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Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach.
Stepien, Tracy L; Lynch, Holley E; Yancey, Shirley X; Dempsey, Laura; Davidson, Lance A.
Afiliação
  • Stepien TL; Department of Mathematics, University of Arizona, Tucson, AZ, United States of America.
  • Lynch HE; Department of Physics, Stetson University, DeLand, FL, United States of America.
  • Yancey SX; Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.
  • Dempsey L; Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.
  • Davidson LA; Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.
PLoS One ; 14(6): e0218021, 2019.
Article em En | MEDLINE | ID: mdl-31246967
Advanced imaging techniques generate large datasets capable of describing the structure and kinematics of tissue spreading in embryonic development, wound healing, and the progression of many diseases. These datasets can be integrated with mathematical models to infer biomechanical properties of the system, typically identifying an optimal set of parameters for an individual experiment. However, these methods offer little information on the robustness of the fit and are generally ill-suited for statistical tests of multiple experiments. To overcome this limitation and enable efficient use of large datasets in a rigorous experimental design, we use the approximate Bayesian computation rejection algorithm to construct probability density distributions that estimate model parameters for a defined theoretical model and set of experimental data. Here, we demonstrate this method with a 2D Eulerian continuum mechanical model of spreading embryonic tissue. The model is tightly integrated with quantitative image analysis of different sized embryonic tissue explants spreading on extracellular matrix (ECM) and is regulated by a small set of parameters including forces on the free edge, tissue stiffness, strength of cell-ECM adhesions, and active cell shape changes. We find statistically significant trends in key parameters that vary with initial size of the explant, e.g., for larger explants cell-ECM adhesion forces are weaker and free edge forces are stronger. Furthermore, we demonstrate that estimated parameters for one explant can be used to predict the behavior of other similarly sized explants. These predictive methods can be used to guide further experiments to better understand how collective cell migration is regulated during development.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Simulação por Computador / Processamento de Imagem Assistida por Computador / Embrião não Mamífero / Imagem com Lapso de Tempo / Modelos Biológicos Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: PLoS One Ano de publicação: 2019 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Simulação por Computador / Processamento de Imagem Assistida por Computador / Embrião não Mamífero / Imagem com Lapso de Tempo / Modelos Biológicos Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: PLoS One Ano de publicação: 2019 Tipo de documento: Article