KOMB: K-core based de novo characterization of copy number variation in microbiomes.

Balaji, Advait; Sapoval, Nicolae; Seto, Charlie; Leo Elworth, R A; Fu, Yilei; Nute, Michael G; Savidge, Tor; Segarra, Santiago; Treangen, Todd J

Balaji, Advait; Sapoval, Nicolae; Seto, Charlie; Leo Elworth, R A; Fu, Yilei; Nute, Michael G; Savidge, Tor; Segarra, Santiago; Treangen, Todd J.

Afiliação

Balaji A; Department of Computer Science, Rice University, Houston, TX, USA.
Sapoval N; Department of Computer Science, Rice University, Houston, TX, USA.
Seto C; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Leo Elworth RA; Department of Computer Science, Rice University, Houston, TX, USA.
Fu Y; Department of Computer Science, Rice University, Houston, TX, USA.
Nute MG; Department of Computer Science, Rice University, Houston, TX, USA.
Savidge T; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX, USA.
Segarra S; Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA.
Treangen TJ; Department of Computer Science, Rice University, Houston, TX, USA.

Comput Struct Biotechnol J ; 20: 3208-3222, 2022.

Article em En | MEDLINE | ID: mdl-35832621

Palavras-chave

CDI, Clostridium Difficile Infection; CNV, Copy Number Variation; Copy number variation (CNV); DBG, De Bruijn Graphs; De Bruijn graph; ENA, European Nucleotide Archive; FMT, Fecal Matter Transplantation; FPR, False Positive Rate; Functional characterization; GO, Gene Ontology; GPL, (GNU) General Public License; Graph-based analysis; K-core decomposition; MAGs, Metagenome assembled genomes; Metagenome; ROC, Receiver Operating Curve; Repeats; SAM, Sequence Alignment Map; SRA, Sequence Read Archive; SVs, Structural Variants; TPR, True Positive Rate; Unitigs

Texto completo

Imprimir

XML

PubMed Links

Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Ano de publicação: 2022 Tipo de documento: Article

Texto completo

Imprimir

XML

PubMed Links

Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Ano de publicação: 2022 Tipo de documento: Article