Improved haplotype resolution of highly duplicated MHC genes in a long-read genome assembly using MiSeq amplicons.

Mellinger, Samantha; Stervander, Martin; Lundberg, Max; Drews, Anna; Westerdahl, Helena

Mellinger, Samantha; Stervander, Martin; Lundberg, Max; Drews, Anna; Westerdahl, Helena.

Afiliação

Mellinger S; Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Lund, Sweden.
Stervander M; Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Lund, Sweden.
Lundberg M; Department of Biology and Environmental Science, Faculty of Health and Life Sciences, Linnaeus University, Kalmar, Sweden.
Drews A; Bird Group, Natural History Museum, Tring, Hertfordshire, United Kingdom.
Westerdahl H; Department of Biology, Molecular Ecology and Evolution Lab, Lund University, Lund, Sweden.

PeerJ ; 11: e15480, 2023.

Article em En | MEDLINE | ID: mdl-37456901

Assuntos

Complexo Principal de Histocompatibilidade; Passeriformes; Animais; Haplótipos/genética; Complexo Principal de Histocompatibilidade/genética; Antígenos de Histocompatibilidade Classe I/genética; Genoma; Genômica; Passeriformes/genética

Palavras-chave

Amplicon sequencing; Copy number variation; Family; Haploid genome assembly; Linkage analysis; MHC diversity; Major histocompatibility complex

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Passeriformes / Complexo Principal de Histocompatibilidade Limite: Animals Idioma: En Revista: PeerJ Ano de publicação: 2023 Tipo de documento: Article

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