MAGNAMWAR: an R package for genome-wide association studies of bacterial orthologs.
Bioinformatics
; 34(11): 1951-1952, 2018 06 01.
Article
em En
| MEDLINE
| ID: mdl-29342236
ABSTRACT
Summary:
Here we report on an R package for genome-wide association studies of orthologous genes in bacteria. Before using the software, orthologs from bacterial genomes or metagenomes are defined using local or online implementations of OrthoMCL. These presence-absence patterns are statistically associated with variation in user-collected phenotypes using the Mono-Associated GNotobiotic Animals Metagenome-Wide Association R package (MAGNAMWAR). Genotype-phenotype associations can be performed with several different statistical tests based on the type and distribution of the data. Availability and implementation MAGNAMWAR is available on CRAN. Contact john_chaston@byu.edu.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Bactérias
/
Proteínas de Bactérias
/
Software
/
Genoma Bacteriano
/
Estudo de Associação Genômica Ampla
Tipo de estudo:
Risk_factors_studies
Limite:
Animals
Idioma:
En
Revista:
Bioinformatics
Ano de publicação:
2018
Tipo de documento:
Article