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A foundation model for clinical-grade computational pathology and rare cancers detection.
Vorontsov, Eugene; Bozkurt, Alican; Casson, Adam; Shaikovski, George; Zelechowski, Michal; Severson, Kristen; Zimmermann, Eric; Hall, James; Tenenholtz, Neil; Fusi, Nicolo; Yang, Ellen; Mathieu, Philippe; van Eck, Alexander; Lee, Donghun; Viret, Julian; Robert, Eric; Wang, Yi Kan; Kunz, Jeremy D; Lee, Matthew C H; Bernhard, Jan H; Godrich, Ran A; Oakley, Gerard; Millar, Ewan; Hanna, Matthew; Wen, Hannah; Retamero, Juan A; Moye, William A; Yousfi, Razik; Kanan, Christopher; Klimstra, David S; Rothrock, Brandon; Liu, Siqi; Fuchs, Thomas J.
Afiliação
  • Vorontsov E; Paige, New York, NY, US.
  • Bozkurt A; Paige, New York, NY, US.
  • Casson A; Paige, New York, NY, US.
  • Shaikovski G; Paige, New York, NY, US.
  • Zelechowski M; Paige, New York, NY, US.
  • Severson K; Microsoft Research, Cambridge, MA, US.
  • Zimmermann E; Microsoft Research, Cambridge, MA, US.
  • Hall J; Microsoft Research, Cambridge, MA, US.
  • Tenenholtz N; Microsoft Research, Cambridge, MA, US.
  • Fusi N; Microsoft Research, Cambridge, MA, US.
  • Yang E; Memorial Sloan Kettering Cancer Center, New York, NY, US.
  • Mathieu P; Paige, New York, NY, US.
  • van Eck A; Paige, New York, NY, US.
  • Lee D; Paige, New York, NY, US.
  • Viret J; Paige, New York, NY, US.
  • Robert E; Paige, New York, NY, US.
  • Wang YK; Paige, New York, NY, US.
  • Kunz JD; Paige, New York, NY, US.
  • Lee MCH; Paige, New York, NY, US.
  • Bernhard JH; Paige, New York, NY, US.
  • Godrich RA; Paige, New York, NY, US.
  • Oakley G; Paige, New York, NY, US.
  • Millar E; NSW Health Pathology, St George Hospital, Sydney, New South Wales, Australia.
  • Hanna M; Memorial Sloan Kettering Cancer Center, New York, NY, US.
  • Wen H; Memorial Sloan Kettering Cancer Center, New York, NY, US.
  • Retamero JA; Paige, New York, NY, US.
  • Moye WA; Paige, New York, NY, US.
  • Yousfi R; Paige, New York, NY, US.
  • Kanan C; Paige, New York, NY, US.
  • Klimstra DS; University of Rochester, Rochester, NY, US.
  • Rothrock B; Paige, New York, NY, US.
  • Liu S; Paige, New York, NY, US.
  • Fuchs TJ; Paige, New York, NY, US. siqi.liu@paige.ai.
Nat Med ; 2024 Jul 22.
Article em En | MEDLINE | ID: mdl-39039250
ABSTRACT
The analysis of histopathology images with artificial intelligence aims to enable clinical decision support systems and precision medicine. The success of such applications depends on the ability to model the diverse patterns observed in pathology images. To this end, we present Virchow, the largest foundation model for computational pathology to date. In addition to the evaluation of biomarker prediction and cell identification, we demonstrate that a large foundation model enables pan-cancer detection, achieving 0.95 specimen-level area under the (receiver operating characteristic) curve across nine common and seven rare cancers. Furthermore, we show that with less training data, the pan-cancer detector built on Virchow can achieve similar performance to tissue-specific clinical-grade models in production and outperform them on some rare variants of cancer. Virchow's performance gains highlight the value of a foundation model and open possibilities for many high-impact applications with limited amounts of labeled training data.

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Nat Med Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Nat Med Ano de publicação: 2024 Tipo de documento: Article