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1.
Eur J Clin Invest ; 43(11): 1113-9, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24028296

RESUMO

BACKGROUND: Type 2 diabetes mellitus (DM) is a common medical disorder and a leading cause of morbidity and mortality worldwide. We investigated whether chronic obstructive pulmonary disease (COPD) was the risk factor for type 2 diabetes in an Asian population. MATERIALS AND METHODS: From Taiwan's National Health Insurance Research Database, we collected data from 16,088 patients, including 8044 COPD patients and 8044 age- and gender- matched control subjects. Cox proportional hazard regression was performed to evaluate independent risk factors for type 2 diabetes in all patients and identify risk factors in patients with COPD. RESULTS: During the 5.5-year follow-up, patients with COPD were found to have a significantly higher rate of incident type 2 diabetes than the control group (P < 0.001). COPD was significantly associated with type 2 diabetes hazard ratio (HR : 1.41, 1.23-1.63, P < 0.001) after adjusting sex, age, residential area, insurance premium, steroid use, hypertriglycemia, hypertension, coronary artery disease (CAD) and cerebrovascular disease. Cox regression analysis showed that hypertension (HR : 1.55, 1.33-1.80, P < 0.001) and hypertriglycemia (HR : 1.48, 1.15-1.90, P = 0.002) were important risk factors for type 2 diabetes in patients with COPD. CONCLUSIONS: Patients with COPD have a higher risk of type 2 diabetes compared with control subjects after adjusting for confounding factors such as sex, age, residential area, insurance premium, steroid use, hypertriglycemia, hypertension, CAD and cerebrovascular disease. Continuous surveillance of signals of dysglycemia may be incorporated into care programmes for patients with COPD.


Assuntos
Diabetes Mellitus Tipo 2/etiologia , Doença Pulmonar Obstrutiva Crônica/complicações , Adolescente , Adulto , Distribuição por Idade , Idoso , Idoso de 80 Anos ou mais , Diabetes Mellitus Tipo 2/mortalidade , Métodos Epidemiológicos , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Doença Pulmonar Obstrutiva Crônica/mortalidade , Distribuição por Sexo , Taiwan/epidemiologia , Adulto Jovem
2.
Soc Psychiatry Psychiatr Epidemiol ; 48(10): 1621-7, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23563393

RESUMO

OBJECTIVE: To investigate the risk and predictors of suicide and non-suicide mortality after self-harm in a Taiwanese population. METHOD: Between July 2006 and June 2008, 3,299 individuals who harmed themselves were recruited to a population-based self-harm register in Taoyuan County, Taiwan. They were followed until December 2008, with record linkage for date and cause of death in a national mortality database. RESULTS: In total, 115 individuals died, 52 through suicide. The risks of suicide and non-suicide mortality in the first year were 1.5 and 2.2%, respectively, representing an approximately 75-fold and 5-fold age- and gender-standardized increase compared with the general population in Taiwan. Male gender, rural residence, more lethal methods of self-harm and self-cited stressors for the index self-harm episode (unemployment, and chronic somatic illness) were independent risk factors for suicide mortality. Male gender, older age, rural residence and more lethal methods of self-harm were also independent risk factors for non-suicide mortality. The association between of unemployment as a cited reason for self-harm and later suicide was strongest in men and in those aged more than 45 years. CONCLUSIONS: Relatively high rates of suicide and non-suicide mortality were found following self-harm. Suicide prevention needs to take into account of risk factors for fatal repetition of self-harm.


Assuntos
Mortalidade , Comportamento Autodestrutivo/epidemiologia , Suicídio , Adolescente , Adulto , Distribuição por Idade , Idoso , Criança , Feminino , Seguimentos , Previsões , Humanos , Masculino , Pessoa de Meia-Idade , Fatores de Risco , População Rural , Comportamento Autodestrutivo/psicologia , Distribuição por Sexo , Fatores Socioeconômicos , Taiwan/epidemiologia , Desemprego , População Urbana , Adulto Jovem
3.
J Appl Microbiol ; 113(5): 1139-44, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-22816486

RESUMO

AIMS: The ability of 1-aminocyclopropane-1-carboxylate (ACC) deaminase-containing plant growth-promoting bacterial (PGPB) endophytes Pseudomonas fluorescens YsS6 and Pseudomonas migulae 8R6, their ACC deaminase minus mutants and the rhizospheric plant growth-promoting bacterium Pseudomonas putida UW4 to delay the senescence of mini carnation cut flowers was assessed. METHODS AND RESULTS: Fresh cut flowers were incubated with either a bacterial cell suspension, the ethylene precursor ACC, the ethylene inhibitor l-α-(aminoethoxyvinyl)-glycine or 0·85% NaCl at room temperature for 11 days. Levels of flower senescence were recorded every other day. To verify the presence of endophytes inside the plant tissues, scanning electron microscopy was performed. Among all treatments, flowers treated with wild-type ACC deaminase-containing endophytic strains exhibited the most significant delay in flower senescence, while flowers treated with the ACC deaminase minus mutants senesced at a rate similar to the control. Flowers treated with Ps. putida UW4 senesced more rapidly than untreated control flowers. CONCLUSION: The only difference between wild-type and mutant bacterial endophytes was ACC deaminase activity so that it may be concluded that this enzyme is directly responsible for the significant delay in flower senescence. Despite containing ACC deaminase activity, Ps. putida UW4 is not taken up by the cut flowers and therefore has no effect on prolonging their shelf life. SIGNIFICANCE AND IMPACT OF THE STUDY: The world-wide cut flower industry currently uses expensive and potentially environmentally dangerous chemical inhibitors of ethylene to prolong the shelf life of cut flowers. The use of PGPB endophytes with ACC deaminase activity has the potential to replace the chemicals that are currently used by the cut flower industry.


Assuntos
Carbono-Carbono Liases/farmacologia , Etilenos/antagonistas & inibidores , Flores/crescimento & desenvolvimento , Pseudomonas/enzimologia , Carbono-Carbono Liases/genética , Endófitos/enzimologia , Flores/efeitos dos fármacos , Glicina/análogos & derivados , Glicina/farmacologia , Pseudomonas/genética , Pseudomonas fluorescens/enzimologia , Pseudomonas fluorescens/genética , Pseudomonas putida/enzimologia , Pseudomonas putida/genética , Cloreto de Sódio/farmacologia
4.
Br J Psychiatry ; 198(1): 31-6, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21200074

RESUMO

BACKGROUND: Little is known about outcomes after self-harm in East Asia. AIMS: To investigate mortality after self-harm in a Taiwanese population. METHOD: Between 2000 and 2003, 1083 individuals who self-harmed were identified through a population self-harm register in Nantou County, Taiwan, and followed until 2007 for date and cause of death on a national mortality database. RESULTS: In total, 145 individuals died, 48 through suicide. The risks of all-cause and suicide mortality in the first year were 4.7% and 2.1% respectively, representing 8- and 131-fold age- and gender-standardised increases. Male gender and older age were independent risk factors for both suicide and non-suicide mortality. Use of more lethal methods in the index episode was associated with higher mortality but this was accounted for by gender. CONCLUSIONS: Results in this sample support the recommendation that people with a history of recent self-harm should be a major target for suicide prevention programmes.


Assuntos
Comportamento Autodestrutivo/mortalidade , Suicídio/estatística & dados numéricos , Adulto , Fatores Etários , Idoso , Métodos Epidemiológicos , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Fatores Sexuais , Suicídio/tendências , Taiwan/epidemiologia
5.
Ecol Evol ; 11(16): 11457-11476, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34429933

RESUMO

Urban stressors represent strong selective gradients that can elicit evolutionary change, especially in non-native species that may harbor substantial within-population variability. To test whether urban stressors drive phenotypic differentiation and influence local adaptation, we compared stress responses of populations of a ubiquitous invader, reed canary grass (Phalaris arundinacea). Specifically, we quantified responses to salt, copper, and zinc additions by reed canary grass collected from four populations spanning an urbanization gradient (natural, rural, moderate urban, and intense urban). We measured ten phenotypic traits and trait plasticities, because reed canary grass is known to be highly plastic and because plasticity may enhance invasion success. We tested the following hypotheses: (a) Source populations vary systematically in their stress response, with the intense urban population least sensitive and the natural population most sensitive, and (b) plastic responses are adaptive under stressful conditions. We found clear trait variation among populations, with the greatest divergence in traits and trait plasticities between the natural and intense urban populations. The intense urban population showed stress tolerator characteristics for resource acquisition traits including leaf dry matter content and specific root length. Trait plasticity varied among populations for over half the traits measured, highlighting that plasticity differences were as common as trait differences. Plasticity in root mass ratio and specific root length were adaptive in some contexts, suggesting that natural selection by anthropogenic stressors may have contributed to root trait differences. Reed canary grass populations in highly urbanized wetlands may therefore be evolving enhanced tolerance to urban stressors, suggesting a mechanism by which invasive species may proliferate across urban wetland systems generally.

6.
Trends Microbiol ; 29(2): 89-92, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-32800611

RESUMO

The microbiome research field is rapidly evolving, but the required biobanking infrastructure is currently fragmented and not prepared for the biobanking of microbiomes. The rapid advancement of technologies requires an urgent assessment of how biobanks can underpin research by preserving microbiome samples and their functional potential.


Assuntos
Bancos de Espécimes Biológicos/normas , Microbiota , Animais , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Bancos de Espécimes Biológicos/tendências , Pesquisa Biomédica , Humanos , Mamíferos/microbiologia , Plantas/microbiologia , Preservação Biológica
7.
Suicide Life Threat Behav ; 39(3): 332-42, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19606924

RESUMO

This study established the psychometric properties of the Chinese version of the Suicide Intent Scale (SIS) in a clinic- and community-based sample of 36 patients and 592 respondents, respectively. Results showed that the Chinese SIS demonstrated good inter-rater and test-retest reliability. Factor analysis generated three factors (Precautions, Planning, and Seriousness) explaining 92.9% of the total variance with high internal consistency. It was moderately correlated with depressive symptoms. Results suggest that the Chinese SIS is a reliable and valid instrument for use in assessing the extent of suicidal intention among subjects with deliberate self-harm in ethnic Chinese populations.


Assuntos
Comparação Transcultural , Intenção , Idioma , Inventário de Personalidade/estatística & dados numéricos , Tentativa de Suicídio/etnologia , Tentativa de Suicídio/psicologia , Suicídio/etnologia , Suicídio/psicologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Criança , Transtorno Depressivo/diagnóstico , Transtorno Depressivo/etnologia , Transtorno Depressivo/psicologia , Feminino , Humanos , Masculino , Programas de Rastreamento , Pessoa de Meia-Idade , Psicometria/estatística & dados numéricos , Reprodutibilidade dos Testes , Taiwan , Tradução , Adulto Jovem
8.
Int J Epidemiol ; 36(6): 1229-34, 2007 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-17905808

RESUMO

BACKGROUND: The impact of media reporting of suicides of entertainment celebrities may affect suicide rates due to an imitation effect. We investigated the impact on suicides of the media reporting of the suicide of a male television celebrity. METHODS: All suicides during 2003-2005 in Taiwan (n = 10,945) were included in this study. A Poisson time series autoregression analysis was conducted to examine whether there was an increase in suicides during the 4-week period after extensive media reporting of the celebrity suicide. RESULTS: After controlling for seasonal variation, calendar year, temperature, humidity and unemployment rate, there was a marked increase in the number of suicides during the 4-week period after media reporting (relative risk = 1.17, 95% CI 1.04-1.31). The increase was in men (relative risk = 1.30, 95% CI 1.14-1.50) and for the individuals using the same highly lethal method (hanging) as the TV actor did (relative risk = 1.51, 95% CI 1.25-1.83). However, the age groups in which the increase occurred were younger than the age of the celebrity. CONCLUSIONS: The extensive media reporting of the celebrity suicide was followed by an increase in suicides with a strong implication of a modelling effect. The results provide further support for the need for more restrained reporting of suicides as part of suicide prevention strategies to decrease the imitation effect.


Assuntos
Pessoas Famosas , Comportamento Imitativo , Meios de Comunicação de Massa , Suicídio/psicologia , Adulto , Fatores Etários , Feminino , Análise de Fourier , Humanos , Incidência , Masculino , Pessoa de Meia-Idade , Distribuição de Poisson , Suicídio/tendências , Taiwan/epidemiologia
10.
Genetics ; 127(1): 5-20, 1991 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-1849856

RESUMO

A series of 120-600 kilobase deletions with defined endpoints were made in the 1600-kilobase Rhizobium meliloti megaplasmid pRmeSU47b, by homologous recombination between the IS50 elements of transposon insertions. Utilizing IS 50-mediated homologous recombination we also made defined reductions in deletion size and combined adjacent deletions. Deletion structure was confirmed by phage transduction and Southern hybridization analysis. Collectively these deletions span 1400 kilobases of pRmeSU47b, indicating that the majority of the plasmid is not essential for cell viability. This was further confirmed by the construction of a strain SU47 derivative which carries only 450 kilobases of the pRmeSU47b megaplasmid. Examination of the deletion mutants for phenotype revealed novel loci required for dulcitol, melibiose, raffinose, beta-hydroxybutyrate, acetoacetate, protocatechuate and quinate utilization. Previously unidentified loci required for effective root nodule development and exopolysaccharide synthesis were also found. Various deletion mutants were deficient in dicarboxylate transport, lactose utilization, and thiamine and exopolysaccharide biosynthesis, as predicted from earlier studies of this megaplasmid.


Assuntos
Deleção Cromossômica , Plasmídeos/genética , Replicon/genética , Rhizobium/genética , Southern Blotting , Mapeamento Cromossômico , Cromossomos Bacterianos , Elementos de DNA Transponíveis , DNA Bacteriano , DNA Recombinante , Eletroforese em Gel de Ágar , Mutagênese , Fenótipo , Plantas/microbiologia , Transdução Genética
11.
Genetics ; 146(4): 1211-20, 1997 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9258668

RESUMO

Chromosomal and megaplasmid loci that affect the poly-3-hydroxybutyrate (PHB) degradation pathway in Rhizobium meliloti were identified. A clone that restores the ability of certain R. meliloti mutants with defined deletions in megaplasmid pRmeSU47b to use 3-hydroxybutyrate or acetoacetate as the sole carbon source was isolated from a cosmid library of R. meliloti genomic DNA. Tn5 insertion mutagenesis, followed by merodiploid complementation analysis, demonstrated that the locus consists of at least four transcriptional units, bhbA-D. We also identified loci involved in 3-hydroxybutyrate and/or acetoacetate utilization by screening for mutants that had lost the ability to use 3-hydroxybutyrate as the sole carbon source while retaining the ability to use acetate (thus ensuring an intact glyoxylate cycle and gluconeogenic pathway). These mutants fell into four classes, as determined by replicon mobilization experiments and genetic linkage in phage transduction; one class corresponded to the bhb locus on pRmeSU47b, two classes mapped to different regions on the chromosome and the fourth, bdhA, represented by a single mutant, mapped to another pRmeSU47b locus, near bacA. The bdhA mutant is deficient in 3-hydroxybutrate dehydrogenase activity.


Assuntos
Genes Bacterianos , Hidroxibutiratos/metabolismo , Poliésteres/metabolismo , Sinorhizobium meliloti/genética , Sinorhizobium meliloti/metabolismo , Acetoacetatos/metabolismo , Biodegradação Ambiental , Mapeamento Cromossômico , Cromossomos Bacterianos/genética , Clonagem Molecular , Cosmídeos , Elementos de DNA Transponíveis , Teste de Complementação Genética , Cinética , Mutagênese Insercional , Mutação , Plasmídeos/genética , Sinorhizobium meliloti/crescimento & desenvolvimento
12.
Genetics ; 136(4): 1233-43, 1994 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-8013901

RESUMO

Rhizobium meliloti mutants carrying ndvF insertion or deletion mutations induce nodules on alfalfa which contain very few infected cells and fail to fix N2 (Fix-). We have characterized five independent second site mutations (designated sfx) which completely suppress the Fix- phenotype of ndvF mutants on Medicago sativa but not on another R. meliloti host Melilotus alba. Genetic mapping and phenotypic analysis revealed that the suppressor mutations sfx-1, sfx-4 and sfx-5 mapped to a single locus which was distinct from another locus defined by the sfx-2 and sfx-3 mutations. Tn5-mob-mediated conjugal mapping experiments showed that the sfx-1 locus was located clockwise from trp-33 on the R. meliloti chromosome and a detailed cotransduction map of this region was generated. To clone the sfx-1 locus, we prepared a cosmid library from total DNA obtained from an sfx-1, ndvF deletion strain. From this library, a cosmid pTH56, which converted Fix- ndvF mutants to Fix+, was isolated. Southern blot analysis provided direct physical evidence that the insert DNA in plasmid pTH56 was contiguous with the sfx-1 region. On low osmolarity glutamate-yeast extract-mannitol-salts medium (GYM) agar medium, ndvF insertion and deletion mutants were found to have a mucoid colony phenotype, as opposed to the dry colony phenotype of the wild-type strain. This phenotype was shown to be dependent on the exoB and expE genes required for synthesis of exopolysaccharide II in R. meliloti but not to be dependent on genes required exclusively for the synthesis of the succinoglycan or exopolysaccharide I. Transduction of either sfx-1 or sfx-2 or transfer of the cosmid pTH56 into the ndvF mutants restored them to a wild-type dry colony phenotype. The mucoid phenotype is not responsible for the Fix- phenotype of ndvF mutants as the Fix-, ndvF exp double mutants can be complemented to Fix+ by introducing plasmids which carry only the wild-type ndvF genes.


Assuntos
Genes Bacterianos , Medicago sativa/microbiologia , Mutação , Sinorhizobium meliloti/genética , Alelos , Mapeamento Cromossômico , Cromossomos Bacterianos , Clonagem Molecular , Meios de Cultura/metabolismo , Genes Supressores , Fixação de Nitrogênio/genética , Concentração Osmolar , Fenótipo , Deleção de Sequência , Sinorhizobium meliloti/crescimento & desenvolvimento
13.
Mol Plant Microbe Interact ; 10(2): 221-7, 1997 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-9057328

RESUMO

The ability of Agrobacterium strains to infect transformation-recalcitrant maize plants has been shown to be determined mainly by the virA locus, implicating vir gene induction as the major factor influencing maize infection. In this report, we further explore the roles of vir induction-associated bacterial factors in maize infection using the technique of agroinfection. The Ti plasmid and virA source are shown to be important in determining the ability of a strain to infect maize, and the monosaccharide binding protein ChvE is absolutely required for maize agroinfection. The linker domain of VirAC58 from an agroinfection-competent strain, C58, is sufficient to convert VirAA6 of a nonagroinfecting strain, A348,to agroinfection competence. The periplasmic domain of VirAC58 is also able to confer a moderate level of agroinfection competence to VirAA6. In addition, the VirAA6 protein from A348 is agroinfection competent when removed from its cognate Ti plasmid background and placed in a pTiC58 background. The presence of a pTiA6-encoded, VirAA6-specific inhibitor is hypothesized and examined.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/fisiologia , Rhizobium/patogenicidade , Fatores de Virulência , Zea mays/microbiologia , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Genes Bacterianos , Dados de Sequência Molecular , Rhizobium/genética , Homologia de Sequência de Aminoácidos , Especificidade da Espécie , Transformação Genética , Virulência/genética , Zea mays/genética
14.
Mol Plant Microbe Interact ; 14(12): 1404-10, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11768535

RESUMO

Bradyrhizobium japonicum mutants with altered nod gene induction characteristics were isolated by screening mutants for genistein-independent nod gene expression. Plasmid pZB32, carrying a nodY::lacZ transcriptional gene fusion, was introduced into B. japonicum cells that had been subjected to UV mutagenesis. Ten independent transformants producing a blue color on plates containing 5bromo-4chloro-3indolyl-beta-D-galactopyranoside but lacking genistein, indicative of constitutive expression of the nodY::lacZ reporter gene, were isolated. Beta-galactosidase activity assays revealed that while all of the 10 strains were sensitive to low concentrations of genistein, none exhibited truly constitutive nodY::lacZ expression in liquid culture. Soybean plants inoculated with three of the mutants were chlorotic and stunted, with shoot dry weights close to those of the uninoculated plants, indicating the absence of nitrogen fixation. Differences in the kinetics of nodY::lacZ expression and lipochitin oligosaccharide Nod signal production suggested that the strains carried different mutations. Some of these strains may be useful in mitigating the low root zone temperature-associated delay in soybean nodulation at the northern extent of soybean cultivation.


Assuntos
Bradyrhizobium/genética , Regulação Bacteriana da Expressão Gênica , Genisteína/farmacologia , Lipopolissacarídeos/biossíntese , Bradyrhizobium/efeitos dos fármacos , Mutagênese , Fenótipo , Simbiose , Resistência a Tetraciclina/genética , Ativação Transcricional , Transformação Bacteriana/genética , Transformação Bacteriana/efeitos da radiação , Raios Ultravioleta
15.
Gene ; 226(1): 121-7, 1999 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-9889346

RESUMO

A cluster of genes on megaplasmid pRmeSU47b, bhbA-D, is required for growth on the polyhydroxyalkanoate degradation pathway intermediates 3-hydroxybutyrate and acetoacetate as sole carbon source. DNA sequence analysis of the bhbA gene indicated that it encoded a protein of 712 amino acids (aa) (78kDa) which appeared to be a homodimeric methylmalonyl-CoA mutase enzyme (EC 5.4.99.2). Cell-free extract of a bhbA::Tn5 mutant was devoid of methylmalonyl-CoA mutase activity, thus confirming the identity of the bhbA-encoded enzyme. The reason for the requirement of methylmalonyl-CoA mutase activity for operation of the polyhydroxyalkanoate degradation pathway is not immediately apparent. Situated immediately upstream of bhbA, in the same orientation, is a gene which is predicted to encode a protein that exhibits remarkable sequence similarity to the alpha subunit of propionyl-CoA carboxylase (EC 6.4.1.3). A mutation in this gene did not affect ability to grow on 3-hydroxybutyrate as sole carbon source. Downstream of, and oriented towards bhbA, was identified a member of the GNTR class of transcriptional regulator-encoding genes. It is not yet known whether this regulatory protein is directly involved in modulation of bhbA expression.


Assuntos
Metilmalonil-CoA Mutase/genética , Metilmalonil-CoA Mutase/metabolismo , Sinorhizobium meliloti/enzimologia , Ácido 3-Hidroxibutírico/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Carboxiliases/genética , Carboxiliases/metabolismo , Clonagem Molecular , Elementos de DNA Transponíveis , Regulação Bacteriana da Expressão Gênica , Metilmalonil-CoA Descarboxilase , Dados de Sequência Molecular , Mutagênese , Análise de Sequência de DNA , Sinorhizobium meliloti/genética , Sinorhizobium meliloti/metabolismo
16.
Gene ; 210(2): 211-9, 1998 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-9573367

RESUMO

Cellobiose dehydrogenase (CDH) is an enzyme produced under lignocellulose-degrading conditions by Trametes versicolor strain 52J (Tv) and several other wood-degrading fungi, including Phanerochaete chrysosporium (Pc). In order to understand better the nature and properties of this enzyme, we isolated a genomic clone of Tv cdh using heterologous probes derived from the sequence of Pc cdh. DNA sequence analysis revealed that Tv cdh consists of 3091 bp of coding sequence interrupted by 14 introns. Southern blotting showed that the gene was present in a single copy in the strain of Tv analyzed. Tv cdh was shown by Northern blot analysis to be expressed as a single transcript under cellulolytic conditions. RT-PCR of poly(A)+ RNA isolated under cellulolytic conditions was used to generate a near full-length cDNA copy of the cdh mRNA. The deduced protein encoded by Tv cdh consists of 768 amino acids (aa), including a predicted 19 aa signal peptide. The protein had 73% identity to the corresponding protein from Pc, which is the only other CDH-encoding gene that has been cloned. Based upon its deduced primary structure and alignment to similar sequences, Tv CDH shares a general structural organization with Pc CDH and other hemoflavoenzymes. Amino acid residues H-109 and M-61 in the N-terminal heme domain are hypothesized to function in heme binding; the C-terminal flavin domain contained a consensus sequence for flavin binding between residues 217-222. Although the protein is known to bind to cellulose, no obvious homology to bacterial or fungal cellulose binding domains was observed. However, a strong homology was observed to a region of Pc CDH that is hypothesized to be involved in cellulose binding.


Assuntos
Basidiomycota/enzimologia , Desidrogenases de Carboidrato/genética , Genes Fúngicos , Sequência de Aminoácidos , Sequência de Bases , Basidiomycota/genética , Desidrogenases de Carboidrato/metabolismo , Clonagem Molecular , DNA Fúngico , Expressão Gênica , Dados de Sequência Molecular , Análise de Sequência de DNA
17.
FEMS Microbiol Lett ; 182(1): 41-4, 2000 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-10612728

RESUMO

Sinorhizobium meliloti 1021 responds to external biotin signals from alfalfa plants through the bioS regulatory locus. Immunogold labeling and electron microscopy revealed that the BioS protein is located within the S. meliloti cytoplasm. Under biotin-limiting conditions the S. meliloti cell lumen was filled with polyhydroxybutyrate (PHB) granules suggesting that either PHB synthesis or degradation are influenced by biotin. To test this hypothesis a 3-hydroxybutyrate-dehydrogenase-lacZ (bdhA-lacZ) fusion was mobilized into S. meliloti. beta-galactosidase tests revealed an overall 3.6-5.2-fold higher bdhA transcription in the presence of added biotin. Comparison of the bdhA and the bioS promoter regions identified several common motifs.


Assuntos
Proteínas de Bactérias/genética , Biotina/metabolismo , Regulação Bacteriana da Expressão Gênica , Hidroxibutirato Desidrogenase/genética , Sinorhizobium meliloti/genética , Transcrição Gênica , Proteínas de Bactérias/análise , Sequência de Bases , Biotina/genética , Meios de Cultura , Hidroxibutirato Desidrogenase/metabolismo , Hidroxibutiratos/metabolismo , Medicago sativa/microbiologia , Dados de Sequência Molecular , Regiões Promotoras Genéticas/genética , Proteínas Recombinantes de Fusão/metabolismo , Sinorhizobium meliloti/crescimento & desenvolvimento , Sinorhizobium meliloti/metabolismo
18.
mBio ; 5(4): e01157-14, 2014 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-25028422

RESUMO

Soil microbial diversity represents the largest global reservoir of novel microorganisms and enzymes. In this study, we coupled functional metagenomics and DNA stable-isotope probing (DNA-SIP) using multiple plant-derived carbon substrates and diverse soils to characterize active soil bacterial communities and their glycoside hydrolase genes, which have value for industrial applications. We incubated samples from three disparate Canadian soils (tundra, temperate rainforest, and agricultural) with five native carbon ((12)C) or stable-isotope-labeled ((13)C) carbohydrates (glucose, cellobiose, xylose, arabinose, and cellulose). Indicator species analysis revealed high specificity and fidelity for many uncultured and unclassified bacterial taxa in the heavy DNA for all soils and substrates. Among characterized taxa, Actinomycetales (Salinibacterium), Rhizobiales (Devosia), Rhodospirillales (Telmatospirillum), and Caulobacterales (Phenylobacterium and Asticcacaulis) were bacterial indicator species for the heavy substrates and soils tested. Both Actinomycetales and Caulobacterales (Phenylobacterium) were associated with metabolism of cellulose, and Alphaproteobacteria were associated with the metabolism of arabinose; members of the order Rhizobiales were strongly associated with the metabolism of xylose. Annotated metagenomic data suggested diverse glycoside hydrolase gene representation within the pooled heavy DNA. By screening 2,876 cloned fragments derived from the (13)C-labeled DNA isolated from soils incubated with cellulose, we demonstrate the power of combining DNA-SIP, multiple-displacement amplification (MDA), and functional metagenomics by efficiently isolating multiple clones with activity on carboxymethyl cellulose and fluorogenic proxy substrates for carbohydrate-active enzymes. Importance: The ability to identify genes based on function, instead of sequence homology, allows the discovery of genes that would not be identified through sequence alone. This is arguably the most powerful application of metagenomics for the recovery of novel genes and a natural partner of the stable-isotope-probing approach for targeting active-yet-uncultured microorganisms. We expanded on previous efforts to combine stable-isotope probing and metagenomics, enriching microorganisms from multiple soils that were active in degrading plant-derived carbohydrates, followed by construction of a cellulose-based metagenomic library and recovery of glycoside hydrolases through functional metagenomics. The major advance of our study was the discovery of active-yet-uncultivated soil microorganisms and enrichment of their glycoside hydrolases. We recovered positive cosmid clones in a higher frequency than would be expected with direct metagenomic analysis of soil DNA. This study has generated an invaluable metagenomic resource that future research will exploit for genetic and enzymatic potential.


Assuntos
Marcação por Isótopo/métodos , Metagenômica/métodos , Microbiologia do Solo , Actinomycetales/classificação , Actinomycetales/genética , Caulobacteraceae/efeitos dos fármacos , Caulobacteraceae/genética , Dados de Sequência Molecular , Rhodospirillales/classificação , Rhodospirillales/genética
19.
Addict Behav ; 38(10): 2619-23, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23851391

RESUMO

AIMS: The present study investigates one-year incidence of mortality from suicide and other causes among heroin users in Taiwan. DESIGN: A prospective national register-based cohort study. SETTING: All heroin users who attended the methadone maintenance treatment (MMT) programs in all treatment centers in Taiwan. PARTICIPANTS: The sample comprised 10,842 heroin users attending MMT. Between Jan 2006 and Dec 2007, cases were identified through the multiple-center register system and followed until Dec 2008 for date and cause of death on the Taiwan national mortality database. MEASUREMENTS: Standardized mortality ratios within one year of starting MMT were calculated as a ratio of actual versus expected numbers of deaths in the general population in Taiwan. Cox regression models were fitted to estimate the effects of gender, age, education and marital status as well as heroin related behaviors. FINDINGS: In total, 256 cases died, 67 through suicide. The mortality rate (per 100 person-years) in the first year of all-cause and suicide was 1.71 and 0.45 respectively, representing 7.5- and 18.4-fold age- and gender-standardized mortality ratio (SMR) compared to the general population. Besides, the mortality rate in the first year of overdoses, murder, HIV, somatic was 0.19, 0.02, 0.07, and 0.75 respectively, representing 68.4-, 27.7-, 76.8-, and 4.3-fold SMR increases to the general population. Older age and unemployment were independent risk factors for mortality. Females had higher standardized mortality ratio than males for suicide and all-cause mortality. CONCLUSIONS: Results showed higher risk of suicide and other-cause mortality among heroin users in MMT than general population. Suicide is an important contributor to overall excess mortality among heroin users in MMT, and especially among women. Suicide prevention and physical health monitoring are important components of MMT programs.


Assuntos
Causas de Morte , Dependência de Heroína/mortalidade , Sistema de Registros/estatística & dados numéricos , Suicídio/estatística & dados numéricos , Adulto , Distribuição por Idade , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Tratamento de Substituição de Opiáceos , Modelos de Riscos Proporcionais , Estudos Prospectivos , Distribuição por Sexo , Centros de Tratamento de Abuso de Substâncias/estatística & dados numéricos , Taiwan/epidemiologia
20.
Kaohsiung J Med Sci ; 29(12): 673-9, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24296056

RESUMO

We investigated the prevalence and correlated factors of human immunodeficiency virus (HIV) among heroin users attending methadone maintenance treatment (MMT) programs in Central Taiwan, and explored the degree of risk perception of HIV infection among the participants. Our study participants were 781 heroin users seeking treatment at the MMT program at Tsaotun Psychiatric Center in Taiwan. The presence of HIV antibodies was identified by microparticle enzyme immunoassay and confirmed by western blot. Multivariate logistic regression was used to identify the independent correlates of HIV infection. The mean age of the sample was 36.1 years [standard deviation (SD) = 7.6]; of the patients, 710 (90.9%) were men. The prevalence of HIV infection among our study population was 20.7%. Multivariate logistic regression analysis revealed that HIV infection was independently associated with the age of the patients of initial heroin use, heroin injection use, nondrug-related criminal convictions, needle-sharing behaviors, and sharing injection paraphernalia. A strong agreement existed between self-reported HIV serostatus and the results of laboratory analyses, with 88.8% of patients reporting their condition correctly. We found a high rate of HIV infection among patients in the MMT program. Factors associated with HIV infection were mostly related to drug-use behaviors. These findings stress the importance of education regarding drug-risk behaviors.


Assuntos
Infecções por HIV/epidemiologia , Heroína/efeitos adversos , Transtornos Relacionados ao Uso de Opioides/complicações , Adulto , Western Blotting , Feminino , Anticorpos Anti-HIV/sangue , Infecções por HIV/complicações , Humanos , Técnicas Imunoenzimáticas , Masculino , Prevalência , Taiwan/epidemiologia
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