A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system.
Sci China Life Sci
; 54(9): 835-40, 2011 Sep.
Article
em En
| MEDLINE
| ID: mdl-21809037
ABSTRACT
Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Genoma Bacteriano
/
Bactérias Gram-Negativas
Idioma:
En
Revista:
Sci China Life Sci
Ano de publicação:
2011
Tipo de documento:
Article