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Cooperative AI training for cardiothoracic segmentation in computed tomography: An iterative multi-center annotation approach.
Lassen-Schmidt, Bianca; Baessler, Bettina; Gutberlet, Matthias; Berger, Josephine; Brendel, Jan M; Bucher, Andreas M; Emrich, Tilman; Fervers, Philipp; Kottlors, Jonathan; Kuhl, Philipp; May, Matthias S; Penzkofer, Tobias; Persigehl, Thorsten; Renz, Diane; Sähn, Marwin-Jonathan; Siegler, Lisa; Kohlmann, Peter; Köhn, Alexander; Link, Florian; Meine, Hans; Thiemann, Marc T; Hahn, Horst K; Sieren, Malte M.
Affiliation
  • Lassen-Schmidt B; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: bianca.lassen-schmidt@mevis.fraunhofer.de.
  • Baessler B; Department of Diagnostic and Interventional Radiology, University Hospital Würzburg, Oberdürrbacher Str. 6 97080, Würzburg, Germany. Electronic address: baessler_b@ukw.de.
  • Gutberlet M; Herzzentrum - University Leipzig, Strümpellstraße 39 04289, Leipzig, Germany. Electronic address: Matthias.Gutberlet@helios-gesundheit.de.
  • Berger J; Department of Radiology, Diagnostic and Interventional Radiology, University of Tübingen, Hoppe-Seyler-Straße 3 72076, Tübingen, Germany. Electronic address: Josephine.Berger@med.uni-tuebingen.de.
  • Brendel JM; Department of Radiology, Diagnostic and Interventional Radiology, University of Tübingen, Hoppe-Seyler-Straße 3 72076, Tübingen, Germany. Electronic address: jan.brendel@med.uni-tuebingen.de.
  • Bucher AM; Department of Diagnostic and Interventional Radiology, University Hospital Frankfurt, Theodor-Stern-Kai 7 60596, Frankfurt am Main, Germany. Electronic address: bucher@med.uni-frankfurt.de.
  • Emrich T; University Medical Center of Johannes-Gutenberg-University, Langenbeckstraße 1 55131, Mainz, Germany; Department of Diagnostic and Interventional Radiology, and Division of Cardiovascular Imaging, Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, USA
  • Fervers P; Department of Diagnostic and Interventional Radiology, University Hospital Cologne, Kerpener Str. 62 50937, Köln, Germany. Electronic address: Philipp.Fervers@uk-koeln.de.
  • Kottlors J; Department of Diagnostic and Interventional Radiology, University Hospital Cologne, Kerpener Str. 62 50937, Köln, Germany. Electronic address: Jonathan.Kottlors@uk-koeln.de.
  • Kuhl P; Department of Diagnostic and Interventional Radiology, University Hospital Würzburg, Oberdürrbacher Str. 6 97080, Würzburg, Germany. Electronic address: Kuhl_P@ukw.de.
  • May MS; Department of Radiology, University Hospital Erlangen, Maximilianspl. 1 91054, Erlangen, Germany. Electronic address: matthias.may@uk-erlangen.de.
  • Penzkofer T; Department of Radiology, Charité, University Hospital Berlin, Augustenburger Pl. 1 13353, Berlin, Germany. Electronic address: tobias.penzkofer@charite.de.
  • Persigehl T; Department of Diagnostic and Interventional Radiology, University Hospital Cologne, Kerpener Str. 62 50937, Köln, Germany. Electronic address: thorsten.persigehl@uk-koeln.de.
  • Renz D; Institute of Diagnostic and Interventional Radiology, Department of Pediatric Radiology, Hannover Medical School, Carl-Neuberg-Straße 1 30625, Hannover, Germany. Electronic address: renz.diane@mh-hannover.de.
  • Sähn MJ; Department of Diagnostic and Interventional Radiology, University Hospital Aachen, Pauwelsstraße 30 52074, Aachen, Germany. Electronic address: msaehn@ukaachen.de.
  • Siegler L; Department of Radiology, University Hospital Erlangen, Maximilianspl. 1 91054, Erlangen, Germany. Electronic address: Lisa.Siegler@uk-erlangen.de.
  • Kohlmann P; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: peter.kohlmann@mevis.fraunhofer.de.
  • Köhn A; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: alexander.koehn@mevis.fraunhofer.de.
  • Link F; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: florian.link@mevis.fraunhofer.de.
  • Meine H; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: hans.meine@mevis.fraunhofer.de.
  • Thiemann MT; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany. Electronic address: marc.tim.thiemann@mevis.fraunhofer.de.
  • Hahn HK; Fraunhofer Institute for Digital Medicine MEVIS, Max-von-Laue-Str. 2 28359, Bremen, Germany; University of Bremen, Department of Mathematics/Computer Science, Bibliothekstraße 5 28359, Bremen, Germany. Electronic address: horst.hahn@mevis.fraunhofer.de.
  • Sieren MM; Department of Radiology and Radiotherapy, University Hospital Schleswig-Holstein, Ratzeburger Allee 160 23562, Lübeck, Germany. Electronic address: malte.sieren@uksh.de.
Eur J Radiol ; 176: 111534, 2024 Jul.
Article in En | MEDLINE | ID: mdl-38820951
ABSTRACT

PURPOSE:

Radiological reporting is transitioning to quantitative analysis, requiring large-scale multi-center validation of biomarkers. A major prerequisite and bottleneck for this task is the voxelwise annotation of image data, which is time-consuming for large cohorts. In this study, we propose an iterative training workflow to support and facilitate such segmentation tasks, specifically for high-resolution thoracic CT data.

METHODS:

Our study included 132 thoracic CT scans from clinical practice, annotated by 13 radiologists. In three iterative training experiments, we aimed to improve and accelerate segmentation of the heart and mediastinum. Each experiment started with manual segmentation of 5-25 CT scans, which served as training data for a nnU-Net. Further iterations incorporated AI pre-segmentation and human correction to improve accuracy, accelerate the annotation process, and reduce human involvement over time.

RESULTS:

Results showed consistent improvement in AI model quality with each iteration. Resampled datasets improved the Dice similarity coefficients for both the heart (DCS 0.91 [0.88; 0.92]) and the mediastinum (DCS 0.95 [0.94; 0.95]). Our AI models reduced human interaction time by 50 % for heart and 70 % for mediastinum segmentation in the most potent iteration. A model trained on only five datasets achieved satisfactory results (DCS > 0.90).

CONCLUSIONS:

The iterative training workflow provides an efficient method for training AI-based segmentation models in multi-center studies, improving accuracy over time and simultaneously reducing human intervention. Future work will explore the use of fewer initial datasets and additional pre-processing methods to enhance model quality.
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Tomography, X-Ray Computed Limits: Humans Language: En Journal: Eur J Radiol Year: 2024 Document type: Article

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Tomography, X-Ray Computed Limits: Humans Language: En Journal: Eur J Radiol Year: 2024 Document type: Article