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1.
Emerg Infect Dis ; 30(6): 1245-1248, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38782142

RESUMO

Choanephora infundibulifera is a member of the Mucorales order of fungi. The species is associated with plants as a saprophyte or parasite and may be responsible for spoilage or disease but is an uncommon cause of human infection. We describe C. infundibulifera rhinosinusitis in a young man with leukemia in Tennessee, USA.


Assuntos
Sinusite , Humanos , Masculino , Tennessee , Sinusite/microbiologia , Sinusite/diagnóstico , Sinusite/parasitologia , Leucemia-Linfoma Linfoblástico de Células Precursoras/complicações , Mucormicose/diagnóstico , Mucormicose/microbiologia , Mucormicose/tratamento farmacológico , Mucorales/isolamento & purificação , Mucorales/classificação , Rinite/microbiologia , Rinite/diagnóstico , Adulto , Antifúngicos/uso terapêutico , Rinossinusite
2.
Contrast Media Mol Imaging ; 2022: 4352730, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35115902

RESUMO

Currently, countries across the world are suffering from a prominent viral infection called COVID-19. Most countries are still facing several issues due to this disease, which has resulted in several fatalities. The first COVID-19 wave caused devastation across the world owing to its virulence and led to a massive loss in human lives, impacting the country's economy drastically. A dangerous disease called mucormycosis was discovered worldwide during the second COVID-19 wave, in 2021, which lasted from April to July. The mucormycosis disease is commonly known as "black fungus," which belongs to the fungus family Mucorales. It is usually a rare disease, but the level of destruction caused by the disease is vast and unpredictable. This disease mainly targets people already suffering from other diseases and consuming heavy medication to counter the disease they are suffering from. This is because of the reduction in antibodies in the affected people. Therefore, the patient's body does not have the ability to act against fungus-oriented infections. This black fungus is more commonly identified in patients with coronavirus disease in certain country. The condition frequently manifests on skin, but it can also harm organs such as eyes and brain. This study intends to design a modified neural network logic for an artificial intelligence (AI) strategy with learning principles, called a hybrid learning-based neural network classifier (HLNNC). The proposed method is based on well-known techniques such as convolutional neural network (CNN) and support vector machine (SVM). This article discusses a dataset containing several eye photographs of patients with and without black fungus infection. These images were collected from the real-time records of people afflicted with COVID followed by the black fungus. This proposed HLNNC scheme identifies the black fungus disease based on the following image processing procedures: image acquisition, preprocessing, feature extraction, and classification; these procedures were performed considering the dataset training and testing principles with proper performance analysis. The results of the procedure are provided in a graphical format with the precise specification, and the efficacy of the proposed method is established.


Assuntos
COVID-19/complicações , Coinfecção/microbiologia , Aprendizado Profundo , Mucorales/isolamento & purificação , Mucormicose/epidemiologia , Algoritmos , Comorbidade , Humanos , Processamento de Imagem Assistida por Computador , Índia/epidemiologia , Mucorales/classificação , Mucorales/imunologia , Mucormicose/complicações , Mucormicose/microbiologia , Redes Neurais de Computação , Máquina de Vetores de Suporte , Tratamento Farmacológico da COVID-19
3.
Nat Microbiol ; 6(3): 313-326, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33462434

RESUMO

Fungi of the order Mucorales cause mucormycosis, a lethal infection with an incompletely understood pathogenesis. We demonstrate that Mucorales fungi produce a toxin, which plays a central role in virulence. Polyclonal antibodies against this toxin inhibit its ability to damage human cells in vitro and prevent hypovolemic shock, organ necrosis and death in mice with mucormycosis. Inhibition of the toxin in Rhizopus delemar through RNA interference compromises the ability of the fungus to damage host cells and attenuates virulence in mice. This 17 kDa toxin has structural and functional features of the plant toxin ricin, including the ability to inhibit protein synthesis through its N-glycosylase activity, the existence of a motif that mediates vascular leak and a lectin sequence. Antibodies against the toxin inhibit R. delemar- or toxin-mediated vascular permeability in vitro and cross react with ricin. A monoclonal anti-ricin B chain antibody binds to the toxin and also inhibits its ability to cause vascular permeability. Therefore, we propose the name 'mucoricin' for this toxin. Not only is mucoricin important in the pathogenesis of mucormycosis but our data suggest that a ricin-like toxin is produced by organisms beyond the plant and bacterial kingdoms. Importantly, mucoricin should be a promising therapeutic target.


Assuntos
Mucorales/patogenicidade , Mucormicose/patologia , Micotoxinas/metabolismo , Ricina/metabolismo , Animais , Antitoxinas/imunologia , Antitoxinas/farmacologia , Antitoxinas/uso terapêutico , Apoptose , Permeabilidade Capilar , Células Cultivadas , Reações Cruzadas , Humanos , Hifas/química , Hifas/patogenicidade , Lectinas/metabolismo , Camundongos , Mucorales/química , Mucorales/classificação , Mucorales/genética , Mucormicose/microbiologia , Mucormicose/prevenção & controle , Micotoxinas/química , Micotoxinas/genética , Micotoxinas/imunologia , Necrose , Interferência de RNA , Rhizopus/química , Rhizopus/genética , Rhizopus/patogenicidade , Proteínas Inativadoras de Ribossomos/metabolismo , Ricina/química , Ricina/imunologia , Virulência/efeitos dos fármacos , Virulência/genética
4.
J Appl Microbiol ; 131(1): 360-374, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33277790

RESUMO

AIMS: Root rot caused by a group of fungi is a serious disease in mulberry. This study aims to identify and characterize Rhizopus oryzae and other fungal species associated with root rot of mulberry in India. METHODS AND RESULTS: Rotted root samples were collected from the mulberry gardens from four states of Southern India. The majority of the isolates identified were R. oryzae, and others were saprophytic fungi, less abundant to occasional. Two methods of inoculations were tested to confirm the pathogenicity of the selected isolates and R. oryzae was found to be pathogenic on susceptible mulberry genotypes RC2 and SRDC-1. Multi gene phylogenetic analyses using the internal transcribed spacer region (ITS), actin (ACT) and translation elongation factor 1-α (TEF), identified the isolates as R. oryzae. Additionally, Ovatospora brasiliensis, Amesia nigricolor, Gongronella butleri, Myrmecridium schulzeri, Scedosporium boydii, Graphium euwallacea, Clonostachys rosea andTalaromyces spp. were also identified. CONCLUSION: This study revealed the existence of eleven species of fungi including the first report of R. oryzae and the occurrence of weak pathogens or saprophytes that are associated with the root rot of mulberry in India. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report of R. oryzae causing Rhizopus rot of mulberry in India. Moreover, the occurrence of saprophytes associated with root rot of mulberry was identified. Further studies should focus more on the ability of these species to generate secondary metabolites and extracellular lytic enzymes as they are beneficial for the management of root rot disease.


Assuntos
Fungos/isolamento & purificação , Morus/microbiologia , Doenças das Plantas/microbiologia , Rhizopus oryzae/isolamento & purificação , Rhizopus oryzae/patogenicidade , Ascomicetos/classificação , Ascomicetos/isolamento & purificação , Fungos/classificação , Fungos/genética , Hypocreales/classificação , Hypocreales/isolamento & purificação , Índia , Mucorales/classificação , Mucorales/isolamento & purificação , Fator 1 de Elongação de Peptídeos/genética , Filogenia , Proteínas de Plantas/genética , Raízes de Plantas/microbiologia , Rhizopus oryzae/classificação , Rhizopus oryzae/genética , Scedosporium/classificação , Scedosporium/isolamento & purificação , Sordariales/classificação , Sordariales/isolamento & purificação , Virulência
5.
Microb Genom ; 6(12)2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-33245689

RESUMO

Mucormycoses are invasive infections by Rhizopus species and other Mucorales. Over 10 months, four solid organ transplant (SOT) recipients at our centre developed mucormycosis due to Rhizopus microsporus (n=2), R. arrhizus (n=1) or Lichtheimia corymbifera (n=1), at a median 31.5 days (range: 13-34) post-admission. We performed whole genome sequencing (WGS) on 72 Mucorales isolates (45 R. arrhizus, 19 R. delemar, six R. microsporus, two Lichtheimia species) from these patients, from five patients with community-acquired mucormycosis, and from hospital and regional environments. Isolates were compared by core protein phylogeny and global genomic features, including genome size, guanine-cytosine percentages, shared protein families and paralogue expansions. Patient isolates fell into six core phylogenetic lineages (clades). Phylogenetic and genomic similarities of R. microsporus isolates recovered 7 months apart from two SOT recipients in adjoining hospitals suggested a potential common source exposure. However, isolates from other patients and environmental sites had unique genomes. Many isolates that were indistinguishable by core phylogeny were distinct by one or more global genomic comparisons. Certain clades were recovered throughout the study period, whereas others were found at particular time points. In conclusion, mucormycosis cases could not be genetically linked to a definitive environmental source. Comprehensive genomic analyses eliminated false associations between Mucorales isolates that would have been assigned using core phylogenetic or less extensive genomic comparisons. The genomic diversity of Mucorales mandates that multiple isolates from individual patients and environmental sites undergo WGS during epidemiological investigations. However, exhaustive surveillance of fungal populations in a hospital and surrounding community is probably infeasible.


Assuntos
Infecções Comunitárias Adquiridas/microbiologia , Infecção Hospitalar/microbiologia , Mucorales/classificação , Mucormicose/diagnóstico , Transplantes/microbiologia , Sequenciamento Completo do Genoma/métodos , Composição de Bases , Feminino , Variação Genética , Tamanho do Genoma , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Masculino , Mucorales/genética , Mucorales/isolamento & purificação , Mucormicose/microbiologia , Filogenia
6.
Mycopathologia ; 185(3): 555-567, 2020 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32388712

RESUMO

BACKGROUND: Lichtheimia species are emerging opportunistic fungal pathogens in the Mucorales, causing serious skin and respiratory infections in immunocompromised patients. Established agents are Lichtheimia corymbifera and L. ramosa, while L. ornata is a novel agent. Available data on a species-specific analysis of Lichtheimia infections are limited. METHODS: The first case of a fatal rhino-orbital-cerebral infection in a hematopoietic stem cell transplantation recipient caused by L. ornata is reported; the agent was identified by sequencing the ITS ribosomal region. We reviewed the literature on mucormycosis due to Lichtheimia species between 2009 and 2018, with an analysis of risk factors and epidemiological and clinical data. RESULTS: In addition to our Lichtheimia ornata case, 44 cases of human Lichtheimia were analyzed. Lichtheimia predominated in Europe (68.2%), followed by Asia (16%), and Africa (9%). The most common underlying condition was hematological malignancy (36.3%), followed by trauma/major surgery (27.3%), while diabetes mellitus was rare (11.4%). Site of infection was mostly skin and soft tissues (45.5%) and lung (25%), while relatively few cases were disseminated (13.6%) or rhinocerebral (11.4%). Mortality (36.4%) was mainly due to disseminated and rhinocerebral infections. CONCLUSION: In contrast to Rhizopus, the most common agent of mucormycosis recorded in patients with diabetes mellitus, Lichtheimia infections were primarily associated with hematological malignancies and major skin barrier damage. Given the fact that classical rhinocerebral mucormycosis remains difficult to treat, independent of causative species, timely application of amphotericin B accessory to debridement may be required for patient survival.


Assuntos
Hospedeiro Imunocomprometido , Mucorales/patogenicidade , Mucormicose/microbiologia , Adulto , Anemia Aplástica/complicações , Olho/microbiologia , Evolução Fatal , Feminino , Transplante de Células-Tronco Hematopoéticas , Humanos , Testes de Sensibilidade Microbiana , Mucorales/classificação , Mucorales/efeitos dos fármacos , Mucorales/isolamento & purificação , Cavidade Nasal/microbiologia , Infecções Oportunistas/microbiologia , Filogenia
7.
Int J Syst Evol Microbiol ; 70(5): 3475-3482, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32379017

RESUMO

This study describes a novel fungal species belonging to the genus Gongronella. During a previous work focusing on metalaxyl degradation by Mucorales strains, two isolates from vineyard soil samples collected in the Alentejo region, south Portugal, were identified as a putative novel species based on combined molecular and MALDI-TOF MS data. This new species is described here using a polyphasic approach that combines morphology, internal transcribed spacer of ribosomal DNA (ITS) and 28S ribosomal DNA (LSU) sequence data analysis and proteomic profiling by MALDI-TOF MS. Phenotypic and molecular data enabled this novel species to be clearly distinguished from other Gongronella species with results of combined ITS+LSU analysis showing that the Gongronella species is related to Gongronella butleri and Gongronella brasiliensis. Therefore, from the results of morphological and molecular analyses, isolates MUM 10.262 and MUM 10.263 seem to represent a new Gongronella species and the name Gongronella eborensis sp. nov. is proposed, with the ex-type strain MUM 10.262 (=CCMI 1100=CBS 128763).


Assuntos
Mucorales/classificação , Filogenia , Microbiologia do Solo , DNA Espaçador Ribossômico/genética , Mucorales/isolamento & purificação , Técnicas de Tipagem Micológica , Portugal , Proteômica , RNA Ribossômico 28S/genética , Análise de Sequência de DNA , Vitis
8.
Microbes Infect ; 22(8): 331-339, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-31962135

RESUMO

Platelets are meanwhile recognized as versatile elements within the immune system and appear to play a key role in the innate immune response to pathogens including fungi. Previous experiments revealed platelet activation by direct contact with the hyphal-associated polysaccharide galactosaminogalactan (GAG). Since secreted fungal products may also be relevant and trigger immune reactions or thrombosis, we screened culture supernatants (SN) of human-pathogenic fungi for their capacity to activate platelets. For that purpose, platelets were incubated with SN from various fungal species; platelet activation and GAG deposition on the surface of platelets were detected by flow cytometry and electron and confocal microscopy, Culture supernatants of Aspergillus fumigatus and flavus isolates were potent platelet stimulators in a dose- and time-dependent manner, while SN of other Aspergillus species and all tested mucormycete species did not significantly induce platelet activation. The capacity of culture SN to activate platelets was dependent on fungal production of GAG and deposition of secreted GAG on the platelet surface; supernatants from mucormycetes or mutants of A. fumigatus lacking GAG secretion did not affect platelet activity. These results suggest that invading fungi can stimulate platelets not only locally through direct interactions with fungal hyphae, but can also act over a certain distance through secreted GAG.


Assuntos
Aspergillus/metabolismo , Polissacarídeos Fúngicos/metabolismo , Ativação Plaquetária , Polissacarídeos/metabolismo , Aspergillus/classificação , Plaquetas/metabolismo , Meios de Cultivo Condicionados/metabolismo , Humanos , Imunidade Inata , Mucorales/classificação , Mucorales/metabolismo , Especificidade da Espécie
9.
Mycologia ; 112(2): 309-328, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-31967533

RESUMO

Species of Endogonaceae (Endogonales, Mucoromycotina) are characterized by the formation of relatively large sporocarps and zygosporangia. Numerous species in this family remain undescribed or have unclear phylogenetic positions. In Asia specifically, the species diversity of this family is almost completely unknown. However, many mycobionts of bryophytes belonging to several novel clades in Endogonaceae have recently been identified phylogenetically. Therefore, establishing a robust taxonomic system for this family is essential. We obtained numerous sporocarps of undescribed Endogonaceae-like species from the Japanese islands. Morphological observation and multilocus phylogenetic analysis of nuc 18S rDNA (18S), nuc 28S rDNA (28S), and portions of two nuclear protein-coding regions-translation elongation factor 1-alpha (tef1) and RNA polymerase II large subunit (rpb1)-from these species resulted in the description of one new species each of Endogone and Jimgerdemannia and two new species of Vinositunica, gen. nov. Because Vinositunica is characterized by purplish sporocarps and red-wine-colored chlamydospores up to 700 µm in diameter, we emended the definition of Endogonaceae.


Assuntos
Briófitas/microbiologia , Mucorales , DNA Fúngico , DNA Espaçador Ribossômico , Carpóforos/citologia , Genes Fúngicos , Japão , Mucorales/classificação , Mucorales/citologia , Mucorales/genética , Mucorales/isolamento & purificação , Fator 1 de Elongação de Peptídeos/genética , Filogenia , Doenças das Plantas/microbiologia , RNA Ribossômico 28S/genética , Esporos Fúngicos/citologia
10.
Med Mycol ; 58(4): 425-433, 2020 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-31342074

RESUMO

Apophysomyces elegans species complex is an important cause of cutaneous mucormycosis in India. However, majority of those cases are reported as case reports only. We desired to analyze our patients with Apophysomyces infection reported over 25 years (1992-2017) to understand the epidemiology, management, and outcome of the disease. During the study period 24 cases were reported, and the majority (95.8%) of them presented with necrotizing fasciitis following accidental/surgical/iatrogenic trauma. One patient presented with continuous ambulatory peritoneal dialysis (CAPD) related peritonitis. Healthcare related Apophysomyces infection was noted in 29.2% patients. In addition to trauma, comorbidities were noted in 37.5% patients (type 2diabetes mellitus-6, chronic alcoholism-2, and chronic kidney disease-1). Of the 24 isolates, 11 isolates starting from year 2014 were identified as Apophysomyces variabilis by molecular methods. Majority (95.8%) of the patients were managed surgically with or without amphotericin B deoxycholate therapy, while one patient was treated with amphotericin B deoxycholate alone. Among 24 patients, seven (29.1%) recovered, six (25%) patients could not afford antifungal management and left the hospital against medical advice, and 11 (45.9%) patients died.The present case series highlights that necrotizing fasciitis caused by A. variabilis is prevalent in India, and the disease may be healthcare related. Although diagnosis is not difficult, awareness among surgeons is still limited about the infection, leading to a delay in sending samples to the mycology laboratory. Apophysomyces infection must be considered in the differential diagnosis in apatient with progressive necrosis of a wound who is not responding to antibacterial therapy.


Assuntos
Mucorales/patogenicidade , Mucormicose/epidemiologia , Adolescente , Adulto , Idoso , Antifúngicos/uso terapêutico , Comorbidade , Fasciite Necrosante/tratamento farmacológico , Fasciite Necrosante/microbiologia , Feminino , Humanos , Índia/epidemiologia , Masculino , Pessoa de Meia-Idade , Mucorales/classificação , Mucormicose/tratamento farmacológico , Mucormicose/mortalidade , Estudos Retrospectivos , Centros de Atenção Terciária/estatística & dados numéricos , Adulto Jovem
11.
Med Mycol ; 58(1): 118-123, 2020 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-30980083

RESUMO

Mucormycosis is an angio-invasive infection, predominantly acquired by inhalation of sporangiospores from the environment. However, the burden of Mucormycetes sporangiospores in the air is not well studied. We aimed to estimate the burden of Mucormycetes spores in the outdoor and indoor (hospital) environment across different seasons in north India. A total of 380 air samples from outdoor (n = 180) and indoor (n = 200) environment were included in the study. Air samples were suctioned using air sampler (100 l/min) and cultured on Dichloran Rose Bengal Chloramphenicol (DRBC) with benomyl for selective isolation of Mucormycetes. The isolates were identified by phenotypic and genotypic methods. The mean spore count (±SD) of Mucormycetes (cfu/m3) in outdoor samples varied from 0.73 (±0.96) to 8.60 (±5.70) across different seasons. In hospital, the mean spore count varied from 0.68 (±1.07) to 1.12 (±1.07) and 0.88 (±1.01) to 1.72 (±2.17) for air-conditioned wards and non-air-conditioned wards, respectively. Rhizopus arrhizus was the predominant agent isolated from both indoor and outdoor environment followed by Cunninghamella species. We also report a single isolate of the rare mucormycete agent, Apophysomyces variabilis from outdoor environment. The present study highlights the presence of low spore burden of Mucormycetes in outdoor and hospital settings in north India. This study also reports the first isolation of A. variabilis from air samples in the Indian subcontinent.


Assuntos
Microbiologia do Ar , Poluição do Ar em Ambientes Fechados , Hospitais , Mucorales/isolamento & purificação , Estações do Ano , Esporos Fúngicos/isolamento & purificação , Contagem de Colônia Microbiana , Genótipo , Índia , Mucorales/classificação , Fenótipo , Esporos Fúngicos/classificação
12.
Mycopathologia ; 185(5): 765-781, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31734800

RESUMO

The order Mucorales is an ancient group of fungi classified in the subphylum Mucoromycotina. Mucorales are mainly fast-growing saprotrophs that belong to the first colonizers of diverse organic materials and represent a permanent part of the human environment. Several species are able to cause human infections (mucormycoses) predominantly in patients with impaired immune system, diabetes, or deep trauma. In this review, we compiled 32 reports on community- and hospital-acquired outbreaks caused by Mucorales. The most common source of mucoralean outbreaks was contaminated medical devices that are responsible for 40.7% of the outbreaks followed by contaminated air (31.3%), traumatic inoculation of soil or foreign bodies (9.4%), and the contact (6.2%) or the ingestion (6.2%) of contaminated plant material. The most prevalent species were Rhizopus arrhizus and R. microsporus causing 57% of the outbreaks. The genus Rhizomucor was dominating in outbreaks related to contaminated air while outbreaks of Lichtheimia species and Mucor circinelloides were transmitted by direct contact. Outbreaks with the involvement of several species are reported. Subtyping of strains revealed clonality in two outbreaks and no close relation in two other outbreaks. Based on the existing data, outbreaks of Mucorales can be caused by heterogeneous sources consisting of different strains or different species. Person-to-person transmission cannot be excluded because Mucorales can sporulate on wounds. For a better understanding and prevention of outbreaks, we need to increase our knowledge on the physiology, ecology, and population structure of outbreak causing species and more subtyping data.


Assuntos
Mucorales , Mucormicose , Infecção Hospitalar/microbiologia , Complicações do Diabetes/microbiologia , Surtos de Doenças , Microbiologia de Alimentos , Humanos , Hospedeiro Imunocomprometido , Tipagem Molecular/métodos , Mucor/crescimento & desenvolvimento , Mucor/isolamento & purificação , Mucor/patogenicidade , Mucorales/classificação , Mucorales/crescimento & desenvolvimento , Mucorales/isolamento & purificação , Mucorales/patogenicidade , Mucormicose/etiologia , Mucormicose/mortalidade , Mucormicose/transmissão , Técnicas de Tipagem Micológica/métodos , Infecções Oportunistas/microbiologia , Rhizomucor/crescimento & desenvolvimento , Rhizomucor/isolamento & purificação , Rhizomucor/patogenicidade , Rhizopus/crescimento & desenvolvimento , Rhizopus/isolamento & purificação , Rhizopus/patogenicidade , Rhizopus oryzae/crescimento & desenvolvimento , Rhizopus oryzae/isolamento & purificação , Rhizopus oryzae/patogenicidade , Ferimentos e Lesões/microbiologia
13.
Transpl Infect Dis ; 21(5): e13163, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31472083

RESUMO

We report three cases of hospital-acquired mucormycosis in heart and lung transplant patients over a 6-month period. Traditional epidemiological investigation tools were used to look for a common link between patients to explain the outbreak. Genome sequencing of each fungal strain was used to supplement the investigation. By disproving a close genetic link between infecting strains of mucormycosis, we were able to conclude the outbreak investigation. Genome sequencing is a novel tool that can be used in addition to traditional epidemiologic investigations to help determine linkage of patients during outbreak investigations.


Assuntos
Infecção Hospitalar/microbiologia , Surtos de Doenças/estatística & dados numéricos , Genoma Fúngico , Mucorales/genética , Mucormicose/microbiologia , Transplantados , Idoso , DNA Fúngico/genética , Transplante de Coração/efeitos adversos , Humanos , Transplante de Pulmão/efeitos adversos , Masculino , Pessoa de Meia-Idade , Mucorales/classificação , Mucormicose/diagnóstico , Análise de Sequência de DNA
14.
Environ Microbiol ; 21(12): 4563-4581, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31330072

RESUMO

Mucormycoses are life-threatening infections that affect patients suffering from immune deficiencies. We performed phagocytosis assays confronting various strains of Lichtheimia species with alveolar macrophages, which form the first line of defence of the innate immune system. To investigate 17 strains from four different continents in a comparative fashion, transmitted light and confocal fluorescence microscopy was applied in combination with automated image analysis. This interdisciplinary approach enabled the objective and quantitative processing of the big volume of image data. Applying machine-learning supported methods, a spontaneous clustering of the strains was revealed in the space of phagocytic measures. This clustering was not driven by measures of fungal morphology but rather by the geographical origin of the fungal strains. Our study illustrates the crucial contribution of machine-learning supported automated image analysis to the qualitative discovery and quantitative comparison of major factors affecting host-pathogen interactions. We found that the phagocytic vulnerability of Lichtheimia species depends on their geographical origin, where strains within each geographic region behaved similarly, but strongly differed amongst the regions. Based on this clustering, we were able to also classify clinical isolates with regard to their potential geographical origin.


Assuntos
Macrófagos Alveolares/imunologia , Mucorales/imunologia , Fagocitose/imunologia , Animais , Aspergillus fumigatus/imunologia , Aspergillus fumigatus/isolamento & purificação , Células Cultivadas , Microbiologia Ambiental , Interações Hospedeiro-Patógeno , Humanos , Processamento de Imagem Assistida por Computador , Camundongos , Tipagem Molecular , Mucorales/classificação , Mucorales/isolamento & purificação , Mucormicose/imunologia , Mucormicose/microbiologia , Filogeografia
15.
J Dairy Sci ; 102(4): 3646-3653, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30799113

RESUMO

Fungal spoilage remains a significant issue in dairy product quality, especially for cultured dairy products such as yogurt formulated without preservatives such as potassium sorbate. Fungal contamination can occur throughout the processing continuum, from the dairy farm environment to the finished product processing environment. As molecular characterization of fungal isolates is used more frequently, we obtained fungal isolates obtained in 2 yogurt processing facilities as part of routine fungal testing of raw materials (e.g., fruit preparations, added ingredients), in-process product samples, environmental samples (e.g., air plates, equipment surfaces such as valves, face plates, air nozzles), and finished product samples, to determine whether internal transcribed spacer (ITS) barcoding data would be helpful to support source tracking of fungal contamination issues. Internal transcribed spacer PCR amplification and sequencing allowed us to classify the 852 isolates from these 2 facilities into 200 unique ITS allelic types (AT), representing the phyla Ascomycota (743 isolates), Basidiomycota (97 isolates), and Mucoromycota (12 isolates). Thirty ITS AT were isolated from both facilities; 62 and 108 ITS AT were isolated from only facility A or only facility B, respectively. Nine ITS AT were each represented by more than 20 isolates; these AT comprised 53% of the 852 isolates. The considerable diversity of fungal isolates even within a single facility illustrates the challenge associated with controlling fungal contamination of dairy products. The ITS barcoding technique, however, did show promise for facilitating the source tracking of fungal contamination, particularly for ITS AT over-represented in a given facility. For example, we found evidence for equipment-specific reservoirs for 2 AT (14 and 219) in facility B. Our data suggest that despite its limited discriminatory power, ITS sequencing can provide initial information that can help trace fungal contamination along the processing continuum. However, development and implementation of discriminatory subtyping methods will be needed to further improve the ability to identify sources of fungal contamination in dairy facilities. Developing and implementing sampling plans that comprehensively capture yeast and mold diversity in a given processing facility remain a considerable challenge.


Assuntos
DNA Fúngico/análise , Manipulação de Alimentos , Microbiologia de Alimentos/métodos , Fungos/genética , Fungos/isolamento & purificação , Iogurte/microbiologia , Alelos , Animais , Ascomicetos/classificação , Ascomicetos/genética , Sequência de Bases , Basidiomycota/classificação , Basidiomycota/genética , DNA Fúngico/química , DNA Intergênico/química , Laticínios/microbiologia , Fungos/classificação , Mucorales/classificação , Mucorales/genética , Ácido Sórbico
16.
Mycoses ; 62(4): 391-398, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30685896

RESUMO

BACKGROUND: Limited data exist for epidemiology and outcomes of various agents causing mucormycosis in various clinical settings from developing countries like India. OBJECTIVES: To study the epidemiology and outcomes of various agents causing mucormycosis in different clinical settings in a tertiary care hospital from South India. PATIENTS AND METHODS: We reviewed details of 184 consecutive patients with culture-proven mucormycosis with consistent clinical syndrome and supporting features from September 2005 to September 2015. RESULTS: The mean age of patients was 50.42 years; 70.97% were male. Unlike developed countries, R microsporus (29/184; 15.7%) and Apophysomyces elegans (20/184; 10.8%) also evolved as important pathogens in addition to R arrhizus in our setting. Paranasal sinuses (136/184; 73.9%) followed by musculoskeletal system (28/184; 15.2%) were the common areas of involvement. Apophysomyces elegans typically produced skin and musculoskeletal disease in immune-competent individuals with trauma (12/20; 60%) and caused significantly lower mortality (P = 0.03). R microsporus was more common in patients with haematological conditions (25% vs 15.7%) and was less frequently a cause for sinusitis than R arrhizus (27.58% vs 10.9%). The overall mortality was 30.97%. Combination therapy with surgery and antifungals offered the best chance for cure. CONCLUSIONS: Agents causing mucormycosis may have unique clinical and epidemiological characteristics.


Assuntos
Antifúngicos/uso terapêutico , Desbridamento , Mucorales/isolamento & purificação , Mucormicose/epidemiologia , Mucormicose/patologia , Adulto , Distribuição por Idade , Idoso , Idoso de 80 Anos ou mais , Criança , Quimioterapia Combinada/métodos , Feminino , Neoplasias Hematológicas/complicações , Humanos , Índia/epidemiologia , Masculino , Pessoa de Meia-Idade , Mucorales/classificação , Mucormicose/mortalidade , Mucormicose/terapia , Distribuição por Sexo , Análise de Sobrevida , Centros de Atenção Terciária , Resultado do Tratamento , Infecção dos Ferimentos/epidemiologia , Infecção dos Ferimentos/mortalidade , Infecção dos Ferimentos/patologia , Infecção dos Ferimentos/terapia , Ferimentos e Lesões/complicações
17.
Mycopathologia ; 184(1): 121-128, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29967971

RESUMO

The Mucorales fungi-formerly classified as the zygomycetes-are environmentally ubiquitous fungi, but generally rare causes of clinical infections. In the immunocompromised host, however, they can cause invasive, rapidly spreading infections that confer a high risk of morbidity and mortality, often despite surgical and antifungal therapy. Patients with extensive burn injuries are particularly susceptible to skin and soft-tissue infections with these organisms. Here, we present a case of Lichtheimia infection in a patient with extensive full-thickness burns that required significant and repeated surgical debridement successfully treated with isavuconazole and adjunctive topical amphotericin B washes. We also review the available literature on contemporary antifungal treatment for Lichtheimia species and related Mucorales fungi.


Assuntos
Queimaduras/complicações , Dermatomicoses/diagnóstico , Dermatomicoses/patologia , Mucorales/isolamento & purificação , Mucormicose/diagnóstico , Mucormicose/patologia , Anfotericina B/administração & dosagem , Antifúngicos/administração & dosagem , Desbridamento , Dermatomicoses/microbiologia , Dermatomicoses/terapia , Humanos , Masculino , Pessoa de Meia-Idade , Mucorales/classificação , Mucormicose/microbiologia , Mucormicose/terapia , Nitrilas/administração & dosagem , Piridinas/administração & dosagem , Resultado do Tratamento , Triazóis/administração & dosagem
18.
Med Mycol ; 57(4): 395-402, 2019 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-30085158

RESUMO

Mucormycosis due to Mucorales is reported at large numbers in uncontrolled diabetics across India, but systematic multicenter epidemiological study has not been published yet. The present prospective study was conducted at four major tertiary care centers of India (two in north and two in south India) during 2013-2015 to compare the epidemiology, treatment strategies and outcome of mucormycosis between the two regions. Molecular techniques were employed to confirm the identity of the isolates or to identify the agent in biopsy samples. A total of 388 proven/probable mucormycosis cases were reported during the study period with overall mortality at 46.7%. Uncontrolled diabetes (n = 172, 56.8%) and trauma (n = 31, 10.2%) were the common risk factors. Overall, Rhizopus arrhizus (n = 124, 51.9%) was the predominant agent identified, followed by Rhizopus microsporus (n = 30, 12.6%), Apophysomyces variabilis (n = 22, 9.2%) and Rhizopus homothallicus (n = 6, 2.5%). On multivariate analysis, the mortality was significantly associated with gastrointestinal (OR: 18.70, P = .005) and pulmonary infections (OR: 3.03, P = .015). While comparing the two regions, majority (82.7%) cases were recorded from north India; uncontrolled diabetes (n = 157, P = .0001) and post-tubercular mucormycosis (n = 21, P = .006) were significantly associated with north Indian cases. No significant difference was noted among the species of Mucorales identified and treatment strategies between the two regions. The mortality rate was significantly higher in north Indian patients (50.5%) compared to 32.1% in south India (P = .016). The study highlights higher number of mucormycosis cases in uncontrolled diabetics of north India and emergence of R. microsporus and R. homothallicus across India causing the disease.


Assuntos
Gerenciamento Clínico , Mucormicose/diagnóstico , Mucormicose/epidemiologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Criança , Pré-Escolar , Complicações do Diabetes , Feminino , Humanos , Índia/epidemiologia , Lactente , Masculino , Pessoa de Meia-Idade , Técnicas de Diagnóstico Molecular , Mucorales/classificação , Mucorales/genética , Mucorales/isolamento & purificação , Mucormicose/mortalidade , Mucormicose/terapia , Estudos Prospectivos , Fatores de Risco , Análise de Sobrevida , Centros de Atenção Terciária , Resultado do Tratamento , Ferimentos e Lesões/complicações , Adulto Jovem
19.
Mycoses ; 62(2): 165-170, 2019 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30338581

RESUMO

BACKGROUND: Invasive mucormycosis is a rare but frequently fatal fungal disease. The acute and rapidly progressive evolution causes unfavourable outcome in 22%-59% of patients and its treatment represents a clinical challenge, especially in immunocompromised patients. Current data in paediatric oncological patients are limited. OBJECTIVES: The infection Working Group of the Italian Association of Pediatric Hematology and Oncology (AIEOP) analysed the episodes of invasive mucormycosis occurred between 2009 and 2016. PATIENTS: Fifteen cases of proven mucormycosis (male/female 8/7; median age 14.1 years, range 7.7-18.6) were reported after chemotherapy for acute leukaemia and lymphoma (12) and allogeneic stem cell transplantation (3). The aetiology was Rhizopus oryzae 4, Lichtheimia corymbifera 3 and Mucor spp. 8. RESULTS: Paranasal sinus was the primary site of infection in 14/15 patients combined with orbital involvement (9), central nervous system (8), lung (4), thyroid gland and kidney (1). All patients received liposomal Amphotericin B (L-AmB) (3-10 mg/kg), with surgical debridement in 14/15 cases. Eleven patients received maintenance treatment with posaconazole (9) or isavuconazole (2). Eight out of fifteen patients (53.3%) died, after 3-6 months. CONCLUSIONS: Mucormycosis involved mainly the sinu-orbital site and affected children >10 years. Despite aggressive treatment with high-dose L-AmB and timely surgical debridement, the mortality rate remains still high.


Assuntos
Neoplasias Hematológicas/complicações , Infecções Fúngicas Invasivas/epidemiologia , Infecções Fúngicas Invasivas/patologia , Mucorales/isolamento & purificação , Mucormicose/epidemiologia , Mucormicose/patologia , Adolescente , Antifúngicos/uso terapêutico , Criança , Pré-Escolar , Feminino , Humanos , Lactente , Recém-Nascido , Infecções Fúngicas Invasivas/tratamento farmacológico , Infecções Fúngicas Invasivas/microbiologia , Itália/epidemiologia , Masculino , Mucorales/classificação , Mucormicose/tratamento farmacológico , Mucormicose/microbiologia , Estudos Retrospectivos , Análise de Sobrevida
20.
Med Mycol ; 57(6): 739-744, 2019 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-30428080

RESUMO

Mucormycoses are life-threatening fungal diseases that affect a variety of patients including those with diabetes mellitus or hematological malignancies. The responsible agents, the Mucorales, are opportunistic pathogens originating from the environment such as soil or decaying organic matter. The aim of the present study was to assess the prevalence and diversity of human-pathogenic species of Mucorales in commercially available foodstuffs in France. All food samples were purchased from January 2014 to May 2015 in France. A total of 159 dried food samples including spices and herbs (n = 68), herbal tea (n = 19), cereals (n = 19), vegetables (n = 14), and other foodstuffs (n = 39) were analyzed. Each strain of Mucorales was identified phenotypically, and molecular identification was performed by ITS sequencing. From the 28 (17.6%) samples that were culture-positive for Mucorales, 30 isolates were recovered. Among the isolates, 13 were identified as Rhizopus arrhizus var. arrhizus, 10 R. arrhizus var. delemar, two Rhizopus microsporus, one Lichtheimia corymbifera, three Lichtheimia ramosa, and one Syncephalastrum racemosum. Culture-positive samples originated from different countries (Europe, Asia) and brands. The samples most frequently contaminated by Mucorales were spices and herbs (19/68, 27.9%), followed by herbal tea (2/19, 10.5%), cereals (2/19, 10.5%), other food products (5/39, 12.8%). The present study showed that human-pathogenic Mucorales were frequently recovered from commercially available foodstuffs in France with a large diversity of species. The potential danger represented by Mucorales present in food for immunocompromised patients should be further analyzed.


Assuntos
Contaminação de Alimentos/análise , Microbiologia de Alimentos , Variação Genética , Mucorales/classificação , Mucorales/isolamento & purificação , Ásia , DNA Espaçador Ribossômico/genética , Grão Comestível/microbiologia , Europa (Continente) , Paris , Plantas Medicinais/microbiologia , Especiarias/microbiologia , Verduras/microbiologia
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