Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Olson, Nathan D; Lund, Steven P; Colman, Rebecca E; Foster, Jeffrey T; Sahl, Jason W; Schupp, James M; Keim, Paul; Morrow, Jayne B; Salit, Marc L; Zook, Justin M

Olson, Nathan D; Lund, Steven P; Colman, Rebecca E; Foster, Jeffrey T; Sahl, Jason W; Schupp, James M; Keim, Paul; Morrow, Jayne B; Salit, Marc L; Zook, Justin M.

Afiliação

Olson ND; Biosystems and Biomaterials Division, Material Measurement Laboratory, National Institute of Standards and Technology , Gaithersburg, MD, USA.
Lund SP; Statistical Engineering Division, Information Technology Laboratory, National Institute of Standards and Technology , Gaithersburg, MD, USA.
Colman RE; Division of Pathogen Genomics, Translational Genomics Research Institute , Flagstaff, AZ, USA.
Foster JT; Center for Microbial Genetics and Genomics, Northern Arizona University , Flagstaff, AZ, USA.
Sahl JW; Division of Pathogen Genomics, Translational Genomics Research Institute , Flagstaff, AZ, USA ; Center for Microbial Genetics and Genomics, Northern Arizona University , Flagstaff, AZ, USA.
Schupp JM; Division of Pathogen Genomics, Translational Genomics Research Institute , Flagstaff, AZ, USA.
Keim P; Division of Pathogen Genomics, Translational Genomics Research Institute , Flagstaff, AZ, USA ; Center for Microbial Genetics and Genomics, Northern Arizona University , Flagstaff, AZ, USA.
Morrow JB; Biosystems and Biomaterials Division, Material Measurement Laboratory, National Institute of Standards and Technology , Gaithersburg, MD, USA.
Salit ML; Biosystems and Biomaterials Division, Material Measurement Laboratory, National Institute of Standards and Technology , Gaithersburg, MD, USA ; Department of Bioengineering, Stanford University , Stanford, CA, USA.
Zook JM; Biosystems and Biomaterials Division, Material Measurement Laboratory, National Institute of Standards and Technology , Gaithersburg, MD, USA.

Front Genet ; 6: 235, 2015.

Article em En | MEDLINE | ID: mdl-26217378

Palavras-chave

indel; next-generation sequencing; performance metrics; single nucleotide variants; variant calling

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Guideline Idioma: En Revista: Front Genet Ano de publicação: 2015 Tipo de documento: Article

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