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1.
Arch Microbiol ; 206(6): 281, 2024 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-38805057

RESUMO

As a legume crop widely cultured in the world, faba bean (Vicia faba L.) forms root nodules with diverse Rhizobium species in different regions. However, the symbionts associated with this plant in Mexico have not been studied. To investigate the diversity and species/symbiovar affiliations of rhizobia associated with faba bean in Mexico, rhizobia were isolated from this plant grown in two Mexican sites in the present study. Based upon the analysis of recA gene phylogeny, two genotypes were distinguished among a total of 35 isolates, and they were identified as Rhizobium hidalgonense and Rhizobium redzepovicii, respectively, by the whole genomic sequence analysis. Both the species harbored identical nod gene cluster and the same phylogenetic positions of nodC and nifH. So, all of them were identified into the symbiovar viciae. As a minor group, R. hidalgonense was only isolated from slightly acid soil and R. redzepovicii was the dominant group in both the acid and neutral soils. In addition, several genes related to resistance to metals (zinc, copper etc.) and metalloids (arsenic) were detected in genomes of the reference isolates, which might offer them some adaptation benefits. As conclusion, the community composition of faba bean rhizobia in Mexico was different from those reported in other regions. Furthermore, our study identified sv. viciae as the second symbiovar in the species R. redzepovicii. These results added novel evidence about the co-evolution, diversification and biogeographic patterns of rhizobia in association with their host legumes in distinct geographic regions.


Assuntos
Filogenia , Rhizobium , Microbiologia do Solo , Simbiose , Vicia faba , Vicia faba/microbiologia , Rhizobium/genética , Rhizobium/isolamento & purificação , Rhizobium/classificação , México , Proteínas de Bactérias/genética , Nódulos Radiculares de Plantas/microbiologia , Solo/química , N-Acetilglucosaminiltransferases/genética , Oxirredutases/genética , Recombinases Rec A/genética , Família Multigênica
2.
Physiol Plant ; 176(3): e14341, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38741264

RESUMO

Symbiotic nitrogen fixation (SNF) is crucial for legumes, providing them with the nitrogen necessary for plant growth and development. Nodulation is the first step in the establishment of SNF. However, the determinant genes in soybean nodulation and the understanding of the underlying molecular mechanisms governing nodulation are still limited. Herein, we identified a phosphatase, GmPP2C61A, which was specifically induced by rhizobia inoculation. Using transgenic hairy roots harboring GmPP2C61A::GUS, we showed that GmPP2C61A was mainly induced in epidermal cells following rhizobia inoculation. Functional analysis revealed that knockdown or knock-out of GmPP2C61A significantly reduced the number of nodules, while overexpression of GmPP2C61A promoted nodule formation. Additionally, GmPP2C61A protein was mainly localized in the cytoplasm and exhibited conserved phosphatase activity in vitro. Our findings suggest that phosphatase GmPP2C61A serves as a critical regulator in soybean nodulation, highlighting its potential significance in enhancing symbiotic nitrogen fixation.


Assuntos
Regulação da Expressão Gênica de Plantas , Glycine max , Fixação de Nitrogênio , Proteínas de Plantas , Nodulação , Simbiose , Glycine max/genética , Glycine max/microbiologia , Glycine max/fisiologia , Nodulação/genética , Proteínas de Plantas/metabolismo , Proteínas de Plantas/genética , Simbiose/genética , Rhizobium/fisiologia , Nódulos Radiculares de Plantas/genética , Nódulos Radiculares de Plantas/microbiologia , Nódulos Radiculares de Plantas/metabolismo , Plantas Geneticamente Modificadas , Monoéster Fosfórico Hidrolases/metabolismo , Monoéster Fosfórico Hidrolases/genética , Raízes de Plantas/genética , Raízes de Plantas/microbiologia , Raízes de Plantas/metabolismo
3.
Artigo em Inglês | MEDLINE | ID: mdl-38743471

RESUMO

Rhizobia are bacteria that form nitrogen-fixing nodules in legume plants. The sets of genes responsible for both nodulation and nitrogen fixation are carried in plasmids or genomic islands that are often mobile. Different strains within a species sometimes have different host specificities, while very similar symbiosis genes may be found in strains of different species. These specificity variants are known as symbiovars, and many of them have been given names, but there are no established guidelines for defining or naming them. Here, we discuss the requirements for guidelines to describe symbiovars, propose a set of guidelines, provide a list of all symbiovars for which descriptions have been published so far, and offer a mechanism to maintain a list in the future.


Assuntos
Rhizobium , Simbiose , Rhizobium/genética , Rhizobium/classificação , Fabaceae/microbiologia , Fixação de Nitrogênio , Nódulos Radiculares de Plantas/microbiologia , Guias como Assunto
4.
Microbiol Res ; 284: 127737, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38705080

RESUMO

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH or Gap) is a ubiquitous enzyme essential for carbon and energy metabolism in most organisms. Despite its primary role in sugar metabolism, GAPDH is recognized for its involvement in diverse cellular processes, being considered a paradigm among multifunctional/moonlighting proteins. Besides its canonical cytoplasmic location, GAPDH has been detected on cell surfaces or as a secreted protein in prokaryotes, yet little is known about its possible roles in plant symbiotic bacteria. Here we report that Rhizobium etli, a nitrogen-fixing symbiont of common beans, carries a single gap gene responsible for both GAPDH glycolytic and gluconeogenic activities. An active Gap protein is required throughout all stages of the symbiosis between R. etli and its host plant Phaseolus vulgaris. Both glycolytic and gluconeogenic Gap metabolic activities likely contribute to bacterial fitness during early and intermediate stages of the interaction, whereas GAPDH gluconeogenic activity seems critical for nodule invasion and nitrogen fixation. Although the R. etli Gap protein is secreted in a c-di-GMP related manner, no involvement of the R. etli gap gene in c-di-GMP related phenotypes, such as flocculation, biofilm formation or EPS production, was observed. Notably, the R. etli gap gene fully complemented a double gap1/gap2 mutant of Pseudomonas syringae for free life growth, albeit only partially in planta, suggesting potential specific roles for each type of Gap protein. Nevertheless, further research is required to unravel additional functions of the R. etli Gap protein beyond its essential metabolic roles.


Assuntos
Phaseolus , Rhizobium etli , Simbiose , Phaseolus/microbiologia , Rhizobium etli/genética , Rhizobium etli/metabolismo , Rhizobium etli/fisiologia , Rhizobium etli/crescimento & desenvolvimento , Fixação de Nitrogênio , Gluconeogênese/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Glicólise , Nódulos Radiculares de Plantas/microbiologia , Gliceraldeído-3-Fosfato Desidrogenases/genética , Gliceraldeído-3-Fosfato Desidrogenases/metabolismo
5.
Nat Plants ; 10(5): 736-742, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38724696

RESUMO

Symbiotic nitrogen fixation in legume nodules requires substantial energy investment from host plants, and soybean (Glycine max (L.) supernodulation mutants show stunting and yield penalties due to overconsumption of carbon sources. We obtained soybean mutants differing in their nodulation ability, among which rhizobially induced cle1a/2a (ric1a/2a) has a moderate increase in nodule number, balanced carbon allocation, and enhanced carbon and nitrogen acquisition. In multi-year and multi-site field trials in China, two ric1a/2a lines had improved grain yield, protein content and sustained oil content, demonstrating that gene editing towards optimal nodulation improves soybean yield and quality.


Assuntos
Glycine max , Nodulação , Glycine max/genética , Glycine max/metabolismo , Glycine max/microbiologia , Nodulação/genética , Nódulos Radiculares de Plantas/metabolismo , Nódulos Radiculares de Plantas/genética , Nódulos Radiculares de Plantas/microbiologia , Simbiose , Fixação de Nitrogênio/genética , Edição de Genes , Mutação , Proteínas de Plantas/metabolismo , Proteínas de Plantas/genética , Proteínas de Soja/genética , Proteínas de Soja/metabolismo
6.
Nat Commun ; 15(1): 4262, 2024 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-38802387

RESUMO

Root nodule symbiosis (RNS) is a complex trait that enables plants to access atmospheric nitrogen converted into usable forms through a mutualistic relationship with soil bacteria. Pinpointing the evolutionary origins of RNS is critical for understanding its genetic basis, but building this evolutionary context is complicated by data limitations and the intermittent presence of RNS in a single clade of ca. 30,000 species of flowering plants, i.e., the nitrogen-fixing clade (NFC). We developed the most extensive de novo phylogeny for the NFC and an RNS trait database to reconstruct the evolution of RNS. Our analysis identifies evolutionary rate heterogeneity associated with a two-step process: An ancestral precursor state transitioned to a more labile state from which RNS was rapidly gained at multiple points in the NFC. We illustrate how a two-step process could explain multiple independent gains and losses of RNS, contrary to recent hypotheses suggesting one gain and numerous losses, and suggest a broader phylogenetic and genetic scope may be required for genome-phenome mapping.


Assuntos
Fixação de Nitrogênio , Filogenia , Nódulos Radiculares de Plantas , Simbiose , Simbiose/genética , Fixação de Nitrogênio/genética , Nódulos Radiculares de Plantas/microbiologia , Nódulos Radiculares de Plantas/genética , Evolução Molecular , Evolução Biológica , Raízes de Plantas/microbiologia , Raízes de Plantas/genética , Magnoliopsida/genética , Magnoliopsida/microbiologia
7.
Antonie Van Leeuwenhoek ; 117(1): 69, 2024 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-38647727

RESUMO

A novel bacterial symbiont, strain A19T, was previously isolated from a root-nodule of Aeschynomene indica and assigned to a new lineage in the photosynthetic clade of the genus Bradyrhizobium. Here data are presented for the detailed genomic and taxonomic analyses of novel strain A19T. Emphasis is placed on the analysis of genes of practical or ecological significance (photosynthesis, nitrous oxide reductase and nitrogen fixation genes). Phylogenomic analysis of whole genome sequences as well as 50 single-copy core gene sequences placed A19T in a highly supported lineage distinct from described Bradyrhizobium species with B. oligotrophicum as the closest relative. The digital DNA-DNA hybridization and average nucleotide identity values for A19T in pair-wise comparisons with close relatives were far lower than the respective threshold values of 70% and ~ 96% for definition of species boundaries. The complete genome of A19T consists of a single 8.44 Mbp chromosome and contains a photosynthesis gene cluster, nitrogen-fixation genes and genes encoding a complete denitrifying enzyme system including nitrous oxide reductase implicated in the reduction of N2O, a potent greenhouse gas, to inert dinitrogen. Nodulation and type III secretion system genes, needed for nodulation by most rhizobia, were not detected. Data for multiple phenotypic tests complemented the sequence-based analyses. Strain A19T elicits nitrogen-fixing nodules on stems and roots of A. indica plants but not on soybeans or Macroptilium atropurpureum. Based on the data presented, a new species named Bradyrhizobium ontarionense sp. nov. is proposed with strain A19T (= LMG 32638T = HAMBI 3761T) as the type strain.


Assuntos
Bradyrhizobium , Genoma Bacteriano , Fixação de Nitrogênio , Oxirredutases , Fotossíntese , Filogenia , Simbiose , Bradyrhizobium/genética , Bradyrhizobium/classificação , Bradyrhizobium/metabolismo , Bradyrhizobium/isolamento & purificação , Oxirredutases/genética , Oxirredutases/metabolismo , DNA Bacteriano/genética , RNA Ribossômico 16S/genética , Nódulos Radiculares de Plantas/microbiologia
9.
Nat Commun ; 15(1): 2924, 2024 Apr 04.
Artigo em Inglês | MEDLINE | ID: mdl-38575565

RESUMO

Biological nitrogen fixation by free-living bacteria and rhizobial symbiosis with legumes plays a key role in sustainable crop production. Here, we study how different crop combinations influence the interaction between peanut plants and their rhizosphere microbiota via metabolite deposition and functional responses of free-living and symbiotic nitrogen-fixing bacteria. Based on a long-term (8 year) diversified cropping field experiment, we find that peanut co-cultured with maize and oilseed rape lead to specific changes in peanut rhizosphere metabolite profiles and bacterial functions and nodulation. Flavonoids and coumarins accumulate due to the activation of phenylpropanoid biosynthesis pathways in peanuts. These changes enhance the growth and nitrogen fixation activity of free-living bacterial isolates, and root nodulation by symbiotic Bradyrhizobium isolates. Peanut plant root metabolites interact with Bradyrhizobium isolates contributing to initiate nodulation. Our findings demonstrate that tailored intercropping could be used to improve soil nitrogen availability through changes in the rhizosphere microbiome and its functions.


Assuntos
Fabaceae , Fixação de Nitrogênio , Fabaceae/microbiologia , Nodulação , Solo , Microbiologia do Solo , Simbiose , Arachis , Verduras , Nitrogênio , Nódulos Radiculares de Plantas/microbiologia
10.
Syst Appl Microbiol ; 47(2-3): 126504, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38593622

RESUMO

South Africa is well-known for the diversity of its legumes and their nitrogen-fixing bacterial symbionts. However, in contrast to their plant partners, remarkably few of these microbes (collectively referred to as rhizobia) from South Africa have been characterised and formally described. This is because the rules of the International Code of Nomenclature of Prokaryotes (ICNP) are at odds with South Africa's National Environmental Management: Biodiversity Act and its associated regulations. The ICNP requires that a culture of the proposed type strain for a novel bacterial species be deposited in two international culture collections and be made available upon request without restrictions, which is not possible under South Africa's current national regulations. Here, we describe seven new Mesorhizobium species obtained from root nodules of Vachellia karroo, an iconic tree legume distributed across various biomes in southern Africa. For this purpose, 18 rhizobial isolates were delineated into putative species using genealogical concordance, after which their plausibility was explored with phenotypic characters and average genome relatedness. For naming these new species, we employed the rules of the recently published Code of Nomenclature of Prokaryotes described from Sequence Data (SeqCode), which utilizes genome sequences as nomenclatural types. The work presented in this study thus provides an illustrative example of how the SeqCode allows for a standardised approach for naming cultivated organisms for which the deposition of a type strain in international culture collections is currently problematic.


Assuntos
Fabaceae , Mesorhizobium , Filogenia , Nódulos Radiculares de Plantas , África do Sul , Nódulos Radiculares de Plantas/microbiologia , Mesorhizobium/classificação , Mesorhizobium/genética , Mesorhizobium/fisiologia , Mesorhizobium/isolamento & purificação , Fabaceae/microbiologia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Terminologia como Assunto , Genoma Bacteriano/genética , DNA Bacteriano/genética , Simbiose , Rhizobium/classificação , Rhizobium/genética , Rhizobium/fisiologia
11.
Appl Environ Microbiol ; 90(5): e0028824, 2024 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-38651928

RESUMO

In many frankia, the ability to nodulate host plants (Nod+) and fix nitrogen (Fix+) is a common strategy. However, some frankia within the Pseudofrankia genus lack one or two of these traits. This phenomenon has been consistently observed across various actinorhizal nodule isolates, displaying Nod- and/or Fix- phenotypes. Yet, the mechanisms supporting the colonization and persistence of these inefficient frankia within nodules, both with and without symbiotic strains (Nod+/Fix+), remain unclear. It is also uncertain whether these associations burden or benefit host plants. This study delves into the ecological interactions between Parafrankia EUN1f and Pseudofrankia inefficax EuI1c, isolated from Elaeagnus umbellata nodules. EUN1f (Nod+/Fix+) and EuI1c (Nod+/Fix-) display contrasting symbiotic traits. While the prediction suggests a competitive scenario, the absence of direct interaction evidence implies that the competitive advantage of EUN1f and EuI1c is likely contingent on contextual factors such as substrate availability and the specific nature of stressors in their respective habitats. In co-culture, EUN1f outperforms EuI1c, especially under specific conditions, driven by its nitrogenase activity. Iron-depleted conditions favor EUN1f, emphasizing iron's role in microbial competition. Both strains benefit from host root exudates in pure culture, but EUN1f dominates in co-culture, enhancing its competitive traits. Nodulation experiments show that host plant preferences align with inoculum strain abundance under nitrogen-depleted conditions, while consistently favoring EUN1f in nitrogen-supplied media. This study unveils competitive dynamics and niche exclusion between EUN1f and EuI1c, suggesting that host plant may penalize less effective strains and even all strains. These findings highlight the complex interplay between strain competition and host selective pressure, warranting further research into the underlying mechanisms shaping plant-microbe-microbe interactions in diverse ecosystems. IMPORTANCE: While Pseudofrankia strains typically lack the common traits of ability to nodulate the host plant (Nod-) and/or fix nitrogen (Fix-), they are still recovered from actinorhizal nodules. The enigmatic question of how and why these unconventional strains establish themselves within nodule tissue, thriving either alongside symbiotic strains (Nod+/Fix+) or independently, while considering potential metabolic costs to the host plant, remains a perplexing puzzle. This study endeavors to unravel the competitive dynamics between Pseudofrankia inefficax strain EuI1c (Nod+/Fix-) and Parafrankia strain EU1Nf (Nod+/Fix+) through a comprehensive exploration of genomic data and empirical modeling, conducted both in controlled laboratory settings and within the host plant environment.


Assuntos
Elaeagnaceae , Frankia , Fixação de Nitrogênio , Nódulos Radiculares de Plantas , Simbiose , Frankia/genética , Frankia/fisiologia , Frankia/metabolismo , Elaeagnaceae/microbiologia , Nódulos Radiculares de Plantas/microbiologia , Técnicas de Cocultura , Genoma Bacteriano
12.
mBio ; 15(4): e0247823, 2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38445860

RESUMO

The symbioses between leguminous plants and nitrogen-fixing bacteria known as rhizobia are well known for promoting plant growth and sustainably increasing soil nitrogen. Recent evidence indicates that hopanoids, a family of steroid-like lipids, promote Bradyrhizobium symbioses with tropical legumes. To characterize hopanoids in Bradyrhizobium symbiosis with soybean, we validated a recently published cumate-inducible hopanoid mutant of Bradyrhizobium diazoefficiens USDA110, Pcu-shc::∆shc. GC-MS analysis showed that this strain does not produce hopanoids without cumate induction, and under this condition, is impaired in growth in rich medium and under osmotic, temperature, and pH stress. In planta, Pcu-shc::∆shc is an inefficient soybean symbiont with significantly lower rates of nitrogen fixation and low survival within the host tissue. RNA-seq revealed that hopanoid loss reduces the expression of flagellar motility and chemotaxis-related genes, further confirmed by swim plate assays, and enhances the expression of genes related to nitrogen metabolism and protein secretion. These results suggest that hopanoids provide a significant fitness advantage to B. diazoefficiens in legume hosts and provide a foundation for future mechanistic studies of hopanoid function in protein secretion and motility.A major problem for global sustainability is feeding our exponentially growing human population while available arable land decreases. Harnessing the power of plant-beneficial microbes is a potential solution, including increasing our reliance on the symbioses of leguminous plants and nitrogen-fixing rhizobia. This study examines the role of hopanoid lipids in the symbiosis between Bradyrhizobium diazoefficiens USDA110, an important commercial inoculant strain, and its economically significant host soybean. Our research extends our knowledge of the functions of bacterial lipids in symbiosis to an agricultural context, which may one day help improve the practical applications of plant-beneficial microbes in agriculture.


Assuntos
Bradyrhizobium , Fabaceae , Rhizobium , Humanos , Glycine max , Bradyrhizobium/genética , Bradyrhizobium/metabolismo , Simbiose , Nódulos Radiculares de Plantas/microbiologia , Fabaceae/microbiologia , Fixação de Nitrogênio , Verduras , Rhizobium/genética , Rhizobium/metabolismo , Nitrogênio/metabolismo , Lipídeos
13.
Arch Microbiol ; 206(4): 147, 2024 Mar 11.
Artigo em Inglês | MEDLINE | ID: mdl-38462552

RESUMO

Legumes can establish a mutual association with soil-derived nitrogen-fixing bacteria called 'rhizobia' forming lateral root organs called root nodules. Rhizobia inside the root nodules get transformed into 'bacteroids' that can fix atmospheric nitrogen to ammonia for host plants in return for nutrients and shelter. A substantial 200 million tons of nitrogen is fixed annually through biological nitrogen fixation. Consequently, the symbiotic mechanism of nitrogen fixation is utilized worldwide for sustainable agriculture and plays a crucial role in the Earth's ecosystem. The development of effective nitrogen-fixing symbiosis between legumes and rhizobia is very specialized and requires coordinated signaling. A plethora of plant-derived nodule-specific cysteine-rich (NCR or NCR-like) peptides get actively involved in this complex and tightly regulated signaling process of symbiosis between some legumes of the IRLC (Inverted Repeat-Lacking Clade) and Dalbergioid clades and nitrogen-fixing rhizobia. Recent progress has been made in identifying two such peptidases that actively prevent bacterial differentiation, leading to symbiotic incompatibility. In this review, we outlined the functions of NCRs and two nitrogen-fixing blocking peptidases: HrrP (host range restriction peptidase) and SapA (symbiosis-associated peptidase A). SapA was identified through an overexpression screen from the Sinorhizobium meliloti 1021 core genome, whereas HrrP is inherited extra-chromosomally. Interestingly, both peptidases affect the symbiotic outcome by degrading the NCR peptides generated from the host plants. These NCR-degrading peptidases can shed light on symbiotic incompatibility, helping to elucidate the reasons behind the inefficiency of nitrogen fixation observed in certain groups of rhizobia with specific legumes.


Assuntos
Medicago truncatula , Rhizobium , Peptídeo Hidrolases/genética , Rhizobium/genética , Rhizobium/metabolismo , Simbiose , Medicago truncatula/genética , Medicago truncatula/metabolismo , Medicago truncatula/microbiologia , Ecossistema , Peptídeos/metabolismo , Verduras , Nitrogênio , Fixação de Nitrogênio , Nódulos Radiculares de Plantas/microbiologia
14.
FEMS Microbiol Ecol ; 100(5)2024 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-38520167

RESUMO

Coriariaceae are a small plant family of 14-17 species and subspecies that currently have a global but disjunct distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which form the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no complete genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the Coriariaceae species occur here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.


Assuntos
Frankia , Filogenia , Simbiose , Frankia/genética , Frankia/classificação , Genoma Bacteriano , Nova Zelândia , Argentina , Filogeografia , Nódulos Radiculares de Plantas/microbiologia , Análise de Sequência de DNA , DNA Bacteriano/genética
15.
Braz J Biol ; 84: e277549, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38511775

RESUMO

In the conducted studies, the moorphological and physiological properties of nodule bacteria of lupine were studied. Lupine plants were grown under the conditions of a microfield experiment on a typical medium loamy urban soil. In the study, a pure culture of Bradyrhizobium lupini was isolated. Then, the morphological properties of nodule bacteria cells and the chemical composition of cell membranes of nodule bacteria were determined. The acid resistance and physiological properties of lupine nodule bacteria were also determined, as well as the ratio of Bradyrhizobium lupini to antibiotics. All studies were carried out according to generally accepted methods. The results of the research showed that during the cultivation of lupine on a typical urban soil, nodule bacteria Bradyrhizobium lupini were isolated, which can be characterized as gram-negative, non-spore-forming rods that do not exhibit amylolytic activity. It was revealed that the rhizobia of nodule bacteria are not acid-resistant. Nodule bacteria turned out to be the least resistant to polymyxin, then to levomycetin, and Bradyrhizobium lupini showed the greatest resistance to tetracycline.


Assuntos
Bradyrhizobium , Lupinus , Rhizobiaceae , Lupinus/microbiologia , Nódulos Radiculares de Plantas/microbiologia , Solo , Bradyrhizobium/fisiologia , Simbiose/fisiologia , Microbiologia do Solo
16.
New Phytol ; 242(1): 77-92, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38339826

RESUMO

Plant-microbe mutualisms, such as the legume-rhizobium symbiosis, are influenced by the geographical distributions of both partners. However, limitations on the native range of legumes, resulting from the absence of a compatible mutualist, have rarely been explored. We used a combination of a large-scale field survey and controlled experiments to determine the realized niche of Calicotome villosa, an abundant and widespread legume shrub. Soil type was a major factor affecting the distribution and abundance of C. villosa. In addition, we found a large region within its range in which neither C. villosa nor Bradyrhizobium, the bacterial genus that associates with it, were present. Seedlings grown in soil from this region failed to nodulate and were deficient in nitrogen. Inoculation of this soil with Bradyrhizobium isolated from root nodules of C. villosa resulted in the formation of nodules and higher growth rate, leaf N and shoot biomass compared with un-inoculated plants. We present evidence for the exclusion of a legume from parts of its native range by the absence of a compatible mutualist. This result highlights the importance of the co-distribution of both the host plant and its mutualist when attempting to understand present and future geographical distributions of legumes.


Assuntos
Bradyrhizobium , Fabaceae , Rhizobium , Fabaceae/microbiologia , Nódulos Radiculares de Plantas/microbiologia , Fixação de Nitrogênio , Simbiose , Nitrogênio , Solo
17.
New Phytol ; 242(2): 626-640, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38396236

RESUMO

Gibberellins (GA) have a profound influence on the formation of lateral root organs. However, the precise role this hormone plays in the cell-specific events during lateral root formation, rhizobial infection and nodule organogenesis, including interactions with auxin and cytokinin (CK), is not clear. We performed epidermal- and endodermal-specific complementation of the severely GA-deficient na pea (Pisum sativum) mutant with Agrobacterium rhizogenes. Gibberellin mutants were used to examine the spatial expression pattern of CK (TCSn)- and auxin (DR5)-responsive promoters and hormone levels. We found that GA produced in the endodermis promote lateral root and nodule organogenesis and can induce a mobile signal(s) that suppresses rhizobial infection. By contrast, epidermal-derived GA suppress infection but have little influence on root or nodule development. GA suppress the CK-responsive TCSn promoter in the cortex and are required for normal auxin activation during nodule primordia formation. Our findings indicate that GA regulate the checkpoints between infection thread (IT) penetration of the cortex and invasion of nodule primordial cells and promote the subsequent progression of nodule development. It appears that GA limit the progression and branching of IT in the cortex by restricting CK response and activate auxin response to promote nodule primordia development.


Assuntos
Giberelinas , Nodulação , Nodulação/fisiologia , Citocininas , Ácidos Indolacéticos/farmacologia , Pisum sativum/genética , Hormônios , Regulação da Expressão Gênica de Plantas , Nódulos Radiculares de Plantas/microbiologia , Simbiose , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
18.
Plant J ; 118(4): 1136-1154, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38341846

RESUMO

Rhizobial phosphatidylcholine (PC) is thought to be a critical phospholipid for the symbiotic relationship between rhizobia and legume host plants. A PC-deficient mutant of Sinorhizobium meliloti overproduces succinoglycan, is unable to swim, and lacks the ability to form nodules on alfalfa (Medicago sativa) host roots. Suppressor mutants had been obtained which did not overproduce succinoglycan and regained the ability to swim. Previously, we showed that point mutations leading to altered ExoS proteins can reverse the succinoglycan and swimming phenotypes of a PC-deficient mutant. Here, we report that other point mutations leading to altered ExoS, ChvI, FabA, or RpoH1 proteins also revert the succinoglycan and swimming phenotypes of PC-deficient mutants. Notably, the suppressor mutants also restore the ability to form nodule organs on alfalfa roots. However, nodules generated by these suppressor mutants express only low levels of an early nodulin, do not induce leghemoglobin transcript accumulation, thus remain white, and are unable to fix nitrogen. Among these suppressor mutants, we detected a reduced function mutant of the 3-hydoxydecanoyl-acyl carrier protein dehydratase FabA that produces reduced amounts of unsaturated and increased amounts of shorter chain fatty acids. This alteration of fatty acid composition probably affects lipid packing thereby partially compensating for the previous loss of PC and contributing to the restoration of membrane homeostasis.


Assuntos
Ácidos Graxos , Medicago sativa , Fosfatidilcolinas , Nodulação , Sinorhizobium meliloti , Simbiose , Sinorhizobium meliloti/fisiologia , Sinorhizobium meliloti/genética , Medicago sativa/microbiologia , Medicago sativa/genética , Nodulação/genética , Ácidos Graxos/metabolismo , Ácidos Graxos/biossíntese , Fosfatidilcolinas/metabolismo , Fosfatidilcolinas/biossíntese , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Nódulos Radiculares de Plantas/microbiologia , Nódulos Radiculares de Plantas/genética , Nódulos Radiculares de Plantas/metabolismo , Mutação , Polissacarídeos Bacterianos/metabolismo , Polissacarídeos Bacterianos/biossíntese , Fixação de Nitrogênio
19.
Curr Biol ; 34(4): 825-840.e7, 2024 02 26.
Artigo em Inglês | MEDLINE | ID: mdl-38301650

RESUMO

Legumes produce specialized root nodules that are distinct from lateral roots in morphology and function, with nodules intracellularly hosting nitrogen-fixing bacteria. We have previously shown that a lateral root program underpins nodule initiation, but there must be additional developmental regulators that confer nodule identity. Here, we show two members of the LIGHT-SENSITIVE SHORT HYPOCOTYL (LSH) transcription factor family, predominantly known to define shoot meristem complexity and organ boundaries, function as regulators of nodule organ identity. In parallel to the root initiation program, LSH1/LSH2 recruit a program into the root cortex that mediates the divergence into nodules, in particular with cell divisions in the mid-cortex. This includes regulation of auxin and cytokinin, promotion of NODULE ROOT1/2 and Nuclear Factor YA1, and suppression of the lateral root program. A principal outcome of LSH1/LSH2 function is the production of cells able to accommodate nitrogen-fixing bacteria, a key feature unique to nodules.


Assuntos
Medicago truncatula , Medicago truncatula/genética , Nódulos Radiculares de Plantas/genética , Nódulos Radiculares de Plantas/microbiologia , Hipocótilo/genética , Hipocótilo/metabolismo , Citocininas/genética , Meristema/metabolismo , Simbiose/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Regulação da Expressão Gênica de Plantas , Raízes de Plantas/metabolismo
20.
J Microbiol Biotechnol ; 34(3): 570-579, 2024 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-38213271

RESUMO

Root-nodule nitrogen-fixing bacteria are known for being specific to particular legumes. This study isolated the endophytic root-nodule bacteria from the nodules of legumes and examined them to determine whether they could be used to promote the formation of nodules in other legumes. Forty-six isolates were collected from five leguminous plants and screened for housekeeping (16S rRNA), nitrogen fixation (nifH), and nodulation (nodC) genes. Based on the 16S rRNA gene sequencing and phylogenetic analysis, the bacterial isolates WC15, WC16, WC24, and GM5 were identified as Rhizobium, Sphingomonas, Methylobacterium, and Bradyrhizobium, respectively. The four isolates were found to have the nifH gene, and the study confirmed that one isolate (GM5) had both the nifH and nodC genes. The Salkowski method was used to measure the isolated bacteria for their capacity to produce phytohormone indole acetic acid (IAA). Additional experiments were performed to examine the effect of the isolated bacteria on root morphology and nodulation. Among the four tested isolates, both WC24 and GM5 induced nodulation in Glycine max. The gene expression studies revealed that GM5 had a higher expression of the nifH gene. The existence and expression of the nitrogen-fixing genes implied that the tested strain had the ability to fix the atmospheric nitrogen. These findings demonstrated that a nitrogen-fixing bacterium, Methylobacterium (WC24), isolated from a Trifolium repens, induced the formation of root nodules in non-host leguminous plants (Glycine max). This suggested the potential application of these rhizobia as biofertilizer. Further studies are required to verify the N2-fixing efficiency of the isolates.


Assuntos
Fabaceae , Bactérias Fixadoras de Nitrogênio , Rhizobium , Fabaceae/microbiologia , Nódulos Radiculares de Plantas/metabolismo , Nódulos Radiculares de Plantas/microbiologia , Bactérias Fixadoras de Nitrogênio/genética , Bactérias Fixadoras de Nitrogênio/metabolismo , Leguminas , Filogenia , RNA Ribossômico 16S/genética , Simbiose/genética , Fixação de Nitrogênio , Glycine max , Bactérias/genética , Rhizobium/genética , Rhizobium/metabolismo , Verduras , Nitrogênio/metabolismo
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