Phenotypic and molecular characterization of fluoroquinolone resistant Pseudomonas aeruginosa isolates in Palestine / Caracterização fenotípica e molecular de isolados de Pseudomonas aeruginosa resistentes a fluoroquinolonas na Palestina

Fluoroquinolones are important antimicrobial agents for the treatment of Pseudomonas infections. A total of 11 isolates of P. aeruginosa were collected from different clinical samples from different medical centers in the North West Bank-Palestine during 2017. In this study, resistance to fluoroquinolones and secretions of ß-lactamases were detected by phenotypic methods, while presence of ß-lactamase gene sequences and other virulence factors were detected by PCR technique. PCR product for gyrA, parC and parE genes were sequenced for further analyses. The phylogenetic analyses, population diversity indices and haplotypes determination were conducted using computer programs MEGA version 6, DnaSP 5.1001 and median-joining algorithm in the program Network 5, respectively. Results of this study showed that the MIC for ciprofloxacin and norfloxacin had a range of 32-256 µg/ml. In addition, all isolates carried either exoT or exoT and exoY genes, different ß-lactamase genes and 82% of these isolates harbored class 1 integrons. Analyses of the gyrA, parC and parE sequences were found to be polymorphic, had high haplotype diversity (0.945-0.982), low nucleotide diversity (0.01225-0.02001) and number of haplotypes were 9 for each gyrA and parE genes and 10 haplotypes for parC gene. The founder haplotypes being Hap-1 (18%), Hap-2 (27.3%) and Hap-6 (9.1%) for gyrA, parC and parE genes, respectively. Two of ParE haplotypes were detected as indel haplotypes. The Median-joining- (MJ) networks constructed from haplotypes of these genes showed a star-like expansion. The neutrality tests (Tajima's D test and Fu's Fs test) for these genes showed negative values. Palestinian fluoroquinolone resistant P. aeruginosa strains showed high MIC level for fluoroquinolones, ß-lactamase producers, carried type III secretion exotoxin-encoding genes, most of them had integrase I gene and had high level of mutations in QRDR regions in gyrA, parC and parE genes. All these factors may play an important role in the invasiveness of these strains and make them difficult to treat. Isolation of these strains from different medical centers, indicate the need for a strict application of infection control measures in Medical centers in the North West Bank-Palestine that aim to reduce expense and damage caused by P. aeruginosa infections. Molecular analyses showed that Palestinian fluoroquinolone resistant P. aeruginosa haplotypes are not genetically differentiated; however, more mutations may exist in these strains.

Fluoroquinolonas são agentes antimicrobianos importantes para o tratamento de infecções por Pseudomonas. Um total de 11 bacilos isolados de P. aeruginosa foram coletados de diferentes amostras clínicas provenientes de diferentes centros médicos na Cisjordânia-Palestina durante o ano de 2017. Neste estudo, resistência a fluoroquinolonas e secreções de ß-lactamases foram detectadas por métodos fenotípicos, enquanto a presença de sequências do gene ß-lactamase e outros fatores de virulência foram detectados pela técnica de PCR (Proteína C-reativa). O produto de PCR para os genes gyrA, parC e parE foram sequenciados para análises posteriores. As análises filogenéticas, os índices de diversidade populacional e a determinação de haplótipos foram realizados utilizando os softwares MEGA versão 6, DnaSP 5.1001 e o algoritmo de junção de mediana do programa Network 5, respectivamente. Os resultados deste estudo mostraram que a MIC para ciprofloxacina e norfloxacina tinha um intervalo de 32-256 µg/ml. Além disso, todos os bacilos isolados carregavam genes exoT ou exoT e exoY, genes de ß-lactamase diferentes e 82% desses isolados continham integrons de classe 1. As análises das sequências gyrA, parC e parE foram consideradas polimórficas, com alta diversidade de haplótipos (0,945-0,982), baixa diversidade de nucleotídeos (0,01225-0,02001) e o número de haplótipos foi de 9 para cada gene de gyrA e parE e 10 haplótipos para o gene parC. Os haplótipos fundadores são Hap-1 (18%), Hap-2 (27,3%) e Hap-6 (9,1%) para os genes gyrA, parC e parE, respectivamente. Dois dos haplótipos parE foram detectados como haplótipos InDel. As redes Median-joining (MJ) construídas a partir de haplótipos desses genes mostraram uma expansão semelhante à de uma estrela. Os testes de neutralidade (teste D de Tajima e teste Fs de Fu) para esses genes apresentaram valores negativos. As cepas palestinas de P. aeruginosa resistentes a fluoroquinolonas mostraram alto nível de MIC para fluoroquinolonas, produtores de ß-lactamase, genes codificadores de exotoxina de secreção tipo III, a maioria deles tinha o gene integrase I e tinha alto nível de mutações nas regiões QRDR nos genes gyrA, parC e parE. Todos esses fatores podem desempenhar um papel importante na invasão dessas cepas e torná-las difíceis de tratar. O isolamento dessas cepas em diferentes centros médicos, indica a necessidade de uma aplicação estrita de medidas de controle de infecção em centros médicos da Cisjordânia-Palestina que visam reduzir despesas e danos causados por infecções por P. aeruginosa. As análises moleculares mostraram que os haplótipos de P. aeruginosa resistentes à fluoroquinolona palestina não são geneticamente diferenciados; no entanto, mais mutações podem existir nessas cepas.

Presença da mutação do gene BRCA1 em cadelas com tumores mamários malignos / Presence of BRCA1 gene mutation in bitches with malignant mammary tumors

Mammary tumors (MTs) in bitches are similar to breast cancers in women. Thus, they can be used as a model for human breast cancer and findings can be extrapolated for use in human medicine. BRCA1 is a tumor suppressor gene. When the gene has a mutation, it cannot repair damaged DNA, which causes genetic instability and tumorigenesis. Therefore, we aimed to study the frequency of single nucleotide polymorphisms (SNPs) in the BRCA1 gene that are associated with distinct histological types of malignant MT in bitches. The study population consisted of 91 bitches, including a control group of 6 animals with healthy mammary glands and 85 animals with MTs. All animals underwent a presurgery evaluation consisting of a questionnaire administered to the person responsible for the animal, a physical examination, collection of peripheral blood for hematological and serum biochemistry evaluations, an electrocardiogram, and a preanesthesia evaluation. In addition, distant metastasis was studied via chest radiography and abdominal ultrasound. After evaluations were complete, the animals that could undergo surgery were administered general anesthesia and underwent a mastectomy or mammary gland sample collection. Histopathological examination and molecular analysis were performed to identify mutations in the BRCA1 gene. Histopathological examinations found 10 different types of malignant tumors in 36 sick animals. Tumor samples plus samples from the 6 control animals were subjected to DNA extraction, polymerase chain reaction (PCR) analysis, and genetic sequencing. The tumor with the highest incidence (33.33%) was a complex carcinoma, followed by carcinoma in mixed tumor (13.88), tubular carcinoma (13.88) and carcinosarcoma (13.88). Molecular analysis revealed 3 different SNP points in 5 samples (4006G>A, 3619A>G, and 3761C>T). The allelic variant 4006G>A (1/36) resulted in the alteration of the amino acid valine by isoleucine (V1336 I). The mutation 3619A>G (2/36) inserted the amino acid alanine instead of threonine (T1207 A). The mutation 3761C>T (2/36) led to the alteration of the amino acid serine by phenylalanine (S1254 F), a mutation for which there are no published reports. The histological types that showed BRCA1 mutations were complex carcinoma (1/5), carcinoma in mixed tumor (1/5), papillary carcinoma (1/5) and tubular carcinoma (2/5). Software analysis identified the new SNP (nucleotide 3761) in BRCA1 and 2 point mutations in nucleotides 4006 and 3619 and responsible for genetic instability. The development of breast cancer is caused by many endogenous and exogenous factors. The results of our study show that these factors have a greater presence in female, mixed breed, uncastrated, and older dogs, confirming the data in the veterinary literature. In the present study, we found different histological types of malignant breast tumors with mutations in the BRCA1 gene, as other authors have reported. However, we also found the mutation 3761C>T, which, to the best of our knowledge, has not been reported in the literature. This shows the need for studies in veterinary medicine that assess mutations in the BRCA1 gene and the most common histological types. In conclusion, SNPs in the BRCA1 gene cause genetic instability, resulting in additional mutations that lead to the development of breast tumors. They are point mutations that affect transcription, resulting in truncated proteins. These proteins may have a loss of function, leading to carcinogenesis.(AU)

Prevalence of autosomal dominant polycystic kidney disease in Persian and Persian-related cats in Brazil / Prevalência da doença renal policística autossômica dominante em gatos Persas e raças relacionadas no Brasil

Autosomal dominant polycystic kidney disease (ADPKD) is the most common genetic disease in cats. However, scarce data on its prevalence are available in Brazil. Persian cats and Persian-related breeds were assessed by molecular genotyping for a C to A transversion in exon 29 of PKD1 gene to determine ADPKD prevalence in a Brazilian population. Genomic DNA extracted from peripheral whole blood or oral swabs samples was used to amplify exon 29 of PKD1 gene employing a PCR-RFLP methodology. From a total of 616 animals, 27/537 Persian and 1/17 Himalayan cats showed the single-nucleotide variant (C to A) at position 3284 in exon 29 of feline PKD1. This pathogenic variation has been identified only in heterozygous state. The prevalence of ADPKD in Persian cats and Persian-related breeds was 5.03% and 1.6%, respectively. There was no significant association between feline breed, gender or age with ADPKD prevalence. Of note, the observed ADPKD prevalence in Persian cats and Persian-related breeds in Brazil was lower than the ones reported in other parts of the world. This finding may be related to genetic counseling and consequent selection of ADPKD-free cats for reproduction.

A doença renal policística autossômica dominante (DRPAD) é a doença genética mais comum em gatos. No entanto, poucos dados sobre sua prevalência estão disponíveis no Brasil. Gatos Persas e de raças relacionadas foram avaliados por genotipagem molecular para a transversão C→A no exon 29 do gene PKD1 felino para determinar a prevalência de DRPAD. DNA genômico extraído de sangue total periférico ou amostras de swabs orais foram utilizados para amplificar o exon 29 do gene PKD1 pela técnica de PCR-RFLP. De um total de 616 gatos, 27/537 Persas e 1/17 Himalaia mostraram a variante de nucleotídeo único (C→A) na posição 3284 no exon 29 do gene PKD1. Esta variante patogênica foi identificada apenas em heterozigose. A prevalência de DRPAD em gatos Persas e raças relacionadas foram de 5,03% e 1,6%, respectivamente. Não houve associações significativas entre raça, gênero ou idade dos felinos e incidência de DRPAD. A prevalência de DRPAD em gatos Persas e raças relacionadas no Brasil foi menor do que em outras partes do mundo, o que pode estar relacionado ao aconselhamento genético e consequente seleção de gatos sem ADPKD para reprodução.

ACCase-inhibiting herbicides: mechanism of action, resistance evolution and stewardship

Herbicides play an important role in preventing crop yield losses due to both their weed interference ability and their capacity for increasing soil conservation in no-till systems. Group A herbicides or acetyl-CoA carboxylase (ACCase) are essential tools the selective management of glyphosate resistance in grass weed species. In this review, we describe important aspects of ACCase biology and herbicides targeting this enzyme, along with a discussion on stewardship programs to delay the evolution of herbicide resistance which can evolve either through target site and/or non-target site mechanisms. Sixteen-point mutations have been reported to confer resistance to ACCase inhibitors. Each mutation confers cross resistance to a different group of herbicides. Metabolic resistance can result in resistance to multiple herbicides with different mechanisms of action (MoA), and herbicide detoxification is often conferred by cytochrome P450 monooxigenases and glutathione- S -transferases. Regardless of whether resistance mechanisms are target or non-target site, using herbicides with the same MoA will result in resistance evolution. Therefore, while field surveys and resistance mechanism studies are crucial for designing reactive management strategies, integrated weed management plays a central role in both reactive and proactive mitigation of herbicide resistance evolution.(AU)

ACCase-inhibiting herbicides: mechanism of action, resistance evolution and stewardship

Herbicides play an important role in preventing crop yield losses due to both their weed interference ability and their capacity for increasing soil conservation in no-till systems. Group A herbicides or acetyl-CoA carboxylase (ACCase) are essential tools the selective management of glyphosate resistance in grass weed species. In this review, we describe important aspects of ACCase biology and herbicides targeting this enzyme, along with a discussion on stewardship programs to delay the evolution of herbicide resistance which can evolve either through target site and/or non-target site mechanisms. Sixteen-point mutations have been reported to confer resistance to ACCase inhibitors. Each mutation confers cross resistance to a different group of herbicides. Metabolic resistance can result in resistance to multiple herbicides with different mechanisms of action (MoA), and herbicide detoxification is often conferred by cytochrome P450 monooxigenases and glutathione- S -transferases. Regardless of whether resistance mechanisms are target or non-target site, using herbicides with the same MoA will result in resistance evolution. Therefore, while field surveys and resistance mechanism studies are crucial for designing reactive management strategies, integrated weed management plays a central role in both reactive and proactive mitigation of herbicide resistance evolution.

Quinolones resistance in Salmonella spp. isolated from broilers and chickens carcasses under federal inspection

ABSTRACT: We analyzed 77 Salmonella spp. strains, from which 20 were isolated from broilers (cloacal swabs) and 57 from chickens from slaughterhouses under federal inspection. The following serotypes were identified: Salmonella Saint Paul (29), Salmonella Heidelberg (27), Salmonella Anatum (9), Salmonella Cerro (5), Salmonella Senftenberg (5), Salmonella enterica (O: 4,5) (1) and Salmonella enterica (O: 9.12) (1). Fifteen strains (19.5%) were resistant to enrofloxacin, six (7.8%) to ciprofloxacin, and 26 (33.8%) to nalidixic acid in the Disk Diffusion Test. The fifteen enrofloxacin resistant strains were selected for the PCR to detect the genes gyrA, gyrB, parC, and parE, and genetic sequencing to identify mutations in these genes. Five strains (33.3%) had point mutations in the gyrA gene, and one (6.7%) presented a point mutation in the parC gene. None of the 15 strains had mutations in the gyrB and parE genes, and none had more than one mutation in the gyrA gene or the other genes. The presence of point mutations in the strains studied corroborates with the phenotypic resistance observed to nalidixic acid. However, it did not explain the resistance to fluoroquinolones found in the 15 strains. Other mechanisms may be related to the fluoroquinolones resistance, highlighting the need for additional mutation screening.

RESUMO: Foram analisadas neste estudo 77 estirpes de Salmonella spp., 20 isoladas de frangos vivos (suabes de cloaca) e 57 isoladas de carcaças, provenientes de abatedouros frigoríficos sob Inspeção Federal. Foram identificados os seguintes sorotipos: Salmonella Saint Paul (29), Salmonella Heidelberg (27), Salmonella Anatum (9), Salmonella Cerro (5), Salmonella Senftenberg (5), Salmonella enterica (O: 4,5) (1) e Salmonella enterica (O: 9,12) (1). Do total de estirpes estudadas, 15 (19,5%) se mostraram resistentes à enrofloxacina, seis (7,8%) à ciprofloxacina e 26 (33,8%) ao ácido nalidíxico no Teste de Difusão em Disco. Foram selecionadas as 15 estirpes resistentes à enrofloxacina para a realização da PCR para detecção dos genes gyrA, gyrB, parC e parEe para sequenciamento genético do produto da PCR para identificação de mutações nesses genes. Cinco estirpes (33,3%) apresentaram mutações pontuais no gene gyrA e uma (6,7%) apresentou mutação pontual no gene parC. Nenhuma das 15 estirpes apresentou mutações nos genes gyrB e parE e nenhuma apresentou mais de uma mutação no gene gyrA ou nos outros genes. A existência apenas de mutações pontuais em alguns genes das estirpes analisadas está de acordo com a resistência fenotípica observada ao ácido nalidíxico, mas não explica a resistência às fluoroquinolonas encontrada nas 15 estirpes. Outros mecanismos de resistência podem estar relacionados à resistência encontrada às fluoroquinolonas e estudos adicionais são necessários para investigar sua presença.

Quinolones resistance in Salmonella spp. isolated from broilers and chickens carcasses under federal inspection / Resistência à quinolonas em Salmonella spp. isoladas de frangos vivos e carcaças sob inspeção federal

We analyzed 77 Salmonella spp. strains, from which 20 were isolated from broilers (cloacal swabs) and 57 from chickens from slaughterhouses under federal inspection. The following serotypes were identified: Salmonella Saint Paul (29), Salmonella Heidelberg (27), Salmonella Anatum (9), Salmonella Cerro (5), Salmonella Senftenberg (5), Salmonella enterica (O: 4,5) (1) and Salmonella enterica (O: 9.12) (1). Fifteen strains (19.5%) were resistant to enrofloxacin, six (7.8%) to ciprofloxacin, and 26 (33.8%) to nalidixic acid in the Disk Diffusion Test. The fifteen enrofloxacin resistant strains were selected for the PCR to detect the genes gyrA, gyrB, parC, and parE, and genetic sequencing to identify mutations in these genes. Five strains (33.3%) had point mutations in the gyrA gene, and one (6.7%) presented a point mutation in the parC gene. None of the 15 strains had mutations in the gyrB and parE genes, and none had more than one mutation in the gyrA gene or the other genes. The presence of point mutations in the strains studied corroborates with the phenotypic resistance observed to nalidixic acid. However, it did not explain the resistance to fluoroquinolones found in the 15 strains. Other mechanisms may be related to the fluoroquinolones resistance, highlighting the need for additional mutation screening.(AU)

Foram analisadas neste estudo 77 estirpes de Salmonella spp., 20 isoladas de frangos vivos (suabes de cloaca) e 57 isoladas de carcaças, provenientes de abatedouros frigoríficos sob Inspeção Federal. Foram identificados os seguintes sorotipos: Salmonella Saint Paul (29), Salmonella Heidelberg (27), Salmonella Anatum (9), Salmonella Cerro (5), Salmonella Senftenberg (5), Salmonella enterica (O: 4,5) (1) e Salmonella enterica (O: 9,12) (1). Do total de estirpes estudadas, 15 (19,5%) se mostraram resistentes à enrofloxacina, seis (7,8%) à ciprofloxacina e 26 (33,8%) ao ácido nalidíxico no Teste de Difusão em Disco. Foram selecionadas as 15 estirpes resistentes à enrofloxacina para a realização da PCR para detecção dos genes gyrA, gyrB, parC e parEe para sequenciamento genético do produto da PCR para identificação de mutações nesses genes. Cinco estirpes (33,3%) apresentaram mutações pontuais no gene gyrA e uma (6,7%) apresentou mutação pontual no gene parC. Nenhuma das 15 estirpes apresentou mutações nos genes gyrB e parE e nenhuma apresentou mais de uma mutação no gene gyrA ou nos outros genes. A existência apenas de mutações pontuais em alguns genes das estirpes analisadas está de acordo com a resistência fenotípica observada ao ácido nalidíxico, mas não explica a resistência às fluoroquinolonas encontrada nas 15 estirpes. Outros mecanismos de resistência podem estar relacionados à resistência encontrada às fluoroquinolonas e estudos adicionais são necessários para investigar sua presença.(AU)

Comparison of Some Biomechanical Properties of Tibiotarsus in Four Different Feather Color Lines of 60-Day Old Female Quails

This study aimed to compare some morphological and mechanical measurements of four different color female quails to contribute to the formation of the morphological database. Quails are the smallest farmed avian species which are becoming more important for the poultry industry. They are also used as experimental animals and are valuable birds for researches. Genetic factors are important determinants of bone strength. Thus, skeletal disorders may be reduced by breeding selection in quails. Forty female quails with four different feather colors, including wild, white, yellow, and black, were compared at 60 days of age. Each quail group contained ten individuals. A three-point bending test was performed with a custom-made testing machine designed for low strength materials. No significant difference was found between the groups in terms of body weight. The tibiotarsus weight in wild and black (0,665±0,055g and 0,687±0,025g, respectively) was significantly lower than in the others but, the significant highest value was in white quails (0,758±0,063g) (p=0.001). Significantly shorter tibiotarsus was observed in the black quails (51,286±1,374mm), while the tibiotarsi of the white and yellow quails were the tallest (53,216±1,796mm and 53,083±1,092mm, respectively) (p=0.005). There were no significant differences among the groups in the biomechanical properties of tibiotarsus, except stiffness. Stiffness was the highest in the white quails (109,500±3,807 N/mm) and the lowest in the black quails (99,000±9,498 N/mm) (p=0.042). In conclusion, white quails have been observed to have relatively better bone biomechanical properties compared to the other color groups at 60 days of age.(AU)

Comparison of Some Biomechanical Properties of Tibiotarsus in Four Different Feather Color Lines of 60-Day Old Female Quails

This study aimed to compare some morphological and mechanical measurements of four different color female quails to contribute to the formation of the morphological database. Quails are the smallest farmed avian species which are becoming more important for the poultry industry. They are also used as experimental animals and are valuable birds for researches. Genetic factors are important determinants of bone strength. Thus, skeletal disorders may be reduced by breeding selection in quails. Forty female quails with four different feather colors, including wild, white, yellow, and black, were compared at 60 days of age. Each quail group contained ten individuals. A three-point bending test was performed with a custom-made testing machine designed for low strength materials. No significant difference was found between the groups in terms of body weight. The tibiotarsus weight in wild and black (0,665±0,055g and 0,687±0,025g, respectively) was significantly lower than in the others but, the significant highest value was in white quails (0,758±0,063g) (p=0.001). Significantly shorter tibiotarsus was observed in the black quails (51,286±1,374mm), while the tibiotarsi of the white and yellow quails were the tallest (53,216±1,796mm and 53,083±1,092mm, respectively) (p=0.005). There were no significant differences among the groups in the biomechanical properties of tibiotarsus, except stiffness. Stiffness was the highest in the white quails (109,500±3,807 N/mm) and the lowest in the black quails (99,000±9,498 N/mm) (p=0.042). In conclusion, white quails have been observed to have relatively better bone biomechanical properties compared to the other color groups at 60 days of age.

Heterologous expression and mutagenesis of recombinant Vespa affinis hyaluronidase protein (rVesA2)

Background:Crude venom of the banded tiger waspVespa affinis contains a variety of enzymes including hyaluronidases, commonly known as spreading factors.Methods:The cDNA cloning, sequence analysis and structural modelling of V. affinis venom hyaluronidase (VesA2) were herein described. Moreover, heterologous expression and mutagenesis of rVesA2 were performed.Results:V. affinis venom hyaluronidase full sequence is composed of 331 amino acids, with four predicted N-glycosylation sites. It was classified into the glycoside hydrolase family 56. The homology modelling exhibited a central core (α/β)7 composed of Asp107 and Glu109, acting as the catalytic residues. The recombinant protein was successfully expressed in E. coli with hyaluronidase activity. A recombinant mutant type with the double point mutation, Asp107Asn and Glu109Gln, completely lost this activity. The hyaluronidase from crude venom exhibited activity from pH 2 to 7. The recombinant wild type showed its maximal activity at pH 2 but decreased rapidly to nearly zero at pH 3 and was completely lost at pH 4.Conclusion:The recombinant wild-type protein showed its maximal activity at pH 2, more acidic pH than that found in the crude venom. The glycosylation was predicted to be responsible for the pH optimum and thermal stability of the enzymes activity.(AU)

Heterologous expression and mutagenesis of recombinant Vespa affinis hyaluronidase protein (rVesA2)

Background:Crude venom of the banded tiger waspVespa affinis contains a variety of enzymes including hyaluronidases, commonly known as spreading factors.Methods:The cDNA cloning, sequence analysis and structural modelling of V. affinis venom hyaluronidase (VesA2) were herein described. Moreover, heterologous expression and mutagenesis of rVesA2 were performed.Results:V. affinis venom hyaluronidase full sequence is composed of 331 amino acids, with four predicted N-glycosylation sites. It was classified into the glycoside hydrolase family 56. The homology modelling exhibited a central core (α/β)7 composed of Asp107 and Glu109, acting as the catalytic residues. The recombinant protein was successfully expressed in E. coli with hyaluronidase activity. A recombinant mutant type with the double point mutation, Asp107Asn and Glu109Gln, completely lost this activity. The hyaluronidase from crude venom exhibited activity from pH 2 to 7. The recombinant wild type showed its maximal activity at pH 2 but decreased rapidly to nearly zero at pH 3 and was completely lost at pH 4.Conclusion:The recombinant wild-type protein showed its maximal activity at pH 2, more acidic pH than that found in the crude venom. The glycosylation was predicted to be responsible for the pH optimum and thermal stability of the enzymes activity.

Alternative Transcription of Peroxisome Proliferator-Activated Receptor Gamma in the Liver Is Associated with Fatness of Chickens

ABSTRACT The expression of four transcription variant of peroxisome proliferator-activated receptor gamma gene (PPARG) (XM_015292931.1; XM_015292932.1; XM_015292933.1 and NM_001001460.1) in the liver of broilers was measured and its correlation with abdominal fat weight and relative abdominal fat content was investigated. The study was conducted with 92 slow-growing crossbred chickens (Cobb males x indigenous Green-legged Partridge female chickens) divided into fat and lean groups, according to their abdominal fat yield. The NM_001001460.1 transcriptwas upregulated with ratio of means 4.26 (p0.01) in the fat group in relation to the lean group. Expression of this transcript was highly correlated with relative abdominal fat content (0.71, p0.01) and abdominal fat weight (0.59, p0.01). Two SNPs are located in putative transcription factor binding sites. Mutation -991C>A disrupts PPAR while mutation -884C>T disrupts C/EBP putative binding site. The gene expression analysis of PPARg showed that the expression of the transcripts (NM_001001460.1) was more than four times higher in fat than in lean chickens. These results point out that the peroxisome proliferator-activated receptor gamma NM_001001460.1 transcript could be candidate gene for determination of abdominal fat deposition in the chickens.

Caracterização de uma nova mutação com perda de função do gene Kmt2d em camundongos / Characterization of a new mutation with loss of function in the Kmt2d gene in mice

O camundongo mutante recessivo bate-palmas (bapa) originou-se de mutagênese química induzida por ENU (N-ethyl-N-nitrosourea) e apresenta alterações posturais com movimentos anormais dos membros posteriores quando levantado pela cauda. No sequenciamento do exoma identificou-se uma mutação no gene Kmt2d, localizado no cromossomo 15, que foi confirmada pelo sequenciamento do DNA pelo método de Sanger. A perda da função do gene KMT2D localizada no cromossomo 12 em humanos foi descrita como responsável pela síndrome de Kabuki, que é uma anomalia congênita rara, autossômica dominante. O fenótipo clínico da doença é variável, mas algumas características mais comuns são face dismórfica, anormalidades esqueléticas, alterações nas impressões digitais, leve a moderado retardo mental e retardo do crescimento pós-natal. O presente trabalho teve como objetivo a análise do comportamento e da morfologia craniofacial dos camundongos bapa comparando com modelos de mutação do gene Kmt2d descritos na literatura.

The recessive mutant mouse named bate-palmas (bapa) – claps in Portuguese, originates from an ENU (N-ethyl-N-nitrosourea) mutagenesis program, presenting balance impairment and motor incoordination. Exome sequencing identified a mutation in the KMT2D gene, located on chromosome 15, which was confirmed by DNA sequence by the Sanger method. The loss of function of the gene KMT2D, located on chromosome 12 in humans, was described as being responsible for Kabuki syndrome, also known as Niikawa-Koruki syndrome, which is a rare congenital anomaly, autosomal dominant. The clinical phenotype of the disease is variable, but some common characteristics are dysmorphic facial features, skeletal abnormalities, fingerprint alterations, mild to moderate cognitive problems and postnatal growth retardation. The objective os this study was to analyze the behavior and craniofacial morphology of bapa mice comparing to KMT2D gene mutation models described on literature.

Caracterização de uma nova mutação com perda de função do gene Kmt2d em camundongos / Characterization of a new mutation with loss of function in the Kmt2d gene in mice

O camundongo mutante recessivo bate-palmas (bapa) originou-se de mutagênese química induzida por ENU (N-ethyl-N-nitrosourea) e apresenta alterações posturais com movimentos anormais dos membros posteriores quando levantado pela cauda. No sequenciamento do exoma identificou-se uma mutação no gene Kmt2d, localizado no cromossomo 15, que foi confirmada pelo sequenciamento do DNA pelo método de Sanger. A perda da função do gene KMT2D localizada no cromossomo 12 em humanos foi descrita como responsável pela síndrome de Kabuki, que é uma anomalia congênita rara, autossômica dominante. O fenótipo clínico da doença é variável, mas algumas características mais comuns são face dismórfica, anormalidades esqueléticas, alterações nas impressões digitais, leve a moderado retardo mental e retardo do crescimento pós-natal. O presente trabalho teve como objetivo a análise do comportamento e da morfologia craniofacial dos camundongos bapa comparando com modelos de mutação do gene Kmt2d descritos na literatura.(AU)

The recessive mutant mouse named bate-palmas (bapa) claps in Portuguese, originates from an ENU (N-ethyl-N-nitrosourea) mutagenesis program, presenting balance impairment and motor incoordination. Exome sequencing identified a mutation in the KMT2D gene, located on chromosome 15, which was confirmed by DNA sequence by the Sanger method. The loss of function of the gene KMT2D, located on chromosome 12 in humans, was described as being responsible for Kabuki syndrome, also known as Niikawa-Koruki syndrome, which is a rare congenital anomaly, autosomal dominant. The clinical phenotype of the disease is variable, but some common characteristics are dysmorphic facial features, skeletal abnormalities, fingerprint alterations, mild to moderate cognitive problems and postnatal growth retardation. The objective os this study was to analyze the behavior and craniofacial morphology of bapa mice comparing to KMT2D gene mutation models described on literature.(AU)

Alternative Transcription of Peroxisome Proliferator-Activated Receptor Gamma in the Liver Is Associated with Fatness of Chickens

The expression of four transcription variant of peroxisome proliferator-activated receptor gamma gene (PPARG) (XM_015292931.1; XM_015292932.1; XM_015292933.1 and NM_001001460.1) in the liver of broilers was measured and its correlation with abdominal fat weight and relative abdominal fat content was investigated. The study was conducted with 92 slow-growing crossbred chickens (Cobb males x indigenous Green-legged Partridge female chickens) divided into fat and lean groups, according to their abdominal fat yield. The NM_001001460.1 transcriptwas upregulated with ratio of means 4.26 (p0.01) in the fat group in relation to the lean group. Expression of this transcript was highly correlated with relative abdominal fat content (0.71, p0.01) and abdominal fat weight (0.59, p0.01). Two SNPs are located in putative transcription factor binding sites. Mutation -991C>A disrupts PPAR while mutation -884C>T disrupts C/EBP putative binding site. The gene expression analysis of PPARg showed that the expression of the transcripts (NM_001001460.1) was more than four times higher in fat than in lean chickens. These results point out that the peroxisome proliferator-activated receptor gamma NM_001001460.1 transcript could be candidate gene for determination of abdominal fat deposition in the chickens.(AU)

Alternative Transcription of Peroxisome Proliferator-Activated Receptor Gamma in the Liver Is Associated with Fatness of Chickens

The expression of four transcription variant of peroxisome proliferator-activated receptor gamma gene (PPARG) (XM_015292931.1; XM_015292932.1; XM_015292933.1 and NM_001001460.1) in the liver of broilers was measured and its correlation with abdominal fat weight and relative abdominal fat content was investigated. The study was conducted with 92 slow-growing crossbred chickens (Cobb males x indigenous Green-legged Partridge female chickens) divided into fat and lean groups, according to their abdominal fat yield. The NM_001001460.1 transcriptwas upregulated with ratio of means 4.26 (p0.01) in the fat group in relation to the lean group. Expression of this transcript was highly correlated with relative abdominal fat content (0.71, p0.01) and abdominal fat weight (0.59, p0.01). Two SNPs are located in putative transcription factor binding sites. Mutation -991C>A disrupts PPAR while mutation -884C>T disrupts C/EBP putative binding site. The gene expression analysis of PPARg showed that the expression of the transcripts (NM_001001460.1) was more than four times higher in fat than in lean chickens. These results point out that the peroxisome proliferator-activated receptor gamma NM_001001460.1 transcript could be candidate gene for determination of abdominal fat deposition in the chickens.

Circovírus suíno 2b: isolamento e taxa de mutação em linhagem de célula de macrófagos (J744) / Porcine circovirus 2b: isolations and mutation rate in J744 lineage macrophage cell

Porcine circovirus 2 (PCV2) is associated with various clinical signs that are collectively designated as Circovirosis and has a great impact on the pig industry. The virus isolation is classically performed on PK-15 cell line, but other cells have been tested. Despite advances in studies with PCV2, isolation is still a challenge. The difficulty of maintaining these cell lines commonly used associated with the use of toxic substances to the isolation of PCV2 had stimulated the present study, that had the objectives to describe the first isolation of PCV2b in macrophage cell lines, J744 and verify the mutation rate at this system. A sample of lung was pooled and submitted to sequencing in which was classified in genotype PCV2b. This sample was used to inoculate a bottle of J744 with 30% of confluence in RPMI with 10% fetal bovine serum and submitted to five passages, which were accompanied by chain reaction quantitative polymerase (PCRq). The initial and final viral loads were 2.90 × 103 and 4.45 × 108 DNA copies/µL for PCV2b, respectively. Sequencing confirmed the isolation and had eliminated possible co-isolation of more than one genotype. After five passages, the isolate showed 99.7% identity with description of five point of non-synonymous or/and synonymous mutations observed in the cap and rep gene. The results demonstrate that J744 cells exhibit susceptibility, and the instability of the virus in J744 will be important for understanding the virus.

Porcine circovirus 2 (PCV2) está associado a vários sinais clínicos que são designados coletivamente como Circovirose e tem grande impacto na suinocultura. O isolamento viral é classicamente realizado em células da linhagem PK-15, contudo outras células têm sido testadas. Apesar dos avanços nos estudos com PCV2, o isolamento ainda é um desafio. Diante da dificuldade de manutenção dessas linhagens celulares comumente utilizadas associadas à necessidade do uso de substâncias tóxicas para o isolamento de PCV2, os objetivos do presente trabalho foram descrever o primeiro isolamento de Porcine circovirus 2b em linhagens de células de macrófago (J744) e verificar a taxa de mutação nesse sistema. Uma amostra de pulmão foi submetida ao sequenciamento e agrupada ao genótipo PCV2b. Essa amostra foi utilizada para inocular uma garrafa de J744 (com 30% de confluência em meio RPMI com 10% de soro fetal bovino) e submetida a cinco passagens, as quais foram acompanhadas por reação em cadeia da polimerase quantitativa (PCRq). As cargas virais inicial e final foram de 2,90 × 103 e de 4,45 × 108 cópias de DNA/µL para PCV2b, respectivamente. O sequenciamento confirmou o isolamento e descartou o coisolamento de mais de um genótipo. Após cinco passagens, o isolado apresentou identidade de 99,7%, com descrição de cinco mutações pontuais, uma sinônima e quatro não sinônimas, observadas nas regiões do gene cap e rep. Os resultados obtidos demonstram que as células J744 apresentam a susceptibilidade, e a instabilidade do vírus em J744 será importante para a compreensão do vírus.

Circovírus suíno 2b: isolamento e taxa de mutação em linhagem de célula de macrófagos (J744) / Porcine circovirus 2b: isolations and mutation rate in J744 lineage macrophage cell

Porcine circovirus 2 (PCV2) está associado a vários sinais clínicos que são designados coletivamente como Circovirose e tem grande impacto na suinocultura. O isolamento viral é classicamente realizado em células da linhagem PK-15, contudo outras células têm sido testadas. Apesar dos avanços nos estudos com PCV2, o isolamento ainda é um desafio. Diante da dificuldade de manutenção dessas linhagens celulares comumente utilizadas associadas à necessidade do uso de substâncias tóxicas para o isolamento de PCV2, os objetivos do presente trabalho foram descrever o primeiro isolamento de Porcine circovirus 2b em linhagens de células de macrófago (J744) e verificar a taxa de mutação nesse sistema. Uma amostra de pulmão foi submetida ao sequenciamento e agrupada ao genótipo PCV2b. Essa amostra foi utilizada para inocular uma garrafa de J744 (com 30% de confluência em meio RPMI com 10% de soro fetal bovino) e submetida a cinco passagens, as quais foram acompanhadas por reação em cadeia da polimerase quantitativa (PCRq). As cargas virais inicial e final foram de 2,90 × 103 e de 4,45 × 108 cópias de DNA/µL para PCV2b, respectivamente. O sequenciamento confirmou o isolamento e descartou o coisolamento de mais de um genótipo. Após cinco passagens, o isolado apresentou identidade de 99,7%, com descrição de cinco mutações pontuais, uma sinônima e quatro não sinônimas, observadas nas regiões do gene cap e rep. Os resultados obtidos demonstram que as células J744 apresentam a susceptibilidade, e a instabilidade do vírus em J744 será importante para a compreensão do vírus.(AU)

Porcine circovirus 2 (PCV2) is associated with various clinical signs that are collectively designated as Circovirosis and has a great impact on the pig industry. The virus isolation is classically performed on PK-15 cell line, but other cells have been tested. Despite advances in studies with PCV2, isolation is still a challenge. The difficulty of maintaining these cell lines commonly used associated with the use of toxic substances to the isolation of PCV2 had stimulated the present study, that had the objectives to describe the first isolation of PCV2b in macrophage cell lines, J744 and verify the mutation rate at this system. A sample of lung was pooled and submitted to sequencing in which was classified in genotype PCV2b. This sample was used to inoculate a bottle of J744 with 30% of confluence in RPMI with 10% fetal bovine serum and submitted to five passages, which were accompanied by chain reaction quantitative polymerase (PCRq). The initial and final viral loads were 2.90 × 103 and 4.45 × 108 DNA copies/µL for PCV2b, respectively. Sequencing confirmed the isolation and had eliminated possible co-isolation of more than one genotype. After five passages, the isolate showed 99.7% identity with description of five point of non-synonymous or/and synonymous mutations observed in the cap and rep gene. The results demonstrate that J744 cells exhibit susceptibility, and the instability of the virus in J744 will be important for understanding the virus.(AU)

Circovírus suíno 2b: isolamento e taxa de mutação em linhagem de célula de macrófagos (J744) / Porcine circovirus 2b: isolations and mutation rate in J744 lineage macrophage cell

Porcine circovirus 2 (PCV2) is associated with various clinical signs that are collectively designated as Circovirosis and has a great impact on the pig industry. The virus isolation is classically performed on PK-15 cell line, but other cells have been tested. Despite advances in studies with PCV2, isolation is still a challenge. The difficulty of maintaining these cell lines commonly used associated with the use of toxic substances to the isolation of PCV2 had stimulated the present study, that had the objectives to describe the first isolation of PCV2b in macrophage cell lines, J744 and verify the mutation rate at this system. A sample of lung was pooled and submitted to sequencing in which was classified in genotype PCV2b. This sample was used to inoculate a bottle of J744 with 30% of confluence in RPMI with 10% fetal bovine serum and submitted to five passages, which were accompanied by chain reaction quantitative polymerase (PCRq). The initial and final viral loads were 2.90 × 103 and 4.45 × 108 DNA copies/µL for PCV2b, respectively. Sequencing confirmed the isolation and had eliminated possible co-isolation of more than one genotype. After five passages, the isolate showed 99.7% identity with description of five point of non-synonymous or/and synonymous mutations observed in the cap and rep gene. The results demonstrate that J744 cells exhibit susceptibility, and the instability of the virus in J744 will be important for understanding the virus.(AU)

Porcine circovirus 2 (PCV2) está associado a vários sinais clínicos que são designados coletivamente como Circovirose e tem grande impacto na suinocultura. O isolamento viral é classicamente realizado em células da linhagem PK-15, contudo outras células têm sido testadas. Apesar dos avanços nos estudos com PCV2, o isolamento ainda é um desafio. Diante da dificuldade de manutenção dessas linhagens celulares comumente utilizadas associadas à necessidade do uso de substâncias tóxicas para o isolamento de PCV2, os objetivos do presente trabalho foram descrever o primeiro isolamento de Porcine circovirus 2b em linhagens de células de macrófago (J744) e verificar a taxa de mutação nesse sistema. Uma amostra de pulmão foi submetida ao sequenciamento e agrupada ao genótipo PCV2b. Essa amostra foi utilizada para inocular uma garrafa de J744 (com 30% de confluência em meio RPMI com 10% de soro fetal bovino) e submetida a cinco passagens, as quais foram acompanhadas por reação em cadeia da polimerase quantitativa (PCRq). As cargas virais inicial e final foram de 2,90 × 103 e de 4,45 × 108 cópias de DNA/µL para PCV2b, respectivamente. O sequenciamento confirmou o isolamento e descartou o coisolamento de mais de um genótipo. Após cinco passagens, o isolado apresentou identidade de 99,7%, com descrição de cinco mutações pontuais, uma sinônima e quatro não sinônimas, observadas nas regiões do gene cap e rep. Os resultados obtidos demonstram que as células J744 apresentam a susceptibilidade, e a instabilidade do vírus em J744 será importante para a compreensão do vírus.(AU)

Prevalência da mutação causadora da paralisia periódica hipercalêmica em equinos da raça Quarto de Milha no Brasil / Prevalence of the hypercalemic periodic paralysis mutation in Quarter Horses in Brazil

A paralisia periódica hipercalêmica (HYPP) é uma das principais enfermidades genéticas de caráter dominante que acometem cavalos da raça Quarto de milha (QM). A HYPP é causada por uma mutação pontual no gene SCN4A e, apesar de estar presente nos cavalos QM no Brasil, dados sobre a prevalência da HYPP são escassos. O objetivo deste trabalho foi verificar a prevalência da mutação responsável pela HYPP em cavalos QM, utilizados nas modalidades esportivas de rédeas (n=160), apartação (n=160), tambor e baliza (n=160), corrida (n=160) e conformação (n=101). Foram utilizados DNA sanguíneo dos 741 equinos; o teste genético para enfermidade foi padronizado e as amostras sequenciadas para identificação da mutação no gene alvo. A prevalência de HYPP na população amostrada foi de 4,2%, sendo que somente na linhagem de conformação foram identificados animais positivos (30,7%). Medidas de controle mais efetivas devem ser adotadas para diminuir a prevalência da HYPP.(AU)

Hyperkalemic Periodic Paralysis (HYPP) is one of the major dominant genetic diseases which affect Quarter horses (QH). The HYPP is caused by a point mutation in the SCN4A gene and despite the presence of HYPP in Brazilian QH, limited data on the disease prevalence are available. The aim of this study was to investigate the HYPP mutation in QH belonging to reining (n=160), cutting (n=160), barrel racing (n=160), racing (n=160) and halter (n=101) competitive disciplines. Blood DNA from 741 horses were used. Genetic tests were standardized and samples were sequenced to identify the mutation on the target gene. The prevalence of HYPP on the sampled population was 4.2% and the positive animals (30.7%) were only identified in the halter lineage. More effective actions on HYPP control should be done to reduce the disease prevalence. .(AU)