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Simulated Solute Tempering in Fully Polarizable Hybrid QM/MM Molecular Dynamics Simulations.
Schwörer, Magnus; Wichmann, Christoph; Gawehn, Erik; Mathias, Gerald.
Afiliação
  • Schwörer M; Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians Universität München , Oettingenstr. 67, 80538 München, Germany.
  • Wichmann C; Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians Universität München , Oettingenstr. 67, 80538 München, Germany.
  • Gawehn E; Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians Universität München , Oettingenstr. 67, 80538 München, Germany.
  • Mathias G; Lehrstuhl für BioMolekulare Optik, Ludwig-Maximilians Universität München , Oettingenstr. 67, 80538 München, Germany.
J Chem Theory Comput ; 12(3): 992-9, 2016 Mar 08.
Article em En | MEDLINE | ID: mdl-26835754
We successfully apply a solute tempering approach, which substantially reduces the large number of temperature rungs required in conventional tempering methods by solvent charge scaling, to hybrid molecular dynamics simulations combining quantum mechanics with molecular mechanics (QM/MM). Specifically, we integrate a combination of density functional theory (DFT) and polarizable MM (PMM) force fields into the simulated solute tempering (SST) concept. We show that the required DFT/PMM-SST weight parameters can be obtained from inexpensive calculations and that for alanine dipeptide (DFT) in PMM water three rungs suffice to cover the temperature range from 300 to 550 K.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Teoria Quântica / Alanina / Dipeptídeos / Simulação de Dinâmica Molecular Idioma: En Revista: J Chem Theory Comput Ano de publicação: 2016 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Teoria Quântica / Alanina / Dipeptídeos / Simulação de Dinâmica Molecular Idioma: En Revista: J Chem Theory Comput Ano de publicação: 2016 Tipo de documento: Article