SPREAD 4: online visualisation of pathogen phylogeographic reconstructions.
Virus Evol
; 8(2): veac088, 2022.
Article
em En
| MEDLINE
| ID: mdl-36325034
ABSTRACT
Phylogeographic analyses aim to extract information about pathogen spread from genomic data, and visualising spatio-temporal reconstructions is a key aspect of this process. Here we present SPREAD 4, a feature-rich web-based application that visualises estimates of pathogen dispersal resulting from Bayesian phylogeographic inference using BEAST on a geographic map, offering zoom-and-filter functionality and smooth animation over time. SPREAD 4 takes as input phylogenies with both discrete and continuous location annotation and offers customised visualisation as well as generation of publication-ready figures. SPREAD 4 now features account-based storage and easy sharing of visualisations by means of unique web addresses. SPREAD 4 is intuitive to use and is available online at https//spreadviz.org, with an accompanying web page containing answers to frequently asked questions at https//beast.community/spread4.
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1
Coleções:
01-internacional
Base de dados:
MEDLINE
Idioma:
En
Revista:
Virus Evol
Ano de publicação:
2022
Tipo de documento:
Article