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Plant-on-chip: Core morphogenesis processes in the tiny plant Wolffia australiana.
Li, Feng; Yang, Jing-Jing; Sun, Zong-Yi; Wang, Lei; Qi, Le-Yao; A, Sina; Liu, Yi-Qun; Zhang, Hong-Mei; Dang, Lei-Fan; Wang, Shu-Jing; Luo, Chun-Xiong; Nian, Wei-Feng; O'Conner, Seth; Ju, Long-Zhen; Quan, Wei-Peng; Li, Xiao-Kang; Wang, Chao; Wang, De-Peng; You, Han-Li; Cheng, Zhu-Kuan; Yan, Jia; Tang, Fu-Chou; Yang, De-Chang; Xia, Chu-Wei; Gao, Ge; Wang, Yan; Zhang, Bao-Cai; Zhou, Yi-Hua; Guo, Xing; Xiang, Sun-Huan; Liu, Huan; Peng, Tian-Bo; Su, Xiao-Dong; Chen, Yong; Ouyang, Qi; Wang, Dong-Hui; Zhang, Da-Ming; Xu, Zhi-Hong; Hou, Hong-Wei; Bai, Shu-Nong; Li, Ling.
Affiliation
  • Li F; The High School Affiliated to Renmin University of China, Beijing 100080, China.
  • Yang JJ; Center of Quantitative Biology, Peking University, Beijing 100871, China.
  • Sun ZY; State Key Laboratory of Protein & Plant Gene Research, Peking University, Beijing 100871, China.
  • Wang L; College of Life Sciences, Peking University, Beijing 100871, China.
  • Qi LY; Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China.
  • A S; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • Liu YQ; Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA.
  • Zhang HM; The High School Affiliated to Renmin University of China, Beijing 100080, China.
  • Dang LF; The High School Affiliated to Renmin University of China, Beijing 100080, China.
  • Wang SJ; College of Life Sciences, Peking University, Beijing 100871, China.
  • Luo CX; College of Life Sciences, Peking University, Beijing 100871, China.
  • Nian WF; College of Life Sciences, Peking University, Beijing 100871, China.
  • O'Conner S; Center of Quantitative Biology, Peking University, Beijing 100871, China.
  • Ju LZ; Center of Quantitative Biology, Peking University, Beijing 100871, China.
  • Quan WP; The High School Affiliated to Renmin University of China, Beijing 100080, China.
  • Li XK; Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA.
  • Wang C; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • Wang DP; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • You HL; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • Cheng ZK; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • Yan J; GrandOmics Biosciences Ltd., Wuhan 430076, China.
  • Tang FC; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
  • Yang DC; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
  • Xia CW; College of Life Sciences, Peking University, Beijing 100871, China.
  • Gao G; College of Life Sciences, Peking University, Beijing 100871, China.
  • Wang Y; State Key Laboratory of Protein & Plant Gene Research, Peking University, Beijing 100871, China.
  • Zhang BC; College of Life Sciences, Peking University, Beijing 100871, China.
  • Zhou YH; Biomedical Pioneering Innovative Center (BIOPIC) and Beijing Advanced Innovation Center for Genomics (ICG), Beijing 100871, China.
  • Guo X; Center for Bioinformatics (CBI), Peking University, Beijing 100871, China.
  • Xiang SH; State Key Laboratory of Protein & Plant Gene Research, Peking University, Beijing 100871, China.
  • Liu H; College of Life Sciences, Peking University, Beijing 100871, China.
  • Peng TB; Biomedical Pioneering Innovative Center (BIOPIC) and Beijing Advanced Innovation Center for Genomics (ICG), Beijing 100871, China.
  • Su XD; Center for Bioinformatics (CBI), Peking University, Beijing 100871, China.
  • Chen Y; State Key Laboratory of Protein & Plant Gene Research, Peking University, Beijing 100871, China.
  • Ouyang Q; College of Life Sciences, Peking University, Beijing 100871, China.
  • Wang DH; Biomedical Pioneering Innovative Center (BIOPIC) and Beijing Advanced Innovation Center for Genomics (ICG), Beijing 100871, China.
  • Zhang DM; Center for Bioinformatics (CBI), Peking University, Beijing 100871, China.
  • Xu ZH; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
  • Hou HW; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
  • Bai SN; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
  • Li L; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China.
PNAS Nexus ; 2(5): pgad141, 2023 May.
Article in En | MEDLINE | ID: mdl-37181047
ABSTRACT
A plant can be thought of as a colony comprising numerous growth buds, each developing to its own rhythm. Such lack of synchrony impedes efforts to describe core principles of plant morphogenesis, dissect the underlying mechanisms, and identify regulators. Here, we use the minimalist known angiosperm to overcome this challenge and provide a model system for plant morphogenesis. We present a detailed morphological description of the monocot Wolffia australiana, as well as high-quality genome information. Further, we developed the plant-on-chip culture system and demonstrate the application of advanced technologies such as single-nucleus RNA-sequencing, protein structure prediction, and gene editing. We provide proof-of-concept examples that illustrate how W. australiana can decipher the core regulatory mechanisms of plant morphogenesis.
Key words

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: PNAS Nexus Year: 2023 Document type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Type of study: Prognostic_studies Language: En Journal: PNAS Nexus Year: 2023 Document type: Article