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1.
J Chem Phys ; 158(12): 124102, 2023 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-37003769

RESUMO

We show how to construct an effective Hamiltonian whose dimension scales linearly with system size, and whose eigenvalues systematically approximate the excitation energies of GW theory. This is achieved by rigorously expanding the self-energy in order to exactly conserve a desired number of frequency-independent moments of the self-energy dynamics. Recasting GW in this way admits a low-scaling O[N4] approach to build and solve this Hamiltonian, with a proposal to reduce this further to O[N3]. This relies on exposing a novel recursive framework for the density response moments of the random phase approximation, where the efficient calculation of its starting point mirrors the low-scaling approaches to compute RPA correlation energies. The frequency integration of GW, which distinguishes so many different GW variants, can be performed without approximation directly in this moment representation. Furthermore, the solution to the Dyson equation can be performed exactly, avoiding analytic continuation, diagonal approximations, or iterative solutions to the quasiparticle equation, with the full-frequency spectrum obtained from the complete solution of this effective static Hamiltonian. We show how this approach converges rapidly with respect to the order of the conserved self-energy moments and is applied across the GW100 benchmark dataset to obtain accurate GW spectra in comparison to traditional implementations. We also show the ability to systematically converge all-electron full-frequency spectra and high-energy features beyond frontier excitations, as well as avoiding discontinuities in the spectrum, which afflict many other GW approaches.

2.
Chemphyschem ; 20(4): 555-564, 2019 02 18.
Artigo em Inglês | MEDLINE | ID: mdl-30681256

RESUMO

The energy profiles of hydrogen-bonded heterocyclic aromatics have been decomposed into atomistic energy contributions using the Interacting Quantum Atoms (IQA) method. The resulting energy contributions have been sequenced by the Relative Energy Gradient (REG) approach to determine their influence upon the shape of these energy profiles. The results show inadequacies in Jorgensen's secondary interaction hypothesis (SIH). A novel method of finding a condensed analogy for the interaction between the molecules is presented. The findings of this work further doubt the validity of the SIH, and reinforce previous warnings against its misguided use.

4.
Nat Genet ; 38(11): 1242-4, 2006 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-17013395

RESUMO

Idiopathic congenital nystagmus is characterized by involuntary, periodic, predominantly horizontal oscillations of both eyes. We identified 22 mutations in FRMD7 in 26 families with X-linked idiopathic congenital nystagmus. Screening of 42 singleton cases of idiopathic congenital nystagmus (28 male, 14 females) yielded three mutations (7%). We found restricted expression of FRMD7 in human embryonic brain and developing neural retina, suggesting a specific role in the control of eye movement and gaze stability.


Assuntos
Proteínas do Citoesqueleto/genética , Genes Ligados ao Cromossomo X , Proteínas de Membrana/genética , Nistagmo Congênito/genética , Encéfalo/embriologia , Encéfalo/metabolismo , Mapeamento Cromossômico , Cromossomos Humanos X , Proteínas do Citoesqueleto/fisiologia , Movimentos Oculares/genética , Movimentos Oculares/fisiologia , Feminino , Regulação da Expressão Gênica no Desenvolvimento , Ligação Genética , Humanos , Masculino , Proteínas de Membrana/fisiologia , Mutação/fisiologia , Linhagem , Retina/metabolismo
5.
Int Ophthalmol ; 32(2): 161-3, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22222718

RESUMO

Cases of ocular inflammation following penetration by urticating hairs from caterpillars and tarantulas have been previously reported and although rare, the condition is increasingly being recognised as a cause of chronic panuveitis. The long-term outcomes and prognosis of this condition are not well known. This article describes a case of chronic panuveitis as a result of ocular penetration by tarantula setae, and its challenging management that ultimately required pars plana vitrectomy. Interventional case report: A 29-year-old male presented with chronic panuveitis secondary to tarantula-hair penetration. Initial management with mechanical removal of hairs from the cornea and intensive topical steroid therapy for 18 months did not adequately control his symptoms. Pars plana vitrectomy was carried out and at 6-month follow-up the patient was symptom-free without any pharmacological therapy. We propose early pars plana vitrectomy as a management option for treatment-resistant panuveitis in cases of ophthalmia nodosa secondary to setae-related injury.


Assuntos
Corpos Estranhos no Olho/cirurgia , Ferimentos Oculares Penetrantes/cirurgia , Pan-Uveíte/cirurgia , Sensilas/lesões , Aranhas , Vitrectomia , Adulto , Animais , Doença Crônica , Corpos Estranhos no Olho/etiologia , Ferimentos Oculares Penetrantes/etiologia , Humanos , Masculino , Pan-Uveíte/etiologia , Acuidade Visual/fisiologia
6.
J Chem Theory Comput ; 18(11): 6622-6636, 2022 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-36283078

RESUMO

We propose an approach to build "full-frequency" quasiparticle spectra from conservation of a set of static expectation values. These expectation values define the moments of the spectral distribution, resulting in an efficient and systematically improvable expansion. By computing these initial moment constraints at the coupled-cluster level, we demonstrate convergence in both correlated state-specific and full spectral quantities, while requiring a fraction of the effort of traditional Green's function approaches. Tested across the GW100 benchmark set for charged excitation spectra, we can converge frontier excitations to within the inherent accuracy of the CCSD approximation, while obtaining a simultaneous representation of the entire excitation spectrum at all energy scales.

7.
J Phys Chem Lett ; 12(31): 7650-7658, 2021 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-34351782

RESUMO

A reliable and efficient computation of the entire single-particle spectrum of correlated molecules is an outstanding challenge in the field of quantum chemistry, with standard density functional theory approaches often giving an inadequate description of excitation energies and gaps. In this work, we expand upon a recently introduced approach that relies on a fully self-consistent many-body perturbation theory coupled to a nonperturbative truncation of the effective dynamics at each step. We show that this yields a low-scaling and accurate method across a diverse benchmark test set that is capable of treating moderate levels of strong correlation effects, and we detail an efficient implementation for applications involving up to ∼1000 orbitals on parallel resources. We then use this method to characterize the spectral properties of the antimalarial drug molecule artemisinin, resolving discrepancies in previous works concerning the active sites of the lowest-energy fundamental excitations of the system.

8.
J Chem Theory Comput ; 16(2): 1090-1104, 2020 Feb 11.
Artigo em Inglês | MEDLINE | ID: mdl-31951406

RESUMO

We present an approach to a renormalized second-order Green's function perturbation theory (GF2), which avoids all dependency on continuous variables, grids, or explicit Green's functions and is instead formulated entirely in terms of static quantities and wave functions. Correlation effects from MP2 diagrams are iteratively incorporated to modify the underlying spectrum of excitations by coupling the physical system to fictitious auxiliary degrees of freedom, allowing for single-particle orbitals to delocalize into this additional space. The overall approach is shown to be rigorously O[N5], after an appropriate compression of this auxiliary space. This is achieved via a novel scheme, which ensures that a desired number of moments of the underlying occupied and virtual spectra are conserved in the compression, allowing a rapid and systematically improvable convergence to the limit of the effective dynamical resolution. The approach is found to then allow for the qualitative description of stronger correlation effects, avoiding the divergences of MP2, as well as its orbital-optimized version. On application to the G1 test set, we find that modification up to only the third spectral moment of the underlying spectrum from which the double excitations are built are required for accurate energetics, even in strongly correlated regimes. This is beyond simple self-consistent changes to the density matrix of the system but far from requiring a description of the full dynamics of the frequency-dependent self-energy.

9.
J Chem Theory Comput ; 16(10): 6294-6304, 2020 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-32886508

RESUMO

We present a self-consistent approach for computing the correlated quasiparticle spectrum of charged excitations in iterative O[N5] computational time. This is based on the auxiliary second-order Green's function approach [Backhouse, O. J. Chem. Theory Comput., 2000], in which a self-consistent effective Hamiltonian is constructed by systematically renormalizing the dynamical effects of the self-energy at second-order perturbation theory. From extensive benchmarking across the W4-11 molecular test set, we show that the iterative renormalization and truncation of the effective dynamical resolution arising from the 2h1p and 1h2p spaces can substantially improve the quality of the resulting ionization potential and electron affinity predictions compared to benchmark values. The resulting method is shown to be superior in accuracy to similarly scaling quantum chemical methods for charged excitations in EOM-CC2 and ADC(2), across this test set, while the self-consistency also removes the dependence on the underlying mean-field reference. The approach also allows for single-shot computation of the entire quasiparticle spectrum, which is applied to the benzoquinone molecule and demonstrates the reduction in the single-particle gap due to the correlated physics, and gives direct access to the localization of the Dyson orbitals.

10.
Ophthalmology ; 113(4): 701-6, 2006 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16581431

RESUMO

PURPOSE: To describe the clinical features in a series of patients with poststreptococcal uveitis and to review literature on the pathophysiology and management. DESIGN: Retrospective and descriptive case series. PARTICIPANTS: Ten consecutive cases of poststreptococcal syndrome uveitis diagnosed between 1996 and 2003. METHODS: Review of patient case notes. MAIN OUTCOME MEASURES: Age, laterality, clinical features, and anti-streptococcal lysin O titers. RESULTS: Ten consecutive cases of poststreptococcal syndrome uveitis were identified. All our cases had bilateral nongranulomatous inflammation and raised anti-streptococcal lysin O titers. Collating data from previous reports and this series showed that 96% of the patients were below 40 years of age, and 87.5% had evidence of previous streptococcal infection. One third of the patients had posterior segment involvement. In our patients, this was in the form of vitritis, focal retinitis, optic disc swelling, and multifocal choroiditis. CONCLUSIONS: Poststreptococcal syndrome uveitis should be considered in the etiology of acute bilateral nongranulomatous uveitis in children and young patients.


Assuntos
Corioidite/microbiologia , Oftalmopatias/microbiologia , Retinite/microbiologia , Infecções Estreptocócicas/microbiologia , Uveíte/microbiologia , Corpo Vítreo/microbiologia , Adolescente , Adulto , Antiestreptolisina/análise , Criança , Pré-Escolar , Corioidite/imunologia , Oftalmopatias/imunologia , Feminino , Humanos , Masculino , Papiledema/imunologia , Papiledema/microbiologia , Retinite/imunologia , Estudos Retrospectivos , Infecções Estreptocócicas/imunologia , Síndrome , Uveíte/imunologia , Corpo Vítreo/imunologia
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