci Rep ; 14(1): 10681, 2024 05 09.
Artigo em Inglês | MEDLINE | ID: mdl-38724542

RESUMO

The organic enrichment effects on the meiofauna and nematofauna were assessed for field sediment and other experimental ones enriched with organic matters conducted in the laboratory for 4 weeks. Also, dissolved oxygen (DO) and pH were monitored for each one. The abundance and diversity of meiofaunal groups and nematofauna varied. Strong significant correlations were found between DO and the studied items. Nematoda was the most abundant group in the field sediment and other experimental ones; their counts increased with the increase in organic enrichments and were dominated by deposit feeders. Amphipoda, Ostracoda and predator/omnivore nematodes disappeared in highly organic-enriched sediments. Changes in DO and organic enrichments might be the more attributable reasons for the alteration of the meiobenthic assemblages. The generic compositions of Nematoda provide a good indicator for environmental alterations.


Assuntos
Biodiversidade , Sedimentos Geológicos , Animais , Sedimentos Geológicos/química , Nematoides , Oxigênio/análise , Concentração de Íons de Hidrogênio , Invertebrados , Anfípodes
3.
Aquat Toxicol ; 271: 106935, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38723468

RESUMO

Blood lipid-lowering agents, such as Pravastatin, are among the most frequently used pharmaceuticals released into the aquatic environment. Although their effects on humans are very well understood, their consequences on freshwater organisms are not well known, especially in chronic exposure conditions. Gammarus fossarum is commonly used as sentinel species in ecotoxicology because of its sensitivity to a wide range of environmental contaminants and the availability of standardized bioassays. Moreover, there is an increased interest in linking molecular changes in sentinel species, such as gammarids, to observed toxic effects. Here, we performed a reproductive toxicity assay on females exposed to different concentrations of pravastatin (30; 300; 3,000 and 30,000 ng L-1) during two successive reproductive cycles and we applied ToF-SIMS imaging to evaluate the effect of pravastatin on lipid homeostasis in gammarids. Reproductive bioassay showed that pravastatin could affect oocyte development in Gammarus fossarum inducing embryotoxicity in the second reproductive cycle. Mass spectrometry imaging highlighted the disruption in vitamin E production in the oocytes of exposed female gammarids at the second reproductive cycle, while limited alterations were observed in other lipid classes, regarding both production and tissue distribution. The results demonstrated the interest of applying spatially resolved lipidomics by mass spectrometry imaging to assess the molecular effects induced by long-term exposure to environmental pharmaceutical residues in sentinel species.


Assuntos
Anfípodes , Pravastatina , Reprodução , Poluentes Químicos da Água , Animais , Pravastatina/toxicidade , Poluentes Químicos da Água/toxicidade , Feminino , Anfípodes/efeitos dos fármacos , Reprodução/efeitos dos fármacos , Espectrometria de Massa de Íon Secundário , Oócitos/efeitos dos fármacos , Vitamina E
4.
Artigo em Inglês | MEDLINE | ID: mdl-38713196

RESUMO

The genus Exophiala is polymorphic, able to transition between yeast, hyphal and pseudohyphal forms. Species of the genus Exophiala are ubiquitous fungi that are distributed in various environments around the world. During a survey of fungal diversity in the gut of amphipods (Floresorchestia amphawaensis and undescribed Dogielinotid amphipods) from the Amphawa estuary, Samut Songkhram province, Thailand, five black yeast strains (DMKU-MG01, DMKU-MG07, DMKU-MG08, DMKU-HG10 and DMKU-FG04) were identified as representing a novel taxon on the basis of a combination of morphological and molecular phylogenetic features. The five strains did not produce filamentous hyphae or pseudohyphae. Only budding yeast cells were observed. On the basis of the phenotypic characteristics and the results of molecular analyses of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) region, the five strains were identified as representing a novel species via applied nucleotide pairwise analysis. They differed from the most closely related species Exophiala alcalophiala by 3.54 % nucleotide substitutions (20 nucleotide substitutions in 572 bp) in the D1/D2 domains of the LSU rRNA gene. Moreover, the sequences of the ITS region of the five strains differed from those of the most closely related species E. alcalophiala, by 7.44-9.62 % nucleotide substitutions, and Exophiala halophiala, by 7.2-7.53 % nucleotide substitutions. The results of phylogenetic analyses based on the concatenated sequences of the ITS regions and the D1/D2 domains of the LSU rRNA gene confirmed that the five black yeast strains represented a single novel species of the genus Exophiala. In this study, Exophiala amphawaensis sp. nov. is proposed to accommodate these strains. The holotype is TBRC 15626T and the isotype is PYCC9020. The MycoBank accession number of the novel species is MB 851477.


Assuntos
Anfípodes , DNA Fúngico , DNA Espaçador Ribossômico , Exophiala , Filogenia , Análise de Sequência de DNA , Animais , Tailândia , Anfípodes/microbiologia , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Exophiala/genética , Exophiala/isolamento & purificação , Exophiala/classificação , Técnicas de Tipagem Micológica , Trato Gastrointestinal/microbiologia
5.
PeerJ ; 12: e17092, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38563012

RESUMO

Live foods such as phytoplankton and zooplankton are essential food sources in aquaculture. Due to their small size, they are suitable for newly hatched larvae. Artemia and rotifer are commonly used live feeds in aquaculture; each feed has a limited dietary value, which is unsuitable for all cultured species. Whereas, copepod and cladocerans species exhibit favorable characteristics that make them viable candidates as sources of essential nutrients for hatchery operations. Due to their jerking movements, it stimulates the feeding response of fish larvae, and their various sizes make them suitable for any fish and crustacean. Even though Artemia is the best live feed due to its proficient nutritional quality, the cost is very expensive, which is about half of the production cost. A recent study suggests the use of amphipods and mysids as alternative live feeds in aquaculture. High nutritional value is present in amphipods and mysids, especially proteins, lipids, and essential fatty acids that are required by fish larvae during early development. Amphipods and mysids are considered abundant in the aquatic ecosystem and have been used by researchers in water toxicity studies. However, the culture of amphipods and mysids has been poorly studied. There is only a small-scale culture under laboratory conditions for scientific research that has been performed. Thus, further research is required to find a way to improve the mass culture of amphipods and mysids that can benefit the aquaculture industry. This review article is intended to provide the available information on amphipods and mysids, including reproductive biology, culture method, nutritional value, feed enhancement, and the importance of them as potential live feed in aquaculture. This article is useful as a guideline for researchers, hatchery operators, and farmers.


Assuntos
Anfípodes , Rotíferos , Animais , Ecossistema , Aquicultura/métodos , Peixes , Larva , Artemia
6.
Anal Chim Acta ; 1304: 342533, 2024 May 22.
Artigo em Inglês | MEDLINE | ID: mdl-38637034

RESUMO

BACKGROUND: DIA (Data-Independent Acquisition) is a powerful technique in Liquid Chromatography coupled with high-resolution tandem Mass Spectrometry (LC-MS/MS) initially developed for proteomics studies and recently emerging in metabolomics and lipidomics. It provides a comprehensive and unbiased coverage of molecules with improved reproducibility and quantitative accuracy compared to Data-Dependent Acquisition (DDA). Combined with the Zeno trap and Electron-Activated Dissociation (EAD), DIA enhances data quality and structural elucidation compared to conventional fragmentation under CID. These tools were applied to study the lipidome and metabolome of the freshwater amphipod Gammarus fossarum, successfully discriminating stages and highlighting significant biological features. Despite being underused, DIA, along with the Zeno trap and EAD, holds great potential for advancing research in the omics field. RESULTS: DIA combined with the Zeno trap enhances detection reproducibility compared to conventional DDA, improving fragmentation spectra quality and putative identifications. LC coupled with Zeno-SWATH-DIA methods were used to characterize molecular changes in reproductive cycle of female gammarids. Multivariate data analysis including Principal Component Analysis and Partial Least Square Discriminant Analysis successfully identified significant features. EAD fragmentation helped to identify unknown features and to confirm their molecular structure using fragmentation spectra database annotation or machine learning. EAD database matching accurately annotated five glycerophospholipids, including the position of double bonds on fatty acid chain moieties. SIRIUS database predicted structures of unknown features based on experimental fragmentation spectra to compensate for database incompleteness. SIGNIFICANCE: Reproducible detection of features and confident identification of putative compounds are pivotal stages within analytical pipelines. The DIA approach combined with Zeno pulsing enhances detection sensitivity and targeted fragmentation with EAD in positive polarity provides orthogonal fragmentation information. In our study, Zeno-DIA and EAD thereby facilitated a comprehensive and insightful exploration of pertinent biological molecules associated with the reproductive cycle of gammarids. The developed methodology holds great promises for identifying informative biomarkers on the health status of an environmental sentinel species.


Assuntos
Anfípodes , Lipidômica , Animais , Feminino , Cromatografia Líquida/métodos , Espectrometria de Massas em Tandem/métodos , Elétrons , Muda , Reprodutibilidade dos Testes , Metaboloma , Aprendizado de Máquina
7.
Mar Pollut Bull ; 202: 116369, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38640762

RESUMO

Per- and polyfluoroalkyl substances (PFAS) are a group of thousands of highly persistent anthropogenic chemicals widely used in many industries. Therefore, they are, ubiquitously present in various types of environments. Despite their omnipresence, ecotoxicological studies of most PFAS are scarce, and those available often assess the effects of long chain PFAS. In this study, we present the results of an exposure experiment in which wild aquatic amphipod Gammarus spp. was exposed to the short chain perfluorinated substance perfluorobutanoic acid (PFBA) at very low and environmentally relevant concentrations of 0, 10 and 100 ng/L. The exposure lasted for 12 days, and food intake and non-reproductive behavior were analyzed. Exposure to 10 and 100 ng/L PFBA resulted in a lower consumption of food during exposure but no effect on behavior was found.


Assuntos
Anfípodes , Ingestão de Alimentos , Fluorocarbonos , Poluentes Químicos da Água , Animais , Anfípodes/fisiologia , Anfípodes/efeitos dos fármacos , Poluentes Químicos da Água/toxicidade
8.
Zoology (Jena) ; 163: 126157, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38428124

RESUMO

The evolution of the tongue in tetrapods is associated with feeding in the terrestrial environment. This study analyzes the tongue morphology of two closely related frog species, Telmatobius oxycephalus and T. rubigo, which exhibit contrasting feeding mechanisms. Telmatobius oxycephalus, a semi-aquatic species, relies on its tongue to capture terrestrial prey whereas T. rubigo, a secondarily aquatic species, uses suction feeding not involving the tongue. Through anatomical, histological and scanning electron microscopy analyses, we revealed remarkable differences in tongue morphology between these species. Telmatobius oxycephalus exhibits a well-developed tongue whose dorsal epithelium has numerous and slender filiform papillae. The epithelial cells of the papillae are protruded and have a complex array of microridges. In contrast, T. rubigo possesses a reduced tongue with flat and less numerous filiform papillae. The epithelial cells are completely flat and lack microridges. These findings highlight the remarkable adaptability of lingual morphology in Telmatobius to respond to the contrasting ecological niches and prey capture mechanisms. This study sheds light on the relationship between tongue shape and the different functional demands, contributing to our understanding of the evolution of prey capture mechanisms in amphibians.


Assuntos
Anfípodes , Compostos Férricos , Papilas Gustativas , Animais , Água , Língua , Papilas Gustativas/anatomia & histologia , Anuros , Microscopia Eletrônica de Varredura
9.
Arch Environ Contam Toxicol ; 86(3): 249-261, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38494559

RESUMO

Selenium (Se) bioaccumulation and toxicity in aquatic vertebrates have been thoroughly investigated. Limited information is available on Se bioaccumulation at the base of aquatic food webs. In this study, we evaluated Se bioaccumulation in two benthic macroinvertebrates (BMI), Hyalella azteca and Chironomus dilutus raised in the laboratory and caged in-situ to a Canadian boreal lake e (i.e., McClean Lake) that receives continuous low-level inputs of Se (< 1 µg/L) from a uranium mill. Additional Se bioaccumulation assays were conducted in the laboratory with these BMI to (i) confirm field results, (ii) compare Se bioaccumulation in lab-read and native H. azteca populations and (iii) identify the major Se exposure pathway (surface water, top 1 cm and top 2-3 cm sediment layers) leading to Se bioaccumulation in H. azteca. Field and laboratory studies indicated overall comparable Se bioaccumulation and trophic transfer factors (TTFs) in co-exposed H. azteca (whole-body Se 0.9-3.1 µg/g d.w; TTFs 0.6-6.3) and C. dilutus (whole-body Se at 0.7-3.2 µg Se/g d.w.; TTFs 0.7-3.4). Native and lab-reared H. azteca populations exposed to sediment and periphyton from McClean Lake exhibited similar Se uptake and bioaccumulation (NLR, p = 0.003; 4.1 ± 0.8 µg Se/g d.w), demonstrating that lab-reared organisms are good surrogates to assess on-site Se bioaccumulation potential. The greater Se concentrations in H. azteca exposed to the top 1-3 cm sediment layer relative to waterborne exposure, corroborates the importance of the sediment-detrital pathway leading to greater Se bioaccumulation potential to higher trophic levels via BMI.


Assuntos
Anfípodes , Formigas , Chironomidae , Selênio , Poluentes Químicos da Água , Animais , Selênio/toxicidade , Selênio/metabolismo , Chironomidae/metabolismo , Bioacumulação , Canadá , Poluentes Químicos da Água/toxicidade , Poluentes Químicos da Água/metabolismo , Sedimentos Geológicos
10.
J Exp Biol ; 227(8)2024 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-38516876

RESUMO

Artificial light at night (ALAN) is a growing environmental problem influencing the fitness of individuals through effects on their physiology and behaviour. Research on animals has primarily focused on effects on behaviour during the night, whereas less is known about effects transferred to daytime. Here, we investigated in the lab the impact of ALAN on the mating behaviour of an ecologically important freshwater amphipod, Gammarus pulex, during both daytime and nighttime. We manipulated the presence of ALAN and the intensity of male-male competition for access to females, and found the impact of ALAN on mating activity to be stronger during daytime than during nighttime, independent of male-male competition. At night, ALAN only reduced the probability of precopula pair formation, while during the daytime, it both decreased general activity and increased the probability of pair separation after pair formation. Thus, ALAN reduced mating success in G. pulex not only directly, through effects on mating behaviour at night, but also indirectly through a carry-over effect on daytime activity and the ability to remain in precopula. These results emphasise the importance of considering delayed effects of ALAN on organisms, including daytime activities that can be more important fitness determinants than nighttime activities.


Assuntos
Anfípodes , Humanos , Animais , Feminino , Masculino , Poluição Luminosa , Comportamento Animal/fisiologia , Reprodução , Luz
11.
J Invertebr Pathol ; 204: 108096, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38494086

RESUMO

The Mininucleoviridae are crustacean-infecting viruses thought to drive mortality across aquatic biomes. Three have been characterised from Carcinus maenas, Panulirus argus, and Dikerogammarus haemobaphes. We screened 202 SRA datasets (NCBI) for novel mininucleoviruses from 44 amphipod species. Three metatranscriptome datasets from Gammarus lacustris contained sequences with similarity to Dikerogammarus haemobaphes mininucleovirus. Assembly resulted in 19 transcripts, 16 were putatively polycistronic. The putative Gammarus lacustris mininucleovirus shares 46 homologues with other mininucleoviruses (similarity range: 24.07 - 78.2 %). The transcripts from this putative virus highlight its likely association with the Mininucleoviridae.


Assuntos
Anfípodes , Vírus de DNA , Transcriptoma , Animais , Vírus de DNA/genética , Anfípodes/virologia , Anfípodes/genética , Filogenia , Genoma Viral
12.
Artigo em Inglês | MEDLINE | ID: mdl-38452970

RESUMO

Temperature and mineralization are among the most important environmental factors affecting all processes of aquatic ecosystems, including geographical distribution of water animals. Previously we showed that a brackish water population of Gammarus lacustris, a widespread amphipod, demonstrates substantially higher thermotolerance than a freshwater population. A possible reason for this difference is the fact that brackish water conditions are closer to internal media mineralization. Here we aimed to test this hypothesis and relate the observed effects in animal survival under the heat shock to the status of cellular defence systems. We acclimated four groups of amphipods from the same freshwater population to 0.5 ‰ and 15 ‰ at the temperatures of 6°Ð¡ or 15°Ð¡. Acclimation at 6°Ð¡, but not at 15°Ð¡, to 15 ‰ significantly increased resistance of the amphipods to heat shock at 30°C. At 6°Ð¡ activities of antioxidant enzymes and levels of the lipid peroxidation products in G. lacustris did not react to the increase in mineralization and the heat shock, while the level of HSP70 elevated two-fold in amphipods acclimated to mineralization of 15 ‰ compared to animals acclimated to 0.5 ‰. Thus, the observed increase in thermotolerance could be explained by the higher initial level of HSP70 and potentially other heat shock proteins caused by a less energy-demanding, more isotonic level.


Assuntos
Anfípodes , Termotolerância , Animais , Anfípodes/metabolismo , Ecossistema , Aclimatação , Água Doce , Proteínas de Choque Térmico HSP70/metabolismo
13.
Environ Toxicol Chem ; 43(5): 1047-1061, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38450757

RESUMO

Anthropogenically modified microparticles including microplastics are present in municipal wastewater treatment plant (WWTP) effluents; however, it is unclear whether biotic exposures are elevated downstream of these outfalls. In the fall of 2019, the present study examined whether microparticle levels in resident fish, environmental samples, and caged organisms were elevated near the Waterloo and Kitchener WWTP outfalls along the Grand River, Ontario, Canada. Wild rainbow darters (Etheostoma caeruleum) were collected from a total of 10 sites upstream and downstream of both WWTPs, along with surface water and sediment samples to assess spatial patterns over an approximately 70-km river stretch. Amphipods (Hyalella azteca), fluted-shell mussels (Lasmigona costata), and rainbow trout (Oncorhynchus mykiss) were also caged upstream and downstream of one WWTP for 14 or 28 days. Whole amphipods, fish digestive tracts, and mussel tissues (hemolymph, digestive glands, gills) were digested with potassium hydroxide, whereas environmental samples were processed using filtration and density separation. Visual identification, measurement, and chemical confirmation (subset only) of microparticles were completed. Elevated abiotic microparticles were found at several upstream reference sites as well as at one or both wastewater-impacted sites. Microparticles in amphipods, all mussel tissues, and wild fish did not show patterns indicative of increased exposures downstream of effluent discharges. In contrast, elevated microparticle counts were found in trout caged directly downstream of the outfall. Across all samples, cellulose fibers (mainly blue and clear colors) were the most common. Overall, results suggest little influence of WWTP effluents on microparticles in biota but rather a ubiquitous presence across most sites that indicates the importance of other point and nonpoint sources to this system. Environ Toxicol Chem 2024;43:1047-1061. © 2024 His Majesty the King in Right of Canada and The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC. Reproduced with the permission of the Minister of Environment and Climate Change Canada.


Assuntos
Bivalves , Monitoramento Ambiental , Sedimentos Geológicos , Águas Residuárias , Poluentes Químicos da Água , Animais , Poluentes Químicos da Água/análise , Águas Residuárias/química , Sedimentos Geológicos/química , Anfípodes , Microplásticos/análise , Biota , Ontário , Oncorhynchus mykiss , Eliminação de Resíduos Líquidos , Rios/química
14.
J Evol Biol ; 37(5): 487-500, 2024 May 06.
Artigo em Inglês | MEDLINE | ID: mdl-38483086

RESUMO

Sexual dimorphism can evolve in response to sex-specific selection pressures that vary across habitats. We studied sexual differences in subterranean amphipods Niphargus living in shallow subterranean habitats (close to the surface), cave streams (intermediate), and cave lakes (deepest and most isolated). These three habitats differ because at greater depths there is lower food availability, reduced predation, and weaker seasonality. Additionally, species near the surface have a near-even adult sex ratio (ASR), whereas species from cave lakes have a female-biased ASR. We hypothesized (a) a decrease in sexual dimorphism from shallow subterranean habitats to cave lake species because of weaker sexual selection derived from changes in the ASR and (b) an increase in female body size in cave lakes because of stronger fecundity selection on account of oligotrophy, reduced predation, and weaker seasonality. We measured body size and two sexually dimorphic abdominal appendages for all 31 species and several behaviours related to male competition (activity, risk-taking, exploration) for 12 species. Species with an equal ASR that live close to the surface exhibited sexual dimorphism in all three morphological traits, but not in behaviour. The body size of females increased from the surface to cave lakes, but no such trend was observed in males. In cave lake species, males and females differed neither morphologically nor behaviourally. Our results are consistent with the possibility that sexual and fecundity selection covary across the three habitats, which indirectly and directly, respectively, shape the degree of sexual dimorphism in Niphargus species.


Assuntos
Anfípodes , Ecossistema , Caracteres Sexuais , Animais , Feminino , Masculino , Anfípodes/fisiologia , Anfípodes/anatomia & histologia , Tamanho Corporal , Lagos , Razão de Masculinidade
15.
Anal Bioanal Chem ; 416(12): 2893-2911, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38492024

RESUMO

The past decades have marked the rise of metabolomics and lipidomics as the -omics sciences which reflect the most phenotypes in living systems. Mass spectrometry-based approaches are acknowledged for both quantification and identification of molecular signatures, the latter relying primarily on fragmentation spectra interpretation. However, the high structural diversity of biological small molecules poses a considerable challenge in compound annotation. Feature-based molecular networking (FBMN) combined with database searches currently sets the gold standard for annotation of large datasets. Nevertheless, FBMN is usually based on collision-induced dissociation (CID) data, which may lead to unsatisfying information. The use of alternative fragmentation methods, such as electron-activated dissociation (EAD), is undergoing a re-evaluation for the annotation of small molecules, as it gives access to additional fragmentation routes. In this study, we apply the performances of data-dependent acquisition mass spectrometry (DDA-MS) under CID and EAD fragmentation along with FBMN construction, to perform extensive compound annotation in the crude extracts of the freshwater sentinel organism Gammarus fossarum. We discuss the analytical aspects of the use of the two fragmentation modes, perform a general comparison of the information delivered, and compare the CID and EAD fragmentation pathways for specific classes of compounds, including previously unstudied species. In addition, we discuss the potential use of FBMN constructed with EAD fragmentation spectra to improve lipid annotation, compared to the classic CID-based networks. Our approach has enabled higher confidence annotations and finer structure characterization of 823 features, including both metabolites and lipids detected in G. fossarum extracts.


Assuntos
Anfípodes , Lipídeos , Metabolômica , Animais , Anfípodes/metabolismo , Anfípodes/química , Lipídeos/química , Lipídeos/análise , Metabolômica/métodos , Lipidômica/métodos , Espectrometria de Massas/métodos , Espécies Sentinelas/metabolismo , Elétrons
16.
BMC Genomics ; 25(1): 298, 2024 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-38509489

RESUMO

Mitochondrial genomes play important roles in studying genome evolution, phylogenetic analyses, and species identification. Amphipods (Class Malacostraca, Order Amphipoda) are one of the most ecologically diverse crustacean groups occurring in a diverse array of aquatic and terrestrial environments globally, from freshwater streams and lakes to groundwater aquifers and the deep sea, but we have a limited understanding of how habitat influences the molecular evolution of mitochondrial energy metabolism. Subterranean amphipods likely experience different evolutionary pressures on energy management compared to surface-dwelling taxa that generally encounter higher levels of predation and energy resources and live in more variable environments. In this study, we compared the mitogenomes, including the 13 protein-coding genes involved in the oxidative phosphorylation (OXPHOS) pathway, of surface and subterranean amphipods to uncover potentially different molecular signals of energy metabolism between surface and subterranean environments in this diverse crustacean group. We compared base composition, codon usage, gene order rearrangement, conducted comparative mitogenomic and phylogenomic analyses, and examined evolutionary signals of 35 amphipod mitogenomes representing 13 families, with an emphasis on Crangonyctidae. Mitogenome size, AT content, GC-skew, gene order, uncommon start codons, location of putative control region (CR), length of rrnL and intergenic spacers differed between surface and subterranean amphipods. Among crangonyctid amphipods, the spring-dwelling Crangonyx forbesi exhibited a unique gene order, a long nad5 locus, longer rrnL and rrnS loci, and unconventional start codons. Evidence of directional selection was detected in several protein-encoding genes of the OXPHOS pathway in the mitogenomes of surface amphipods, while a signal of purifying selection was more prominent in subterranean species, which is consistent with the hypothesis that the mitogenome of surface-adapted species has evolved in response to a more energy demanding environment compared to subterranean amphipods. Overall, gene order, locations of non-coding regions, and base-substitution rates points to habitat as an important factor influencing the evolution of amphipod mitogenomes.


Assuntos
Anfípodes , Genoma Mitocondrial , Humanos , Animais , Anfípodes/genética , Filogenia , Códon de Iniciação , Evolução Molecular
17.
Zootaxa ; 5410(4): 495-518, 2024 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-38480229

RESUMO

The taxonomic analysis of subfamily Pleustoidinae Bousfield & Hendrycks, 1994 is performed. A review of subfamily Pleustoidinae from the shelf of Sakhalin Island and adjacent water area based on all literature and own data is provided. The diagnoses of the subfamily Pleustoidinae and the genus Pleustoides Gurjanova, 1972 have been clarified. Based on new material, the new species Pleustoides tridens sp. nov. is described from the shelf of Sakhalin Island. The species P. ochoticus Gurjanova, 1972 is re-described and its status is clarified. A key to the amphipod of the genus Pleustoides is given.


Assuntos
Anfípodes , Animais , Ásia Oriental , Federação Russa
18.
Zootaxa ; 5410(3): 376-383, 2024 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-38480237

RESUMO

A new species of the genus Parhyale, Stebbing 1897 was collected from the intertidal region of Chilika Lagoon associated with the seaweed Gracilaria sp. Parhyale odian sp. nov. differs from other species of the genus by having a stout robust seta on the surface of the propodus near to dactyl hinge of male gnathopod 1. With the new description of P. odian sp. nov., the global species number in the genus rises to 16.


Assuntos
Anfípodes , Masculino , Animais , Índia
19.
Zootaxa ; 5403(3): 331-345, 2024 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-38480435

RESUMO

In this study, a new species of Hyalella is described from southern region of Brazil. Hyalella jaboticabensis n. sp. was recorded in the municipality of Jaboticaba, northwest region of state of the Rio Grande do Sul, southern Brazil. This species is characterized by showing smooth body surface, epimeral plates not acuminated, inner face of the gnathopod 1 with nine or ten serrate setae and some simple setae (six to eight), inner ramus of uropod 1 of males with one short curved seta, peduncle of the uropod 3 with six cuspidate setae with an accessory seta and two or three cuspidate setae on the rami, telson as long as wide (square) with six to eight short and long cuspidate setae with an accessory seta. This new description increases the Brazilian known diversity of species of Hyalella to 42 (25 to southern Brazilian region) and 108 species in the Americas. It is noting that it is crucial to know the complete diversity of Hyalella genus, and to consider conservation measures to protect species like H. jaboticabensis n. sp., endemic to two single small streams.


Assuntos
Anfípodes , Masculino , Animais , Brasil , Água Doce , Rios
20.
Environ Sci Technol ; 58(9): 4392-4403, 2024 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-38362876

RESUMO

Unraveling the mysterious pathways of pollutants to the deepest oceanic realms holds critical importance for assessing the integrity of remote marine ecosystems. This study tracks the transport of pollutants into the depths of the oceans, a key step in protecting the sanctity of these least explored ecosystems. By analyzing hadal trench samples from the Mariana, Mussau, and New Britain trenches, we found the widespread distribution of organophosphate ester (OPE) flame retardants but a complex transport pattern for the OPE in these regions. In the Mariana Trench seawater column, OPE concentrations range between 17.4 and 102 ng L-1, with peaks at depths of 500 and 4000 m, which may be linked to Equatorial Undercurrent and topographic Rossby waves, respectively. Sediments, particularly in Mariana (422 ng g-1 dw), showed high OPE affinity, likely due to organic matter serving as a transport medium, influenced by "solvent switching", "solvent depletion", and "filtering processes". Amphipods in the three trenches had consistent OPE levels (29.1-215 ng g-1 lipid weight), independent of the sediment pollution patterns. The OPEs in these amphipods appeared more linked to surface-dwelling organisms, suggesting the influence of "solvent depletion". This study highlights the need for an improved understanding of deep-sea pollutant sources and transport, urging the establishment of protective measures for these remote marine habitats.


Assuntos
Anfípodes , Poluentes Ambientais , Retardadores de Chama , Animais , Ecossistema , Organofosfatos , Ésteres , Solventes
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