Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities.

Beule, Lukas; Karlovsky, Petr

Beule, Lukas; Karlovsky, Petr.

Afiliação

Beule L; Molecular Phytopathology and Mycotoxin Research, Georg-August Universität Göttingen, Göttingen, Germany.
Karlovsky P; Molecular Phytopathology and Mycotoxin Research, Georg-August Universität Göttingen, Göttingen, Germany.

PeerJ ; 8: e9593, 2020.

Article em En | MEDLINE | ID: mdl-32832266

Palavras-chave

Alpha diversity; Amplicon sequencing; Beta diversity; Count data normalization; Microbiome; Rarefying; Relative abundance; Scaling with ranked subsampling (SRS); Species count

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: PeerJ Ano de publicação: 2020 Tipo de documento: Article

Texto completo

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PubMed Links

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: PeerJ Ano de publicação: 2020 Tipo de documento: Article