Chromosome level genome assembly of oriental armyworm Mythimna separata.

Xu, Chao; Ji, Jichao; Zhu, Xiangzhen; Huangfu, Ningbo; Xue, Hui; Wang, Li; Zhang, Kaixin; Li, Dongyang; Niu, Lin; Chen, Ran; Gao, Xueke; Luo, Junyu; Cui, Jinjie

Xu, Chao; Ji, Jichao; Zhu, Xiangzhen; Huangfu, Ningbo; Xue, Hui; Wang, Li; Zhang, Kaixin; Li, Dongyang; Niu, Lin; Chen, Ran; Gao, Xueke; Luo, Junyu; Cui, Jinjie.

Afiliação

Xu C; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Ji J; Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
Zhu X; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China. hnnydxjc@163.com.
Huangfu N; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China. hnnydxjc@163.com.
Xue H; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, China. hnnydxjc@163.com.
Wang L; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Zhang K; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Li D; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, 831100, China.
Niu L; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Chen R; Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
Gao X; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.
Luo J; Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
Cui J; National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, Henan, China.

Sci Data ; 10(1): 597, 2023 09 08.

Article em En | MEDLINE | ID: mdl-37684242

ABSTRACT

ABSTRACT

The oriental armyworm, Mythimna separata, is an extremely destructive polyphagous pest with a broad host range that seriously threatens the safety of agricultural production. Here, a high-quality chromosome-level genome was assembled using Illumina, PacBio HiFi long sequencing, and Hi-C scaffolding technologies. The genome size was 706.30 Mb with a contig N50 of 22.08 Mb, and 99.2% of the assembled sequences were anchored to 31 chromosomes. In addition, 20,375 protein-coding genes and 258.68 Mb transposable elements were identified. The chromosome-level genome assembly of M. separata provides a significant genetic resource for future studies of this insect and contributes to the development of management strategies.

Assuntos

Elementos de DNA Transponíveis; Genoma de Inseto; Spodoptera; Animais; Agricultura; Spodoptera/genética

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Elementos de DNA Transponíveis / Spodoptera / Genoma de Inseto Limite: Animals Idioma: En Revista: Sci Data Ano de publicação: 2023 Tipo de documento: Article

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