Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in <i>Enterobacteriaceae</i> using PlasmidSPAdes assembly of short-read sequence data.

Stohr, Joep J J M; Kluytmans-van den Bergh, Marjolein F Q; Wedema, Ronald; Friedrich, Alexander W; Kluytmans, Jan A J W; Rossen, John W A

Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data.

Stohr, Joep J J M; Kluytmans-van den Bergh, Marjolein F Q; Wedema, Ronald; Friedrich, Alexander W; Kluytmans, Jan A J W; Rossen, John W A.

Afiliação

Stohr JJJM; Department of Infection Control, Amphia Hospital, Breda, The Netherlands.
Kluytmans-van den Bergh MFQ; Laboratory for Medical Microbiology and Immunology, Elisabeth-TweeSteden Hospital, Tilburg, The Netherlands.
Wedema R; Department of Infection Control, Amphia Hospital, Breda, The Netherlands.
Friedrich AW; Amphia Academy Infectious Disease Foundation, Amphia Hospital, Breda, The Netherlands.
Kluytmans JAJW; Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht, The Netherlands.
Rossen JWA; Department of Life Science and Technology, Hanze University of Applied Sciences, Groningen, The Netherlands.

Microb Genom ; 6(7)2020 07.

Article em En | MEDLINE | ID: mdl-32589571

Assuntos

Biologia Computacional/métodos; Enterobacteriaceae/genética; Plasmídeos/genética; beta-Lactamases/genética; Cromossomos Bacterianos/genética; Replicon; Software; Sequenciamento Completo do Genoma

Palavras-chave

ESBL; PlasmidSPAdes; plasmids

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Texto completo: 1 Coleções: 01-internacional Contexto em Saúde: 3_ND Base de dados: MEDLINE Assunto principal: Plasmídeos / Beta-Lactamases / Biologia Computacional / Enterobacteriaceae Tipo de estudo: Diagnostic_studies Idioma: En Revista: Microb Genom Ano de publicação: 2020 Tipo de documento: Article

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