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Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.
Marini, Simone; Mavian, Carla; Riva, Alberto; Prosperi, Mattia; Salemi, Marco; Rife Magalis, Brittany.
Afiliação
  • Marini S; Department of Epidemiology, University of Florida, Gainesville, FL 32611, USA.
  • Mavian C; Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA.
  • Riva A; Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA.
  • Prosperi M; Department of Pathology, University of Florida, Gainesville, FL 32611, USA.
  • Salemi M; Bioinformatics Core, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32611, USA.
  • Rife Magalis B; Department of Epidemiology, University of Florida, Gainesville, FL 32611, USA.
Bioinformatics ; 38(3): 856-860, 2022 01 12.
Article em En | MEDLINE | ID: mdl-34672334
ABSTRACT

SUMMARY:

TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. AVAILABILITY AND IMPLEMENTATION TARDiS, along with example datasets and a user manual, is available at https//github.com/smarini/tardis-phylogenetics.
Assuntos
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Genoma Viral Idioma: En Revista: Bioinformatics Ano de publicação: 2022 Tipo de documento: Article
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Genoma Viral Idioma: En Revista: Bioinformatics Ano de publicação: 2022 Tipo de documento: Article