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Chromosome-level genome assembly and annotation of the cold-water species Ophiura sarsii.
Han, Chen; Zhang, Qian; Li, Yixuan; Sun, Yuyao; Dong, Yue; Ge, Meiling; Li, Zhong; Hu, Xuying; Liu, Bing; Zhang, Xuelei; Wang, Zongling; Xu, Qinzeng.
Afiliação
  • Han C; School of Ocean Sciences, China University of Geosciences, Beijing, 100083, China.
  • Zhang Q; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Li Y; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Sun Y; Faculty of Science, Hong Kong Baptist University, Hong Kong, 000000, China.
  • Dong Y; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Ge M; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Li Z; College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China.
  • Hu X; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Liu B; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Zhang X; College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China.
  • Wang Z; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
  • Xu Q; Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061, China.
Sci Data ; 11(1): 560, 2024 May 30.
Article em En | MEDLINE | ID: mdl-38816401
ABSTRACT
The cold-water species Ophiura sarsii, a brittle star, is a key echinoderm in the Arctic continental shelf region, highly sensitive to climate change. However, the absence of a high-quality genome has hindered a thorough understanding of its adaptive evolution. In this study, we reported the first chromosome-level genome assembly of O. sarsii. The genome assembly totalled 1.57 Gb, encompassing 19 chromosomes with a GC content of 37.11% and a scaffold N50 length of 78.03 Mb. The Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment yielded a completeness estimate of 93.5% for this assembly. We predicted a total of 27,099 protein-coding genes, with 25,079 functionally annotated. The genome was comprised of 58.09% transposable elements. This chromosome-level genome of O. sarsii contributes to our understanding of the origin and evolution of marine organisms.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Cromossomos / Genoma / Equinodermos Limite: Animals Idioma: En Revista: Sci Data Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Cromossomos / Genoma / Equinodermos Limite: Animals Idioma: En Revista: Sci Data Ano de publicação: 2024 Tipo de documento: Article