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Four simple recommendations to encourage best practices in research software.
Jiménez, Rafael C; Kuzak, Mateusz; Alhamdoosh, Monther; Barker, Michelle; Batut, Bérénice; Borg, Mikael; Capella-Gutierrez, Salvador; Chue Hong, Neil; Cook, Martin; Corpas, Manuel; Flannery, Madison; Garcia, Leyla; Gelpí, Josep Ll; Gladman, Simon; Goble, Carole; González Ferreiro, Montserrat; Gonzalez-Beltran, Alejandra; Griffin, Philippa C; Grüning, Björn; Hagberg, Jonas; Holub, Petr; Hooft, Rob; Ison, Jon; Katz, Daniel S; Leskosek, Brane; López Gómez, Federico; Oliveira, Luis J; Mellor, David; Mosbergen, Rowland; Mulder, Nicola; Perez-Riverol, Yasset; Pergl, Robert; Pichler, Horst; Pope, Bernard; Sanz, Ferran; Schneider, Maria V; Stodden, Victoria; Suchecki, Radoslaw; Svobodová Vareková, Radka; Talvik, Harry-Anton; Todorov, Ilian; Treloar, Andrew; Tyagi, Sonika; van Gompel, Maarten; Vaughan, Daniel; Via, Allegra; Wang, Xiaochuan; Watson-Haigh, Nathan S; Crouch, Steve.
Afiliação
  • Jiménez RC; ELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Kuzak M; Netherlands eScience Center, Science Park 140, Amsterdam, 1098 XG, Netherlands.
  • Alhamdoosh M; CSL Limited, Bio21 Institute, 30 Flemington Road, Parkville, Victoria, 3010, Australia.
  • Barker M; National eResearch Collaboration Tools and Resources, Victoria, 3010, Australia.
  • Batut B; ELIXIR-DE and de.NBI, Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.
  • Borg M; ELIXIR-SE, National Bioinformatics Infrastructure Sweden (NBIS), Scilifelab, Department of Biochemistry and Biophysics (DBB), Stockholm University, Stockholm, Sweden.
  • Capella-Gutierrez S; ELIXIR-ES, Spanish National Bioinformatics Institute (INB), Spanish National Cancer Research Centre (CNIO), Calle de Melchor Fernández Almagro 3, Madrid, 28029, Spain.
  • Chue Hong N; Software Sustainability Institute, JCMB, University of Edinburgh, Edinburgh, EH9 3FD, UK.
  • Cook M; ELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Corpas M; Repositive Ltd, Future Business Centre, Cambridge, UK.
  • Flannery M; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • Garcia L; EMBL-EBI, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Gelpí JL; Barcelona Supercomputing Center, Barcelona, 08034, Spain.
  • Gladman S; Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona, Barcelona, 08028, Spain.
  • Goble C; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • González Ferreiro M; ELIXIR-UK, Software Sustainability Institute, School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
  • Gonzalez-Beltran A; EMBL-EBI, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Griffin PC; Oxford e-Research Centre, University of Oxford, Oxford, UK.
  • Grüning B; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • Hagberg J; ELIXIR-DE and de.NBI, Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.
  • Holub P; ELIXIR-SE, National Bioinformatics Infrastructure Sweden (NBIS), Scilifelab, Department of Biochemistry and Biophysics (DBB), Stockholm University, Stockholm, Sweden.
  • Hooft R; BBMRI-ERIC, Neue Stiftingtalstraße 2/B/6, Graz, 8010, Austria.
  • Ison J; Dutch TechCenter for Life Sciences and ELIXIR-NL, Utrecht, Netherlands.
  • Katz DS; ELIXIR-DK, Technical University of Denmark, Denmark, Denmark.
  • Leskosek B; National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
  • López Gómez F; School of Information Sciences, University of Illinois Urbana Champaign, Urbana, IL, USA.
  • Oliveira LJ; Department of Electrical and Computer Engineering, University of Illinois Urbana Champaign, Urbana, IL, USA.
  • Mellor D; Department of Computer Science, University of Illinois Urbana Champaign, Urbana, IL, USA.
  • Mosbergen R; ELIXIR-SI, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.
  • Mulder N; ELIXIR Hub, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Perez-Riverol Y; DETI/IEETA, University of Aveiro, Aveiro, Portugal.
  • Pergl R; Center for Open Science, Charlottesville, VA, USA.
  • Pichler H; Stemformatics, University of Melbourne, Melbourne, Australia.
  • Pope B; Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
  • Sanz F; EMBL-EBI, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
  • Schneider MV; ELIXIR-CZ, Faculty of Information Technology, Czech Technical University in Prague, Prague, Czech Republic.
  • Stodden V; BBMRI.at, Alpen-Adria-University Klagenfurt, Klagenfurt, Austria.
  • Suchecki R; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • Svobodová Vareková R; GRIB, Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Universitat Pompeu Fabra, Barcelona, Spain.
  • Talvik HA; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • Todorov I; School of Information Sciences, University of Illinois Urbana Champaign, Urbana, IL, USA.
  • Treloar A; School of Agriculture, Food & Wine, University of Adelaide, Adelaide, Australia.
  • Tyagi S; Central European Institute of Technology (CEITEC), Brno, Czech Republic.
  • van Gompel M; National Centre for Biomolecular Research, Masaryk University, Brno, Czech Republic.
  • Vaughan D; ELIXIR-EE, Institute of Computer Science, University of Tartu, Tartu, Estonia.
  • Via A; Science & Technologies Facilities Council, Swindon, UK.
  • Wang X; Australian National Data Service, Melbourne, Australia.
  • Watson-Haigh NS; EMBL Australia Bioinformatics Resource, Lab-14, The University of Melbourne, 700 Swanston St, Parkville, Victoria, 3053, Australia.
  • Crouch S; Australian Genome Research Facility Ltd., Melbourne, Australia.
F1000Res ; 62017.
Article em En | MEDLINE | ID: mdl-28751965
Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Guideline Idioma: En Revista: F1000Res Ano de publicação: 2017 Tipo de documento: Article
Texto completo
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PubMed Links
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Guideline Idioma: En Revista: F1000Res Ano de publicação: 2017 Tipo de documento: Article