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Diversity and Distribution Characteristics of Viruses from Soda Lakes.
ZeinEldin, Ramadan A; Ahmed, Marwa M; Hassanein, Wael S; Elshafey, Naglaa; Sofy, Ahmed R; Hamedo, Hend A; Elnosary, Mohamed E.
Afiliação
  • ZeinEldin RA; Deanship of Scientific Research, King AbdulAziz University, Jeddah 21589, Saudi Arabia.
  • Ahmed MM; Faculty of Graduate Studies for Statistical Research, Cairo University, Giza 12613, Egypt.
  • Hassanein WS; Department of Electrical and Computer Engineering, Faculty of Engineering-Girls Campus, King Abdulaziz University, Jeddah 80204, Saudi Arabia.
  • Elshafey N; Department of Industrial Engineering, Faculty of Engineering, King Abdulaziz University, Jeddah 80204, Saudi Arabia.
  • Sofy AR; Botany and Microbiology Department, Faculty of Science, Arish University, Al-Arish 45511, Egypt.
  • Hamedo HA; Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt.
  • Elnosary ME; Botany and Microbiology Department, Faculty of Science, Arish University, Al-Arish 45511, Egypt.
Genes (Basel) ; 14(2)2023 01 26.
Article em En | MEDLINE | ID: mdl-36833250
Viruses are the most abundant living things and a source of genetic variation. Despite recent research, we know little about their biodiversity and geographic distribution. We used different bioinformatics tools, MG-RAST, genome detective web tools, and GenomeVx, to describe the first metagenomic examination of haloviruses in Wadi Al-Natrun. The discovered viromes had remarkably different taxonomic compositions. Most sequences were derived from double-stranded DNA viruses, especially from Myoviridae, Podoviridae, Siphoviridae, Herpesviridae, Bicaudaviridae, and Phycodnaviridae families; single-stranded DNA viruses, especially from the family Microviridae; and positive-strand RNA viruses, especially from the family Potyviridae. Additionally, our results showed that Myohalovirus chaoS9 has eight Contigs and is annotated to 18 proteins as follows: tail sheath protein, tco, nep, five uncharacterized proteins, HCO, major capsid protein, putative pro head protease protein, putative head assembly protein, CxxC motive protein, terl, HTH domain protein, and terS Exon 2. Additionally, Halorubrum phage CGphi46 has 19 proteins in the brine sample as follows: portal protein, 17 hypothetical proteins, major capsid protein, etc. This study reveals viral lineages, suggesting the Virus's global dispersal more than other microorganisms. Our study clarifies how viral communities are connected and how the global environment changes.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vírus / Siphoviridae Limite: Humans Idioma: En Revista: Genes (Basel) Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vírus / Siphoviridae Limite: Humans Idioma: En Revista: Genes (Basel) Ano de publicação: 2023 Tipo de documento: Article