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Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Bassano, Irene; Ramachandran, Vinoy K; Khalifa, Mohammad S; Lilley, Chris J; Brown, Mathew R; van Aerle, Ronny; Denise, Hubert; Rowe, William; George, Airey; Cairns, Edward; Wierzbicki, Claudia; Pickwell, Natalie D; Carlile, Matthew; Holmes, Nadine; Payne, Alexander; Loose, Matthew; Burke, Terry A; Paterson, Steve; Wade, Matthew J; Grimsley, Jasmine M S.
Affiliation
  • Bassano I; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Ramachandran VK; Department of Infectious Disease, Imperial College London, London SW7 2AZ, UK.
  • Khalifa MS; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Lilley CJ; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Brown MR; Division of Biosciences, College of Health, Medicine and Life Sciences, Brunel University, London UB8 3PH, UK.
  • van Aerle R; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Denise H; School of Engineering, Newcastle University, Newcastle-upon-Tyne NE1 7RU, UK.
  • Rowe W; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • George A; International Centre of Excellence for Aquatic Animal Health, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Clyst Honiton EX5 2FN, UK.
  • Cairns E; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Wierzbicki C; Analytics & Data Science Directorate, UK Health Security Agency, London SW1P 3JR, UK.
  • Pickwell ND; Centre for Genomic Research and NERC Environmental Omics Facility, Institute of Infection, Veterinary and Ecological Sciences (IVES), University of Liverpool, Liverpool L69 7ZB, UK.
  • Carlile M; Centre for Genomic Research and NERC Environmental Omics Facility, Institute of Infection, Veterinary and Ecological Sciences (IVES), University of Liverpool, Liverpool L69 7ZB, UK.
  • Holmes N; Centre for Genomic Research and NERC Environmental Omics Facility, Institute of Infection, Veterinary and Ecological Sciences (IVES), University of Liverpool, Liverpool L69 7ZB, UK.
  • Payne A; DeepSeq, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
  • Loose M; DeepSeq, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
  • Burke TA; DeepSeq, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
  • Paterson S; DeepSeq, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
  • Wade MJ; DeepSeq, Centre for Genetics and Genomics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
  • Grimsley JMS; NERC Environmental Omics Facility, Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK.
Microb Genom ; 9(4)2023 04.
Article in En | MEDLINE | ID: mdl-37074153
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: SARS-CoV-2 / COVID-19 Type of study: Prognostic_studies / Risk_factors_studies / Screening_studies Limits: Humans Language: En Journal: Microb Genom Year: 2023 Document type: Article
Fulltext
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: SARS-CoV-2 / COVID-19 Type of study: Prognostic_studies / Risk_factors_studies / Screening_studies Limits: Humans Language: En Journal: Microb Genom Year: 2023 Document type: Article