Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 147
Filtrar
Mais filtros








Base de dados
Intervalo de ano de publicação
1.
Biometals ; 35(5): 889-901, 2022 10.
Artigo em Inglês | MEDLINE | ID: mdl-35767097

RESUMO

The toxic nature of arsenic has left a trail of disastrous health consequences around the world. Microorganisms have developed various strategies to deal with arsenic. The presence of plasmid and chromosomal ars operons is one of the most important mechanisms for the detoxification of arsenic in bacteria. ArsR is a trans-acting regulatory protein and acts as a repressor on ars operon. The gene encoding ArsR from Corynebacterium glutamicum (CgArsR1) was cloned in expression vectors pET28a. The resulting constructs were transformed into Escherichia coli strains Rosetta (DE3) and Rosetta gami 2. Following the induction with Isopropyl ß-D-1-thiogalactopyranoside, the protein His-CgArsR1 was found in the soluble fraction of strain Rg-CgArsR1. For comparison, ArsR from E. coli was also overexpressed in E. coli (strain Rosetta gami 2) as His-EcArsR. A strain containing empty vector pET28a was also used as a control strain. In the medium containing either arsenite (0.5 mM) or arsenate (0.5 mM), the strain Rg-CgArsR1 and Rg-EcArsR were able to accumulate 1200 and 700 µg/g DCW As3+, respectively. In comparison, the accumulation of As5+ in these strains was 338 and 232 µg/g DCW, respectively. Whereas both strains Rg-CgArsR1 and Rg-EcArsR were able to accumulate higher amounts of As3+ and As5+ with respect to control strain, the accumulation of arsenic in the strain Rg-CgArsR1 was significantly more efficient than strain Rg-EcArsR for removing As3+ and As5+. Based on the results the gene encoding CgArsR1 is a useful and efficient target gene for the modification of bacteria for bioremediation of arsenic from polluted soil and water.


Assuntos
Arsênio , Arsenitos , Corynebacterium glutamicum , Arseniatos , Arsênio/química , Arsenitos/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Bioacumulação , Corynebacterium glutamicum/genética , Corynebacterium glutamicum/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica , Solo , Tiogalactosídeos/metabolismo , Água/metabolismo
2.
Glycobiology ; 31(10): 1390-1400, 2021 11 18.
Artigo em Inglês | MEDLINE | ID: mdl-34228782

RESUMO

Galectin-3 (Gal-3), a ß-galactoside-binding lectin, has been implicated in a plethora of pathological disorders including fibrosis, inflammation, cancer and metabolic diseases. TD139-a thio-digalactoside inhibitor developed by Galecto Biotech as a potential therapeutic for idiopathic pulmonary fibrosis-is the most advanced small-molecule Gal-3 inhibitor in clinical studies. It binds to human Gal-3 with high affinity but has lower affinity towards mouse and rat homologs, which is also manifested in the differential inhibition of Gal-3 function. Using biophysical methods and high-resolution X-ray co-crystal structures of TD139 and Gal-3 proteins, we demonstrate that a single amino acid change corresponding to A146 in human Gal-3 is sufficient for the observed reduction in the binding affinity of TD139 in rodents. Site-directed mutagenesis of A146V (in human Gal-3) and V160A (in mouse Gal-3) was sufficient to interchange the affinities, mainly by affecting the off rates of the inhibitor binding. In addition, molecular dynamics simulations of both wild-type and mutant structures revealed the sustained favorable noncovalent interactions between the fluorophenyl ring and the active site A146 (human Gal-3 and mouse V160A) that corroborate the finding from biophysical studies. Current findings have ramifications in the context of optimization of drug candidates against Gal-3.


Assuntos
Proteínas Sanguíneas , Galectinas , Tiogalactosídeos , Humanos , Sítios de Ligação/efeitos dos fármacos , Proteínas Sanguíneas/antagonistas & inibidores , Proteínas Sanguíneas/metabolismo , Galectinas/antagonistas & inibidores , Galectinas/metabolismo , Tiogalactosídeos/metabolismo , Tiogalactosídeos/farmacologia
3.
Chembiochem ; 22(3): 539-547, 2021 02 02.
Artigo em Inglês | MEDLINE | ID: mdl-32914927

RESUMO

Photolabile protecting groups play a significant role in controlling biological functions and cellular processes in living cells and tissues, as light offers high spatiotemporal control, is non-invasive as well as easily tuneable. In the recent past, photo-responsive inducer molecules such as 6-nitropiperonyl-caged IPTG (NP-cIPTG) have been used as optochemical tools for Lac repressor-controlled microbial expression systems. To further expand the applicability of the versatile optochemical on-switch, we have investigated whether the modulation of cIPTG water solubility can improve the light responsiveness of appropriate expression systems in bacteria. To this end, we developed two new cIPTG derivatives with different hydrophobicity and demonstrated both an easy applicability for the light-mediated control of gene expression and a simple transferability of this optochemical toolbox to the biotechnologically relevant bacteria Pseudomonas putida and Bacillus subtilis. Notably, the more water-soluble cIPTG derivative proved to be particularly suitable for light-mediated gene expression in these alternative expression hosts.


Assuntos
Bacillus subtilis/genética , Repressores Lac/metabolismo , Luz , Pseudomonas putida/genética , Tiogalactosídeos/metabolismo , Bacillus subtilis/metabolismo , Regulação Bacteriana da Expressão Gênica/genética , Repressores Lac/química , Processos Fotoquímicos , Pseudomonas putida/metabolismo , Solubilidade , Tiogalactosídeos/química
4.
ChemMedChem ; 14(16): 1528-1536, 2019 08 20.
Artigo em Inglês | MEDLINE | ID: mdl-31246331

RESUMO

Multipolar fluorine-amide interactions with backbone and side-chain amides have been described as important for protein-ligand interactions and have been used to improve the potency of synthetic inhibitors. In this study, fluorine interactions within a well-defined binding pocket on galectin-3 were investigated systematically using phenyltriazolyl-thiogalactosides fluorinated singly or multiply at various positions on the phenyl ring. X-ray structures of the C-terminal domain of galectin-3 in complex with eight of these ligands revealed potential orthogonal fluorine-amide interactions with backbone amides and one with a side-chain amide. The two interactions involving main-chain amides seem to have a strong influence on affinity as determined by fluorescence anisotropy. In contrast, the interaction with the side-chain amide did not influence affinity. Quantum mechanics calculations were used to analyze the relative contributions of these interactions to the binding energies. No clear correlation could be found between the relative energies of the fluorine-main-chain amide interactions and the overall binding energy. Instead, dispersion and desolvation effects play a larger role. The results confirm that the contribution of fluorine-amide interactions to protein-ligand interactions cannot simply be predicted, on geometrical considerations alone, but require careful consideration of the energetic components.


Assuntos
Galectina 3/metabolismo , Hidrocarbonetos Fluorados/metabolismo , Tiogalactosídeos/metabolismo , Triazóis/metabolismo , Sítios de Ligação , Proteínas Sanguíneas , Cristalografia por Raios X , Teoria da Densidade Funcional , Galectinas , Humanos , Ligantes , Modelos Químicos , Ligação Proteica , Termodinâmica
5.
Int J Mol Sci ; 19(1)2018 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-29320431

RESUMO

The incidence and mortality of cancer have increased over the past decades. Significant progress has been made in understanding the underpinnings of this disease and developing therapies. Despite this, cancer still remains a major therapeutic challenge. Current therapeutic research has targeted several aspects of the disease such as cancer development, growth, angiogenesis and metastases. Many molecular and cellular mechanisms remain unknown and current therapies have so far failed to meet their intended potential. Recent studies show that glycans, especially oligosaccharide chains, may play a role in carcinogenesis as recognition patterns for galectins. Galectins are members of the lectin family, which show high affinity for ß-galactosides. The galectin-glycan conjugate plays a fundamental role in metastasis, angiogenesis, tumor immunity, proliferation and apoptosis. Galectins' action is mediated by a structure containing at least one carbohydrate recognition domain (CRD). The potential prognostic value of galectins has been described in several neoplasms and helps clinicians predict disease outcome and determine therapeutic interventions. Currently, new therapeutic strategies involve the use of inhibitors such as competitive carbohydrates, small non-carbohydrate binding molecules and antibodies. This review outlines our current knowledge regarding the mechanism of action and potential therapy implications of galectins in cancer.


Assuntos
Galectinas/metabolismo , Neoplasias/tratamento farmacológico , Calixarenos/metabolismo , Calixarenos/uso terapêutico , Ensaios Clínicos como Assunto , Galactose/análogos & derivados , Galactose/metabolismo , Galactose/uso terapêutico , Galectinas/antagonistas & inibidores , Humanos , Mananas , Neoplasias/patologia , Pectinas/química , Pectinas/uso terapêutico , Peptídeos/metabolismo , Peptídeos/uso terapêutico , Polissacarídeos/metabolismo , Polissacarídeos/uso terapêutico , Tiogalactosídeos/química , Tiogalactosídeos/metabolismo , Tiogalactosídeos/uso terapêutico
6.
J Med Chem ; 61(3): 1164-1175, 2018 02 08.
Artigo em Inglês | MEDLINE | ID: mdl-29284090

RESUMO

Symmetrical and asymmetrical fluorinated phenyltriazolyl-thiodigalactoside derivatives have been synthesized and evaluated as inhibitors of galectin-1 and galectin-3. Systematic tuning of the phenyltriazolyl-thiodigalactosides' fluoro-interactions with galectin-3 led to the discovery of inhibitors with exceptional affinities (Kd down to 1-2 nM) in symmetrically substituted thiodigalactosides as well as unsurpassed combination of high affinity (Kd 7.5 nM) and selectivity (46-fold) over galectin-1 for asymmetrical thiodigalactosides by carrying one trifluorphenyltriazole and one coumaryl moiety. Studies of the inhibitor-galectin complexes with isothermal titration calorimetry and X-ray crystallography revealed the importance of fluoro-amide interaction for affinity and for selectivity. Finally, the high affinity of the discovered inhibitors required two competitive titration assay tools to be developed: a new high affinity fluorescent probe for competitive fluorescent polarization and a competitive ligand optimal for analyzing high affinity galectin-3 inhibitors with competitive isothermal titration calorimetry.


Assuntos
Galectina 3/metabolismo , Tiogalactosídeos/química , Tiogalactosídeos/metabolismo , Proteínas Sanguíneas , Descoberta de Drogas , Galectina 3/química , Galectinas , Humanos , Modelos Moleculares , Ligação Proteica , Conformação Proteica , Especificidade por Substrato , Termodinâmica , Tiogalactosídeos/síntese química
7.
BMC Biotechnol ; 15: 3, 2015 Feb 08.
Artigo em Inglês | MEDLINE | ID: mdl-25887674

RESUMO

BACKGROUND: CuZn-Superoxide dismutase (SOD) is a unique enzyme, which can catalyzes the dismutation of inevitable metabolic product i.e.; superoxide anion into molecular oxygen and hydrogen peroxide. The enzyme has gained wide interest in pharmaceutical industries due to its highly acclaimed antioxidative properties. The recombinant expression of this protein in its enzymatically active and stable form is highly desired and hence optimization of culture conditions and characterization of the related biochemical properties are essential to explore the significance of the enzyme in physiological, therapeutic, structural and transgenic research. RESULTS: High-level expression of the chloroplastic isoform of Pisum sativum CuZn-SOD was achieved at 18°C, upon isopropyl ß-D-1-thiogalactopyranoside induction and the process was optimized for maximum recovery of the protein in its soluble (enzymatically active) form. Both crude and purified protein fractions display significant increase in activity following supplementation of defined concentration Cu (CuSO4) and Zn (ZnSO4). Yield of the purified recombinant protein was ~ 4 mg L(-1) of culture volume and the bacterial biomass was ~ 4.5 g L(-1). The recombinant pea chloroplastic SOD was found to possess nearly 6 fold higher superoxide dismutase activity and the peroxidase activity was also 5 fold higher as compared to commercially available CuZn-superoxide dismutase. The computational, spectroscopic and biochemical characterization reveals that the protein harbors all the characteristics features of this class of enzyme. The enzyme was found to be exceptionally stable as evident from pH and temperature incubation studies and maintenance of SOD activity upon prolonged storage. CONCLUSIONS: Overexpression and purification strategy presented here describes an efficient protocol for the production of a highly active and stable CuZn-superoxide dismutase in its recombinant form in E. coli system. The strategy can be utilized for the large-scale preparation of active CuZn-superoxide dismutase and thus it has wide application in pharmaceutical industries and also for elucidating the potential of this protein endowed with exceptional stability and activity.


Assuntos
Cloroplastos/enzimologia , Pisum sativum/enzimologia , Superóxido Dismutase/química , Superóxido Dismutase/metabolismo , Cloroplastos/química , Cloroplastos/genética , Dicroísmo Circular , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Concentração de Íons de Hidrogênio , Modelos Moleculares , Pisum sativum/química , Pisum sativum/genética , Proteínas de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Superóxido Dismutase/genética , Temperatura , Tiogalactosídeos/metabolismo
8.
Gene ; 549(1): 77-84, 2014 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-25046139

RESUMO

Betaine aldehyde dehydrogenase (BADH) catalyzes the synthesis of glycine betaine, a regulator of osmosis, and therefore BADH is considered to play a significant role in response of plants to abiotic stresses. Here, based on the conserved residues of the deduced amino acid sequences of the homologous BADH genes, we cloned the AnBADH gene from the xerophytic leguminous plant Ammopiptanthus nanus by using reverse transcription PCR and rapid amplification of cDNA ends. The full-length cDNA is 1,868 bp long without intron, and contains an open reading frame of 1512 bp, and 3'- and 5'-untranslated regions of 294 and 62 bp. It encodes a 54.71 kDa protein of 503 amino acids. The deduced amino acid sequence shares high homology, conserved amino acid residues and sequence motifs crucial for the function with the BADHs in other leguminous species. The sequence of the open reading frame was used to construct a prokaryotic expression vector pET32a-AnBADH, and transform Escherichia coli. The transformants expressed the heterologous AnBADH gene under the induction of isopropyl ß-D-thiogalactopyranoside, and demonstrated significant enhancement of salt and heat tolerance under the stress conditions of 700 mmol L(-1) NaCl and 55°C high temperature. This result suggests that the AnBADH gene might play a crucial role in adaption of A. nanus to the abiotic stresses, and have the potential to be applied to transgenic operations of commercially important crops for improvement of abiotic tolerance.


Assuntos
Betaína-Aldeído Desidrogenase/metabolismo , Escherichia coli/genética , Escherichia coli/fisiologia , Fabaceae/enzimologia , Genes de Plantas , Aclimatação , Adaptação Fisiológica , Betaína-Aldeído Desidrogenase/genética , Clonagem Molecular , Fabaceae/classificação , Fabaceae/genética , Dados de Sequência Molecular , Filogenia , Folhas de Planta/genética , Tolerância ao Sal , Homologia de Sequência de Aminoácidos , Cloreto de Sódio , Temperatura , Tiogalactosídeos/metabolismo , Transformação Genética
9.
World J Microbiol Biotechnol ; 30(5): 1527-31, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24326910

RESUMO

The cloning and expression of toxic proteins in bacteria have posed a great challenge because of the leaky expression in inducible expression systems. Using artificial gene synthesis and clone screening methods, we identified a mutant T5 promoter, which significantly reduced leaky expression of lac operator. The mutant T5 promoter contains two T deletions at -35 region and may reduce promoter activity. A bacterial lethal gene, Φ174 lytic gene E, was successfully cloned in this system and expressed in the presence of isopropyl ß-D-1-thiogalactopyranoside. The system is compatible with existing T5 inducible expression systems and can be used for the controlled expression of toxic proteins.


Assuntos
Bacteriocinas/genética , Escherichia coli/genética , Plasmídeos/genética , Regiões Promotoras Genéticas , Clonagem Molecular , Expressão Gênica , Genes Bacterianos , Óperon Lac/genética , Mutação , Tiogalactosídeos/metabolismo
10.
Chembiochem ; 14(11): 1331-42, 2013 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-23864426

RESUMO

Galectin-3 is extensively involved in metabolic and disease processes, such as cancer metastasis, thus giving impetus for the design of specific inhibitors targeting this ß-galactose-binding protein. Thiodigalactoside (TDG) presents a scaffold for construction of galectin inhibitors, and its inhibition of galectin-1 has already demonstrated beneficial effects as an adjuvant with vaccine immunotherapy, thereby improving the survival outcome of tumour-challenged mice. A novel approach--replacing galactose with its C2 epimer, talose--offers an alternative framework, as extensions at C2 permit exploitation of a galectin-3-specific binding groove, thereby facilitating the design of selective inhibitors. We report the synthesis of thioditaloside (TDT) and crystal structures of the galectin-3 carbohydrate recognition domain in complexes with TDT and TDG. The different abilities of galactose and talose to anchor to the protein correlate with molecular dynamics studies, likely explaining the relative disaccharide binding affinities. The feasibility of a TDT scaffold to enable access to a particular galectin-3 binding groove and the need for modifications to optimise such a scaffold for use in the design of potent and selective inhibitors are assessed.


Assuntos
Dissacarídeos/química , Galectina 3/antagonistas & inibidores , Tioglicosídeos/química , Sítios de Ligação , Cristalografia por Raios X , Dissacarídeos/síntese química , Dissacarídeos/metabolismo , Galectina 3/metabolismo , Humanos , Ligação de Hidrogênio , Estrutura Terciária de Proteína , Eletricidade Estática , Termodinâmica , Tiogalactosídeos/síntese química , Tiogalactosídeos/química , Tiogalactosídeos/metabolismo , Tioglicosídeos/síntese química , Tioglicosídeos/metabolismo
11.
Chembiochem ; 13(11): 1673-9, 2012 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-22740420

RESUMO

Fluorescently tagged glycosides containing terminal α(1→3) and α(1→4)-linked thiogalactopyranosides have been prepared and tested for resistance to hydrolysis by α-galactosidases. Eight fluorescent glycosides containing either galactose or 5-thiogalactose as the terminal sugar were enzymatically synthesized using galactosyltransferases, with lactosyl glycosides as acceptors and UDP-galactose or UDP-5'-thiogalactose, respectively, as donors. The glycosides were incubated with human α-galactosidase A (CAZy family GH27, a retaining glycosidase), Bacteroides fragilis α-1,3-galactosidase (GH110, an inverting glycosidase), or homogenates of MCF-7 human breast cancer cells or NG108-15 rat glioma cells. Substrate hydrolysis was monitored by capillary electrophoresis with fluorescence detection. All compounds containing terminal O-galactose were readily degraded. Their 5-thiogalactose counterparts were resistant to hydrolysis by human α-galactosidase A and the enzymes present in the cell extracts. B. fragilis α-1,3-galactosidase hydrolyzed both thio- and O-galactoside substrates; however, the thiogalactosides were hydrolyzed at only 1-3 % of the rate of O-galactosides. The hydrolytic resistance of 5-thiogalactose was also confirmed by an in vivo study using cells in culture. The results suggest that 5-thiogalactosides may be useful tools for the study of anabolic pathways in cell extracts or in single cells.


Assuntos
Neoplasias da Mama/metabolismo , Glioma/metabolismo , Tiogalactosídeos/metabolismo , alfa-Galactosidase/metabolismo , Animais , Bacteroides fragilis/enzimologia , Neoplasias da Mama/patologia , Feminino , Glioma/patologia , Humanos , Hidrólise , Estrutura Molecular , Ratos , Tiogalactosídeos/síntese química , Tiogalactosídeos/química , Células Tumorais Cultivadas
12.
FEBS J ; 279(2): 193-202, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22059385

RESUMO

Galectins are involved in many cellular processes due to their ability to bind carbohydrates. Understanding their functions has shown the necessity for potent and specific galectin inhibitors. Human galectin-7 (hGal-7), in particular, has been highlighted as an important marker in many types of cancer by either inhibiting or promoting tumour growth. Producing ligands able to selectively target hGal-7 will offer promising tools for deciphering cancer processes in which hGal-7 is involved as well as present potential solutions for future therapeutics. Here we report the high resolution crystal structure of hGal-7 in complex with a synthetic 2-O-benzylphosphate-galactoside inhibitor (which is > 60-fold more potent than its parent galactoside). The high resolution crystallographic analysis highlights the validity of using saccharide derivatives, conserving properties of the galactose binding, while enhanced affinity and specificity is provided by the added phosphate group. This structural information will allow the design of further inhibitors with improved potency and specificity.


Assuntos
Antineoplásicos/química , Antineoplásicos/farmacologia , Galactosamina/análogos & derivados , Galactosídeos/química , Galactosídeos/farmacologia , Galectinas/antagonistas & inibidores , Galectinas/química , Tiogalactosídeos/química , Tiogalactosídeos/farmacologia , Antineoplásicos/metabolismo , Cristalografia por Raios X , Cisteína/química , Bases de Dados de Proteínas , Dimerização , Desenho de Fármacos , Galactosamina/química , Galactosamina/metabolismo , Galactosamina/farmacologia , Galactosídeos/metabolismo , Galectinas/genética , Galectinas/metabolismo , Humanos , Ligação de Hidrogênio , Cinética , Ligantes , Modelos Moleculares , Conformação Molecular , Fosfatos/química , Fosfatos/metabolismo , Fosfatos/farmacologia , Ligação Proteica , Proteínas Recombinantes/antagonistas & inibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Tiogalactosídeos/metabolismo
13.
Cancer Lett ; 299(2): 95-110, 2010 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-20826047

RESUMO

High level galectin-1 expression results in cancer cell evasion of the immune response, increased tumour survival and aggressive metastases. Using a galectin-1 polyclonal antibody, high levels of galectin-1 protein were shown to be expressed by breast cancer cells established from FVB/N MMTV-c-neu mice as well as by the B16F10 melanoma cell line. In mixed lymphocyte cultures using tumour cells as antigenic stimulators, addition of recombinant galectin-1 dose-dependently inhibited lymphocyte production. Disaccharides were identified that inhibited galectin-1 function and increased growth and activation of CD8(+) CTL's killing cancer cells. X-ray crystallographic structures of human galectin-1 in complex with inhibitory disaccharides revealed their mode of binding. Combining galectin-blocking carbohydrates as adjuvants with vaccine immunotherapy in vivo to promote immune responses significantly decreased tumour progression and improved the outcomes for tumour challenged mice. This is the first report showing that suitably selected galectin-1 blocking disaccharides will act as adjuvants promoting vaccine stimulated immune responses against tumours in vivo.


Assuntos
Dissacarídeos/farmacologia , Galectinas/metabolismo , Imunidade/efeitos dos fármacos , Neoplasias Mamárias Experimentais/imunologia , Animais , Western Blotting , Linfócitos T CD8-Positivos/imunologia , Vacinas Anticâncer/administração & dosagem , Vacinas Anticâncer/imunologia , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Cristalografia por Raios X , Citotoxicidade Imunológica/efeitos dos fármacos , Dissacarídeos/química , Dissacarídeos/metabolismo , Feminino , Galectina 1/química , Galectina 1/genética , Galectina 1/metabolismo , Galectina 3/química , Galectina 3/genética , Galectina 3/metabolismo , Galectinas/química , Galectinas/genética , Humanos , Imunoterapia/métodos , Neoplasias Mamárias Experimentais/patologia , Neoplasias Mamárias Experimentais/terapia , Camundongos , Camundongos Endogâmicos , Modelos Moleculares , Ligação Proteica , Tiogalactosídeos/química , Tiogalactosídeos/metabolismo , Tiogalactosídeos/farmacologia , Carga Tumoral/efeitos dos fármacos
14.
Biophys J ; 96(3): 887-906, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19186128

RESUMO

The lac operon has been a paradigm for genetic regulation with positive feedback, and several modeling studies have described its dynamics at various levels of detail. However, it has not yet been analyzed how stochasticity can enrich the system's behavior, creating effects that are not observed in the deterministic case. To address this problem we use a comparative approach. We develop a reaction network for the dynamics of the lac operon genetic switch and derive corresponding deterministic and stochastic models that incorporate biological details. We then analyze the effects of key biomolecular mechanisms, such as promoter strength and binding affinities, on the behavior of the models. No assumptions or approximations are made when building the models other than those utilized in the reaction network. Thus, we are able to carry out a meaningful comparison between the predictions of the two models to demonstrate genuine effects of stochasticity. Such a comparison reveals that in the presence of stochasticity, certain biomolecular mechanisms can profoundly influence the region where the system exhibits bistability, a key characteristic of the lac operon dynamics. For these cases, the temporal asymptotic behavior of the deterministic model remains unchanged, indicating a role of stochasticity in modulating the behavior of the system.


Assuntos
Redes Reguladoras de Genes , Óperon Lac/genética , Modelos Genéticos , Espaço Extracelular/metabolismo , Regulação Bacteriana da Expressão Gênica , Sensibilidade e Especificidade , Processos Estocásticos , Tiogalactosídeos/metabolismo , Fatores de Tempo
15.
J Theor Biol ; 256(1): 14-28, 2009 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-18848570

RESUMO

In the presence of gratuitous inducers, the lac operon of Escherichia coli exhibits bistability. Most models in the literature assume that the inducer enters the cell via the carrier (permease), and exits by a diffusion-like process. The diffusive influx and carrier efflux are neglected. However, analysis of the data shows that in non-induced cells, the diffusive influx is comparable to the carrier influx, and in induced cells, the carrier efflux is comparable to the diffusive efflux. Since bistability entails the coexistence of steady states corresponding to both non-induced and induced cells, neither one of these fluxes can be ignored. We present a model accounting for both fluxes, and show that: (1) The thresholds (i.e., the extracellular inducer levels at which transcription turns on or off) are profoundly affected by both fluxes. The diffusive influx reduces the on threshold, and eliminates irreversible bistability, a phenomenon that is inconsistent with data. The carrier efflux increases the off threshold, and abolishes bistability at large permease activities, a conclusion that can be tested experimentally. (2) The thresholds are well approximated by simple analytical expressions obtained by considering two limiting cases (no carrier efflux and no diffusive influx). (3) The simulations are in good agreement with the data for isopropyl thiogalactoside (IPTG), but somewhat discrepant with respect to the data for thiomethyl galactoside (TMG). We discuss the potential sources of the discrepancy.


Assuntos
Simulação por Computador , Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica , Óperon Lac , Modelos Genéticos , Ativação Transcricional/fisiologia , Transporte Biológico , Expressão Gênica , Isopropiltiogalactosídeo/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Metilgalactosídeos/metabolismo , Tiogalactosídeos/metabolismo
16.
J Med Chem ; 51(24): 8109-14, 2008 Dec 25.
Artigo em Inglês | MEDLINE | ID: mdl-19053747

RESUMO

Aromatic 3,3'-diesters of thiodigalactoside were synthesized in a rapid three-step sequence from commercially available thiodigalactoside and evaluated as inhibitors of cancer- and immunity-related galectins. For each of galectins-1, -3, -7, and -9N-terminal domain, aromatic 3,3'-diesters of thiodigalactoside were found to have affinities in the low micromolar range, which represents a 7-70 fold enhancement over thiodigalactoside itself. No significant improvement was found for galectin-8 N-terminal domain. Two of the compounds were selected for testing in cell culture and were shown to have potent antimigratory effects on human PC-3 prostate and human A549 nonsmall-cell lung cancer cells.


Assuntos
Galectinas/química , Neoplasias Pulmonares/terapia , Neoplasias da Próstata/terapia , Tiogalactosídeos/metabolismo , Linhagem Celular Tumoral , Movimento Celular , Desenho de Fármacos , Ensaios de Seleção de Medicamentos Antitumorais , Ésteres , Humanos , Concentração Inibidora 50 , Cinética , Masculino , Modelos Químicos , Estrutura Terciária de Proteína , Tiogalactosídeos/química
17.
Proc Natl Acad Sci U S A ; 105(26): 8896-901, 2008 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-18567672

RESUMO

The effect of bulk-phase pH on the apparent affinity (K(d)(app)) of purified wild-type lactose permease (LacY) for sugars was studied. K(d)(app) values were determined by ligand-induced changes in the fluorescence of either of two covalently bound fluorescent reporters positioned away from the sugar-binding site. K(d)(app) for three different galactopyranosides was determined over a pH range from 5.5 to 11. A remarkably high pK(a) of approximately 10.5 was obtained for all sugars. Kinetic data for thiodigalactoside binding measured from pH 6 to 10 show that decreased affinity for sugar at alkaline pH is due specifically to increased reverse rate. A similar effect was also observed with nitrophenylgalactoside by using a direct binding assay. Because affinity for sugar remains constant from pH 5.5 to pH 9.0, it follows that LacY is fully protonated with respect to sugar binding under physiological conditions of pH. The results are consistent with the conclusion that LacY is protonated before sugar binding during lactose/H(+) symport in either direction across the membrane.


Assuntos
Metabolismo dos Carboidratos , Escherichia coli/enzimologia , Proteínas de Membrana Transportadoras/metabolismo , Prótons , Naftalenossulfonato de Anilina , Transporte Biológico , Fluorescência , Concentração de Íons de Hidrogênio , Cinética , Lactose/metabolismo , Maleimidas , Melibiose/metabolismo , Proteínas de Membrana Transportadoras/química , Nitrofenilgalactosídeos/metabolismo , Estrutura Secundária de Proteína , Tiogalactosídeos/metabolismo
18.
J Mol Biol ; 379(4): 695-703, 2008 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-18485365

RESUMO

The lactose permease of Escherichia coli (LacY) is a highly dynamic membrane transport protein, while the Cys154-->Gly mutant is crippled conformationally. The mutant binds sugar with high affinity, but catalyzes very little translocation across the membrane. In order to further investigate the defect in the mutant, fluorescent maleimides were used to examine the accessibility/reactivity of single-Cys LacY in right-side-out membrane vesicles. As shown previously, sugar binding induces an increase in reactivity of single-Cys replacements in the tightly packed periplasmic domain of wild-type LacY, while decreased reactivity is observed on the cytoplasmic side. Thus, the predominant population of wild-type LacY in the membrane is in an inward-facing conformation in the absence of sugar, sugar binding induces opening of a hydrophilic pathway on the periplasmic side, and the sugar-binding site is alternatively accessible to either side of the membrane. In striking contrast, the accessibility/reactivity of periplasmic Cys replacements in the Cys154-->Gly background is very high in the absence of sugar, and sugar binding has little or no effect. The observations indicate that an open hydrophilic pathway is present on the periplasmic side of the Cys154-->Gly mutant and that this pathway is unaffected by ligand binding, a conclusion consistent with findings obtained from single-molecule fluorescence and double electron-electron resonance.


Assuntos
Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Proteínas de Transporte de Monossacarídeos/genética , Proteínas de Transporte de Monossacarídeos/metabolismo , Simportadores/genética , Simportadores/metabolismo , Alquilação , Substituição de Aminoácidos , Transporte Biológico Ativo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/química , Corantes Fluorescentes , Interações Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Proteínas de Transporte de Monossacarídeos/química , Mutagênese Sítio-Dirigida , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Rodaminas , Simportadores/química , Tiogalactosídeos/metabolismo
19.
Bull Math Biol ; 70(4): 1032-64, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18246403

RESUMO

The lac operon of Escherichia coli can exhibit bistability. Early studies showed that bistability occurs during growth on TMG/succinate and lactose+glucose, but not during growth on lactose. More recently, studies with lacGFP-transfected cells show bistability during growth on TMG/succinate, but not during growth on lactose and lactose+glucose. In the literature, these results are invariably attributed to variations in the destabilizing effect of the positive feedback generated by induction. Specifically, during growth on TMG/succinate, lac induction generates strong positive feedback because the permease stimulates the accumulation of intracellular TMG, which in turn, promotes the synthesis of even more permease. This positive feedback is attenuated during growth on lactose because hydrolysis of intracellular lactose by beta-galactosidase suppresses the stimulatory effect of the permease. It is attenuated even more during growth on lactose + glucose because glucose inhibits the uptake of lactose. But it is clear that the stabilizing effect of dilution also changes dramatically as a function of the medium composition. For instance, during growth on TMG/succinate, the dilution rate of lac permease is proportional to its activity, e, because the specific growth rate is independent of e (it is completely determined by the concentration of succinate). However, during growth on lactose, the dilution rate of the permease is proportional to e2 because the specific growth rate is proportional to the specific lactose uptake rate, which in turn, proportional to e. We show that: (a) This dependence on e2 creates such a strong stabilizing effect that bistability is virtually impossible during growth on lactose, even in the face of the intense positive feedback generated by induction. (b) This stabilizing effect is weakened during growth on lactose+glucose because the specific growth rate on glucose is independent of e, so that the dilution rate once again contains a term that is proportional to e. These results imply that the lac operon is much more prone to bistability if the medium contains carbon sources that cannot be metabolized by the lac enzymes, e.g., succinate during growth on TMG/succinate and glucose during growth on lactose+glucose. We discuss the experimental data in the light of these results.


Assuntos
Escherichia coli/genética , Escherichia coli/metabolismo , Óperon Lac , Modelos Biológicos , DNA Bacteriano/genética , DNA Bacteriano/metabolismo , Escherichia coli/crescimento & desenvolvimento , Regulação Bacteriana da Expressão Gênica , Glucose/metabolismo , Lactose/metabolismo , Matemática , Metilgalactosídeos/metabolismo , Ácido Succínico/metabolismo , Tiogalactosídeos/metabolismo
20.
Biochemistry ; 45(51): 15279-87, 2006 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-17176050

RESUMO

Trp151 in the lactose permease of Escherichia coli (LacY) is an important component of the sugar-binding site and the only Trp residue out of six that is in close proximity to the galactopyranoside in the structure (1PV7). The short distance between Trp151 and the sugar is favorable for Förster resonance energy transfer (FRET) to nitrophenyl or dansyl derivatives with the fluorophore at the anomeric position of galactose. Modeling of 4-nitrophenyl-alpha-d-galactopyranoside (alpha-NPG) in the binding-site of LacY places the nitrophenyl moiety about 12 A away from Trp151, a distance commensurate with the Förster distance for a Trp-nitrobenzoyl pair. We demonstrate here that alpha-NPG binding to LacY containing all six native Trp residues causes galactopyranoside-specific FRET from Trp151. Moreover, binding of alpha-NPG is sufficiently slow to resolve time-dependent fluorescence changes by stopped-flow. The rate of change in Trp --> alpha-NPG FRET is linearly dependent upon sugar concentration, which allows estimation of kinetic parameters for binding. Furthermore, 2-(4'-maleimidylanilino)naphthalene-6-sulfonic acid (MIANS) covalently attached to the cytoplasmic end of helix X is sensitive to sugar binding, reflecting a ligand-induced conformational change. Stopped-flow kinetics of Trp --> alpha-NPG FRET and sugar-induced changes in MIANS fluorescence in the same protein reveal a two-step process: a relatively rapid binding step detected by Trp151 --> alpha-NPG FRET followed by a slower conformational change detected by a change in MIANS fluorescence.


Assuntos
Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Transferência Ressonante de Energia de Fluorescência , Proteínas de Transporte de Monossacarídeos/química , Proteínas de Transporte de Monossacarídeos/metabolismo , Simportadores/química , Simportadores/metabolismo , Substituição de Aminoácidos/genética , Naftalenossulfonato de Anilina/metabolismo , Sítios de Ligação/genética , Cristalografia por Raios X , Proteínas de Escherichia coli/genética , Ligantes , Modelos Químicos , Proteínas de Transporte de Monossacarídeos/genética , Nitrobenzenos/metabolismo , Conformação Proteica , Simportadores/genética , Termodinâmica , Tiogalactosídeos/metabolismo , Triptofano/química , Triptofano/genética
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA