scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.

Akhtyamov, Pavel; Shaheen, Layal; Raevskiy, Mikhail; Stupnikov, Alexey; Medvedeva, Yulia A

Akhtyamov, Pavel; Shaheen, Layal; Raevskiy, Mikhail; Stupnikov, Alexey; Medvedeva, Yulia A.

Afiliação

Akhtyamov P; Department of Biomedical Physics, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., 141701, Moscow Region, Russian Federation.
Shaheen L; The National Medical Research Center for Endocrinology, Dm. Ulyanova, 11, 117036, Moscow, Russian Federation.
Raevskiy M; Department of Biomedical Physics, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., 141701, Moscow Region, Russian Federation.
Stupnikov A; The National Medical Research Center for Endocrinology, Dm. Ulyanova, 11, 117036, Moscow, Russian Federation.
Medvedeva YA; Department, École Polytechnique Fédérale de Lausanne, Rte Cantonale, 1015, Lausanne, Vaud, Switzerland.

Brief Bioinform ; 25(1)2023 11 22.

Article em En | MEDLINE | ID: mdl-38084919

Assuntos

Epigênese Genética; Genômica; Genômica/métodos; Fatores de Transcrição/genética; Fatores de Transcrição/metabolismo; Regulação da Expressão Gênica; Análise por Conglomerados

Palavras-chave

digital footprinting; imputation; preprocessing; scATAC-seq; single cell

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genômica / Epigênese Genética Idioma: En Revista: Brief Bioinform Ano de publicação: 2023 Tipo de documento: Article

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