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Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.
Haile, Simon; Corbett, Richard D; Bilobram, Steve; Bye, Morgan H; Kirk, Heather; Pandoh, Pawan; Trinh, Eva; MacLeod, Tina; McDonald, Helen; Bala, Miruna; Miller, Diane; Novik, Karen; Coope, Robin J; Moore, Richard A; Zhao, Yongjun; Mungall, Andrew J; Ma, Yussanne; Holt, Rob A; Jones, Steven J; Marra, Marco A.
Affiliation
  • Haile S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Corbett RD; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Bilobram S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Bye MH; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Kirk H; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Pandoh P; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Trinh E; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • MacLeod T; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • McDonald H; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Bala M; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Miller D; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Novik K; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Coope RJ; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Moore RA; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Zhao Y; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Mungall AJ; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Ma Y; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Holt RA; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Jones SJ; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
  • Marra MA; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Nucleic Acids Res ; 47(2): e12, 2019 01 25.
Article in En | MEDLINE | ID: mdl-30418619
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Artifacts / Sequence Analysis, DNA / High-Throughput Nucleotide Sequencing / Fixatives / Formaldehyde Limits: Animals Language: En Journal: Nucleic Acids Res Year: 2019 Document type: Article
Fulltext
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PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Artifacts / Sequence Analysis, DNA / High-Throughput Nucleotide Sequencing / Fixatives / Formaldehyde Limits: Animals Language: En Journal: Nucleic Acids Res Year: 2019 Document type: Article