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1.
Dermatology ; 239(4): 533-541, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37088073

RESUMO

Androgenetic alopecia (AGA) is the most common type of hair loss and features progressive miniaturization of hair follicles. Generally, the occurrence of AGA has long been thought to be driven by genetic and androgen predisposition. However, increasingly, data proposed ageing and AGA are intimately linked. Elevated senescent cell burden and androgen and oxidative stress-induced senescence mechanisms in ageing may be initial targets to improve AGA. This review summarizes the biological links between ageing and AGA, with special focus on cellular senescence. In addition, we discuss the potential therapeutic strategies for improving cellular senescence in AGA, such as inhibiting dermal papilla cells and hair follicle stem cells senescence driven by androgen and reactive oxygen species, removing senescent cell, and reducing senescence-associated secretory phenotype (SASP).


Assuntos
Alopecia , Androgênios , Humanos , Androgênios/metabolismo , Androgênios/farmacologia , Alopecia/genética , Folículo Piloso , Senescência Celular/genética , Estresse Oxidativo
2.
Int J Mol Sci ; 24(19)2023 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-37834114

RESUMO

The interaction between soil microbes and plants has a significant effect on soil microbial structure and function, as well as plant adaptability. However, the effect of soil micro-organisms on ecological adaption and rapid growth of woody bamboos remains unclear. Here, 16S rRNA and ITS rRNA genes of rhizosphere micro-organisms were sequenced, and the soil properties of three different types of Dendrocalamus sinicus were determined at the dormancy and germination stages of rhizome buds. The result showed that each type of D. sinicus preferred to absorb ammonia nitrogen (NH4+-N) rather than nitrate nitrogen (NO3--N) and required more NH4+-N at germination or rapid growth period than during the dormancy period. In total, nitrogen fixation capacity of soil bacteria in the straight type was significantly higher than that in the introduced straight type, while the ureolysis capacity had an opposite trend. Saprophytic fungi were the dominant fungal functional taxa in habitat soils of both straight and introduced straight type. Our findings are of great significance in understanding how soil microbes affect growth and adaptation of woody bamboos, but also for soil management of bamboo forests in red soil.


Assuntos
Rizosfera , Solo , Solo/química , Nitrogênio , RNA Ribossômico 16S/genética , Bactérias/genética , Plantas/genética , Microbiologia do Solo
3.
Dermatol Ther ; 35(3): e15288, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-34962033

RESUMO

The disordered skin microbiome has been reported to contribute to the pathogenesis of acne vulgaris, for which benzoyl peroxide (BPO) has long been recommended as the first-line therapy. However, there are no data regarding the effect of BPO treatment on skin microbiota and the epidermal barrier in young adults with acne vulgaris. Thirty-three patients with acne vulgaris and 19 healthy controls were enrolled in the study. All patients received topical treatment with BPO 5% gel for 12 weeks. The epidermal barrier was analyzed at baseline and after treatment. Microbial diversity was analyzed using a high-throughput sequencing approach targeting the V3-V4 region of 16S rRNA genes. After receiving treatment with BPO, patients had significant improvement in their Global Acne Grading System (GAGS) score, porphyrin, and red areas (p < 0.05), and the presence of sebum, stratum corneum hydration (SCH), and transepidermal water loss (TEWL) increased (p < 0.05). When compared with baseline, microbial diversity was significantly reduced after treatment, as calculated by the goods coverage (p = 0.0017), Shannon (p = 0.0094), and Simpson (p = 0.0017) diversity indices. The prevalence of the genus Cutibacterium (before treatment: 5.64 [3.50, 7.78] vs. after treatment: 2.43 [1.81, 3.05], p = 0.011) was significantly reduced after treatment while Staphylococcus (before treatment: 43.80 [36.62, 50.98] vs. after treatment: 53.38 [44.88, 61.87], p = 0.075) tended to increase. The abundance of Staphylococcus was negatively associated with SCH (p = 0.008, r = -0.286). Despite its contribution to an improved GAGS score, BPO treatment for acne vulgaris may reduce microbial diversity and damage the epidermal barrier.


Assuntos
Acne Vulgar , Fármacos Dermatológicos , Microbiota , Acne Vulgar/patologia , Peróxido de Benzoíla/uso terapêutico , Fármacos Dermatológicos/efeitos adversos , Combinação de Medicamentos , Géis , Humanos , RNA Ribossômico 16S , Resultado do Tratamento , Adulto Jovem
4.
Lasers Surg Med ; 53(10): 1348-1355, 2021 12.
Artigo em Inglês | MEDLINE | ID: mdl-34224604

RESUMO

BACKGROUND AND OBJECTIVES: The skin microbiota partly determined by epidermal barrier plays an important role in acne vulgaris and intense pulsed light (IPL) has been verified as a safe and effective therapeutic option for this disease. Nevertheless, the exact role of the IPL treatment on the skin microbiota and epidermal barrier for patients with acne vulgaris remains unclear. This article was designed to solve this problem. STUDY DESIGN/MATERIALS AND METHODS: Nineteen healthy controls and 20 patients with mild to moderate acne were enrolled in this study, who received IPL treatment for 12 weeks. The epidermal barrier and skin samples were collected at baseline and after treatment. The microbial diversity was analyzed based on a high-throughput sequencing approach, which targets the V3-V4 region of the bacteria 16S ribosomal RNA genes. RESULTS: After treatment of IPL, the Global Acne Grading System (GAGS) scores, sebum, sclererythrin, and red area of patients were significantly improved by IPL treatment (P < 0.05). Although there was no difference in microbiota diversity before and after IPL treatment, the Nonmetric Multidimension Scaling (NMDS) analysis showed that the samples of the acne patients before and after treatment could be divided into two different sets by skin microbiota (P = 0.011), which could be verified by heatmap analysis. Moreover, we found that the relative abundance of Staphylococcus epidermidis (S. epidermidis) significantly increased, but Cutibacterium acnes (C. acnes) decreased after IPL treatment. The sebum concentration was positively correlated with PH value (R = 0.525, P = 0.017), and the GAGS was positively associated with both sclererythrin (R = 0.477, P = 0.002) and red area (R = -0.503, P = 0.001). CONCLUSIONS: IPL could successfully improve the GAGS scores of acne vulgaris, as well as regulate the equilibrium between C. acnes and S. epidermidis, and inhibit the sebum secretion. Lasers Surg. Med. © 2021 The Authors. Lasers in Surgery and Medicine published by Wiley Periodicals LLC.


Assuntos
Acne Vulgar , Microbiota , Acne Vulgar/terapia , Epiderme , Humanos , Propionibacterium acnes , Pele
5.
BMC Plant Biol ; 19(1): 418, 2019 Oct 11.
Artigo em Inglês | MEDLINE | ID: mdl-31604418

RESUMO

BACKGROUND: So far, little is known in detail about mating systems of woody bamboos. Paternity analysis of offspring improved our understanding of these systems, and contributed to their germplasm conservation and genetic improvement. RESULTS: In this study, a paternity analysis of offspring from two consecutive mass or sporadically flowering events of Dendrocalamus membranaceus and D. sinicus were conducted to determine their mating system and pollen dispersal using the program COLONY based on simple sequence repeat (SSR) markers. Two sporadically flowering populations of D. sinicus (C1, C2) obtained relatively high paternity assignments rates (69.0-71.4%). Meanwhile, among three populations of D. membranaceus, the sporadically flowering population A also had much higher paternity assignments rates (56.4%) than mass flowering populations B1(28.6%) and B2 (42.5%). Both D. membranaceus and D. sinicus had mixed mating systems while their mating patterns were variable depending on pollination conditions. The maximum pollen dispersal distances were 90 m and 4378 m for D. membranaceus and D. sinicus populations, respectively, and the mating distances of these two species focused on ranges of ca. 0-50 m and 0-1500 m, respectively. CONCLUSIONS: These results revealed for the first time variable mating patterns in woody bamboos. This suggests half-sib seeds from the same bamboo clump may have different male parents and it is crucial to clarify genetic origin in woody bamboos' breeding programs. The results also indicate the importance of pollinators in the mating systems of tropical woody bamboos.


Assuntos
Poaceae/fisiologia , Polinização , Marcadores Genéticos , Repetições de Microssatélites , Poaceae/genética , Reprodução/genética , Especificidade da Espécie
6.
Mol Biol Rep ; 46(2): 1625-1634, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30690658

RESUMO

Auxin is an important hormone in many plant developmental processes. In this study, the auxin/indole acetic acid (Aux/IAA) gene family was comprehensively identified using Dendrocalamus sinicus transcriptome data. A total of 26 Aux/IAA genes (DsIAA1-DsIAA26) were mined using four conserved Aux/IAA family motifs (PF02309). They encoded hydrophilic proteins, including one or two nuclear localisation signals. The D. sinicus Aux/IAA proteins were classified into two groups, including seven sister-gene pairs based on their phylogenetic relationships. A phylogenetic tree generated by aligning 108 predicted protein sequences of 26 DsIAAs, 43 PhIAAs (Phyllostachys heterocycla), 29 AtIAAs (Arabidopsis), 31 OsIAAs (Oryza sativa) and 22 PtIAAs (Populus) revealed nine major groups. Among them, four groups, including 96 IAA proteins of all five species, suggested that the genes originated before divergence of monocots and dicots. The expression profiling in different tissues showed that most of the DsIAAs preferentially expressed in leaves and shoots, suggesting their important roles in the development of leaves and shoots in D. sinicus. Continuously high expression of DsIAA3, DsIAA4, DsIAA15, and DsIAA20 may be important for regulating shoot development in D. sinicus. These results provide useful information for further research into the function of Aux/IAA genes in woody sympodial bamboos.


Assuntos
Reguladores de Crescimento de Plantas/genética , Reguladores de Crescimento de Plantas/metabolismo , Sasa/genética , Sequência de Aminoácidos , Perfilação da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Ácidos Indolacéticos/metabolismo , Filogenia , Proteínas de Plantas/genética , Poaceae/genética , Transcriptoma/genética
7.
BMC Plant Biol ; 18(1): 323, 2018 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-30509158

RESUMO

BACKGROUND: Observations of precocious (early bearing) genotypes of walnut (Juglans regia L.) under natural conditions encouraged us to study the origin and genetic control of these fascinating traits. RESULTS: In this study, the self-fertility, progeny performance, and simple sequence repeat (SSR) locus variation of iron walnut (Juglans sigillata Dode), an ecotype of J. regia, were investigated. The average self-pollinated fruit set rate of J. sigillata cv. 'Dapao' (DP) was 7.0% annually from 1979 to 1982. The average germination rate of self-pollinated seeds was 45.2% during the 4-year period. Most progeny had inbreeding depression. Nine representative self-pollinated progeny (SP1-SP9), with special or typical traits of DP, were selected. SP1-SP4 were precocious because they initiated flowers as early as 2 years after germination, compared to the 7-10-yr period that is typical of DP. SP9 had not flowered since 1980. Twelve SSR markers were used to analyze the SP and DP. The genome of SP had a tendency toward high levels of homozygosity. The high levels of homozygosity reported in 18 additional precocious walnut genotypes complemented the results of this study. CONCLUSIONS: These results provide evidence of precocious phenotypes and genomes with high levels of homozygosity that might be generated from self-pollinating walnut. This suggests that self-pollination might facilitate the generation of unique homozygous parents for subsequent use in walnut-breeding programs. The results also indicate that more attention should be focused on adequate management of precocious walnut to avoid early depression in the production of nuts.


Assuntos
Homozigoto , Juglans/genética , Polinização/genética , Estudos de Associação Genética , Genótipo , Juglans/fisiologia , Repetições de Microssatélites/genética , Polinização/fisiologia , Autoincompatibilidade em Angiospermas/genética
8.
Comput Biol Med ; 168: 107719, 2024 01.
Artigo em Inglês | MEDLINE | ID: mdl-38007976

RESUMO

Multilayer perceptron (MLP) networks have become a popular alternative to convolutional neural networks and transformers because of fewer parameters. However, existing MLP-based models improve performance by increasing model depth, which adds computational complexity when processing local features of images. To meet this challenge, we propose MSS-UNet, a lightweight convolutional neural network (CNN) and MLP model for the automated segmentation of skin lesions from dermoscopic images. Specifically, MSS-UNet first uses the convolutional module to extract local information, which is essential for precisely segmenting the skin lesion. We propose an efficient double-spatial-shift MLP module, named DSS-MLP, which enhances the vanilla MLP by enabling communication between different spatial locations through double spatial shifts. We also propose a module named MSSEA with multiple spatial shifts of different strides and lighter external attention to enlarge the local receptive field and capture the boundary continuity of skin lesions. We extensively evaluated the MSS-UNet on ISIC 2017, 2018, and PH2 skin lesion datasets. On three datasets, the method achieves IoU metrics of 85.01%±0.65, 83.65%±1.05, and 92.71%±1.03, with a parameter size and computational complexity of 0.33M and 15.98G, respectively, outperforming most state-of-the-art methods.The code is publicly available at https://github.com/AirZWH/MSS-UNet.


Assuntos
Benchmarking , Dermatopatias , Humanos , Redes Neurais de Computação , Dermatopatias/diagnóstico por imagem , Processamento de Imagem Assistida por Computador
9.
Autoimmunity ; 57(1): 2297564, 2024 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-38155490

RESUMO

Recurrent spontaneous abortions (RSA) affect reproductive health and increase the risk of subsequent abortions. To investigate the role of KISS-1/GPR-54 signaling in RSA progression. Villus tissue was collected from RSA patients, and human trophoblastic HTR-8/SVneo cells were used. KISS-1 and GRP54 levels were detected using RT-qPCR and immunohistochemistry. Western blotting was performed to analyze ZO-1 and ZEB1 levels. Cell proliferation was determined via CCK-8 and cell clone formation assays. Transwell assays were performed to assess cell migration and invasion abilities. KISS-1 was down-regulated in the villus tissues of RSA patients. KISS-1 overexpression dramatically inhibited trophoblast proliferation, migration, and invasion. Mechanistically, ZEB1 expression was down-regulated, whereas ZO-1 expression was up-regulated, after KISS-1 overexpression. GPR54 silencing neutralized the effect of KISS-1 in HTR-8/SVneo cells. Additionally, KISS-1 overexpression inactivated the PI3K/AKT signaling pathway through GRP54. The KISS-1/GPR-54 signaling axis regulates RSA progression by regulating the PI3K/AKT signaling pathway.


Assuntos
Pré-Eclâmpsia , Proteínas Proto-Oncogênicas c-akt , Feminino , Humanos , Gravidez , Movimento Celular/genética , Proliferação de Células , Kisspeptinas/genética , Kisspeptinas/metabolismo , Fosfatidilinositol 3-Quinases/metabolismo , Pré-Eclâmpsia/metabolismo , Transdução de Sinais
10.
J Dermatolog Treat ; 35(1): 2299107, 2024 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-38164791

RESUMO

Objectives:We aimed to explore the potential role of omega-3 (ω-3) fatty acids on acne vulgaris by modulating gut microbiota.Materials and Methods:We randomly divided the untreated acne patients into two groups with or without ω-3 fatty acids intervention for 12 weeks. The Sprague Dawley (SD) rats with acne model were given isotretinoin, ω-3 fatty acids or their combination respectively. Then the colonic contents samples of the drug intervention SD rats were transferred to the pseudo sterile rats with acne model. The severity of the disease was assessed by the Global Acne Grading System (GAGS) score of the patients, and the swelling rate of auricle and the pathological section of the rat with acne model. The 16S rDNA gene sequencing was performed to detect the alteration of the gut microbiota.Results:ω-3 fatty acids could increase the diversity of the gut microbiota and regulate the flora structure positively both in the patients and rats, increase the abundance of butyric acid producing bacteria and GAGS score in the patients, and alleviate the inflammation and comedones of rats.Conclusion:Supplementation of ω-3 fatty acids could alleviate the inflammation of acne vulgaris by increasing the abundance of butyric acid producing bacteria.


Assuntos
Acne Vulgar , Ácidos Graxos Ômega-3 , Microbioma Gastrointestinal , Animais , Humanos , Ratos , Acne Vulgar/microbiologia , Adjuvantes Imunológicos , Butiratos/uso terapêutico , Ácidos Graxos Ômega-3/farmacologia , Ácidos Graxos Ômega-3/uso terapêutico , Inflamação/tratamento farmacológico , Ratos Sprague-Dawley
11.
Med Phys ; 50(7): 4269-4281, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-36636813

RESUMO

BACKGROUND: Semi-supervised learning is becoming an effective solution for medical image segmentation because of the lack of a large amount of labeled data. PURPOSE: Consistency-based strategy is widely used in semi-supervised learning. However, it is still a challenging problem because of the coupling of CNN-based isomorphic models. In this study, we propose a new semi-supervised medical image segmentation network (DRS-Net) based on a dual-regularization scheme to address this challenge. METHODS: The proposed model consists of a CNN and a multidecoder hybrid Transformer, which adopts two regularization schemes to extract more generalized representations for unlabeled data. Considering the difference in learning paradigm, we introduce the cross-guidance between CNN and hybrid Transformer, which uses the pseudo label output from one model to supervise the other model better to excavate valid representations from unlabeled data. In addition, we use feature-level consistency regularization to effectively improve the feature extraction performance. We apply different perturbations to the feature maps output from the hybrid Transformer encoder and keep an invariance of the predictions to enhance the encoder's representations. RESULTS: We have extensively evaluated our approach on three typical medical image datasets, including CT slices from Spleen, MRI slices from the Heart, and FM Nuclei. We compare DRS-Net with state-of-the-art methods, and experiment results show that DRS-Net performs better on the Spleen dataset, where the dice similarity coefficient increased by about 3.5%. The experimental results on the Heart and Nuclei datasets show that DRS-Net also improves the segmentation effect of the two datasets. CONCLUSIONS: The proposed DRS-Net enhances the segmentation performance of the datasets with three different medical modalities, where the dual-regularization scheme extracts more generalized representations and solves the overfitting problem.


Assuntos
Núcleo Celular , Coração , Baço , Aprendizado de Máquina Supervisionado , Processamento de Imagem Assistida por Computador
12.
Plant Physiol Biochem ; 201: 107827, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-37329689

RESUMO

Woody bamboos are important resource of industrial fibres. Auxin signaling plays a key role in multiple plant developmental processes, as yet the role of auxin/indole acetic acid (Aux/IAA) in culm development of woody bamboos has not been previously characterized. Dendrocalamus sinicus Chia et J. L. Sun is the largest woody bamboo documented in the world. Here, we identified two alleles of DsIAA21 gene (sIAA21 and bIAA21) from the straight- and bent-culm variants of D. sinicus, respectively, and studied how the domains I, i, and II of DsIAA21 affect the gene transcriptional repression. The results showed that bIAA21 expression was rapidly induced by exogenous auxin in D. sinicus. In transgenic tobacco, sIAA21 and bIAA21 mutated in domains i, and II significantly regulated plant architecture and root development. Stem cross sections revealed that parenchyma cells were smaller in transgenic plants than that in wild type plants. Domain i mutation changed the leucine and proline at position 45 to proline and leucine (siaa21L45P and biaa21P45L) strongly repressed cell expansion and root elongation by reducing the gravitropic response. Substitution of isoleucine with valine in domain II of the full length DsIAA21 resulted in dwarf stature in transgenic tobacco plants. Furthermore, the DsIAA21 interacted with auxin response factor 5 (ARF5) in transgenic tobacco plants, suggesting that DsIAA21 might inhibit stem and root elongation via interacting with ARF5. Taken together, our data indicated that DsIAA21 was a negative regulator of plant development and suggested that amino acid differences in domain i of sIAA21 versus bIAA21 affected their response to auxin, and might play a key role in the formation of the bent culm variant in D. sinicus. Our results not only shed a light on the morphogenetic mechanism in D. sinicus, but also provided new insights into versatile function of Aux/IAAs in plants.


Assuntos
Fator V , Nicotiana , Nicotiana/genética , Nicotiana/metabolismo , Fator V/genética , Fator V/metabolismo , Leucina/genética , Leucina/metabolismo , Ácidos Indolacéticos/metabolismo , Mutação/genética , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo , Regulação da Expressão Gênica de Plantas
13.
Front Immunol ; 14: 1300378, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38318507

RESUMO

Atopic dermatitis (AD) is a common chronic relapsing inflammatory skin disease, of which the pathogenesis is a complex interplay between genetics and environment. Although the exact mechanisms of the disease pathogenesis remain unclear, the immune dysregulation primarily involving the Th2 inflammatory pathway and accompanied with an imbalance of multiple immune cells is considered as one of the critical etiologies of AD. Tryptophan metabolism has long been firmly established as a key regulator of immune cells and then affect the occurrence and development of many immune and inflammatory diseases. But the relationship between tryptophan metabolism and the pathogenesis of AD has not been profoundly discussed throughout the literatures. Therefore, this review is conducted to discuss the relationship between tryptophan metabolism and the complex network of skin inflammatory response in AD, which is important to elucidate its complex pathophysiological mechanisms, and then lead to the development of new therapeutic strategies and drugs for the treatment of this frequently relapsing disease.


Assuntos
Dermatite Atópica , Humanos , Triptofano/metabolismo , Pele
14.
Med Biol Eng Comput ; 61(3): 661-671, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36580181

RESUMO

Medical image segmentation is a critical step in many imaging applications. Automatic segmentation has gained extensive concern using a convolutional neural network (CNN). However, the traditional CNN-based methods fail to extract global and long-range contextual information due to local convolution operation. Transformer overcomes the limitation of CNN-based models. Inspired by the success of transformers in computer vision (CV), many researchers focus on designing the transformer-based U-shaped method in medical image segmentation. The transformer-based approach cannot effectively capture the fine-grained details. This paper proposes a dual encoder network with transformer-CNN for multi-organ segmentation. The new segmentation framework takes full advantage of CNN and transformer to enhance the segmentation accuracy. The Swin-transformer encoder extracts global information, and the CNN encoder captures local information. We introduce fusion modules to fuse convolutional features and the sequence of features from the transformer. Feature fusion is concatenated through the skip connection to smooth the decision boundary effectively. We extensively evaluate our method on the synapse multi-organ CT dataset and the automated cardiac diagnosis challenge (ACDC) dataset. The results demonstrate that the proposed method achieves Dice similarity coefficient (DSC) metrics of 80.68% and 91.12% on the synapse multi-organ CT and ACDC datasets, respectively. We perform the ablation studies on the ACDC dataset, demonstrating the effectiveness of critical components of our method. Our results match the ground-truth boundary more consistently than the existing models. Our approach gains more accurate results on challenging 2D images for multi-organ segmentation. Compared with the state-of-the-art methods, our proposed method achieves superior performance in multi-organ segmentation tasks. Graphical Abstract The key process in medical image segmentation.


Assuntos
Benchmarking , Fontes de Energia Elétrica , Coração , Redes Neurais de Computação , Sinapses , Processamento de Imagem Assistida por Computador
15.
PeerJ ; 10: e13847, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35935247

RESUMO

Climate change will significantly affect the distribution area of species. Through establishing distribution model, we can simulate the current and future potential distribution range and provide reference for the introduction and cultivation planning of rare or economic plants. Dendrocalamus sinicus, endemic to Yunnan Province of China, is the strongest woody bamboo in the world. In the present study, the MaxEnt model was performed to simulate the distribution of different types of D. sinicus in China and neighboring countries or regions. The results suggested that the suitable distribution range of "straight type", the main type for cultivation and utilization, was 8°-30°N and 73°-122°E under the current climate conditions, while the potential distribution range of "bending type" was 6°-31°N and 79°-109°E. The two most key climate variables associated with distribution of "straight type" were "Temperature Annual Range" with 36.6% contribution rate and "Temperature Seasonality" (32.4%), while "Isothermality" (47.8%) and "Precipitation of Driest Month" (24.8%) for "bending type". Under different climate change scenarios (SSP1-2.6, SSP5-8.5) and periods (2050, 2090), the potential distribution area of the "straight type" were apparently different, indicating that the distribution area of D. sinicus will be affected significantly by climate changes in the future. Our findings would be not only beneficial to understanding limiting factors for natural distribution of D. sinicus, but also helpful for further germplasm conservation, introduction and cultivation planning of this rare woody bamboo.


Assuntos
Mudança Climática , Madeira , China , Temperatura , Previsões
16.
Int J Food Microbiol ; 363: 109493, 2022 Feb 16.
Artigo em Inglês | MEDLINE | ID: mdl-34953345

RESUMO

Traditional fermented foods are usually produced by spontaneous fermentation with multiple microorganisms. Environmental factors play important roles in microbial succession. However, it is still unclear how the processing parameters regulate the microbiota during fermentation. Here, we reveal the effects of processing parameters on the core microbiota in spontaneous fermentation of Chinese liquor starter. Rhizopus, Pichia, Wickerhamomyces, Saccharomycopsis, Aspergillus and Saccharomyces were identified as core microbiota using amplicon sequencing and metaproteomics analysis. Fermentation moisture gradually decreased from 34.8% to 14.2%, and fermentation temperature varied between 17.0 °C and 35.3 °C during the fermentation. Mantel test showed that fermentation moisture (P < 0.001) and fermentation temperature (P < 0.05) significantly affected the core microbiota. Moreover, structural equation modelling analysis indicated that fermentation moisture (P < 0.001) and fermentation temperature (P < 0.001) were respectively influenced by the processing parameters, room humidity and room temperature. The succession of Rhizopus, Pichia, Wickerhamomyces, Saccharomycopsis and Aspergillus were significantly affected by room humidity (P < 0.05), and the succession of Saccharomyces was significantly affected by room temperature (P < 0.001). Further, models were constructed to predict the population of core microbiota by room humidity and room temperature, using Gaussian process regression and linear regression (P < 0.05). This work would be beneficial for regulating microorganisms via controlling processing parameters in spontaneous food fermentations.


Assuntos
Bactérias , Microbiota , Bebidas Alcoólicas/análise , Fermentação , Fungos/genética , Pichia
17.
Phys Med Biol ; 67(17)2022 08 30.
Artigo em Inglês | MEDLINE | ID: mdl-35970179

RESUMO

Objective.A semi-supervised learning method is an essential tool for applying medical image segmentation. However, the existing semi-supervised learning methods rely heavily on the limited labeled data. The generalization performance of image segmentation is improved to reduce the need for the number of labeled samples and the difficulty of parameter tuning by extending the consistency regularization.Approach.We propose a new regularization-driven Mean Teacher model based on semi-supervised learning for medical image segmentation in this work. We introduce a regularization-driven strategy with virtual adversarial training to improve segmentation performance and the robustness of the Mean Teacher model. We optimize the unsupervised loss function and the regularization term with an entropy minimum to smooth the decision boundary.Main results.We extensively evaluate the proposed method on the International Skin Imaging Cooperation 2017(ISIC2017) and COVID-19 CT segmentation datasets. Our proposed approach gains more accurate results on challenging 2D images for semi-supervised medical image segmentation. Compared with the state-of-the-art methods, the proposed approach has significantly improved and is superior to other semi-supervised segmentation methods.Significance.The proposed approach can be extended to other medical segmentation tasks and can reduce the burden of physicians to some extent.


Assuntos
COVID-19 , COVID-19/diagnóstico por imagem , Entropia , Humanos , Processamento de Imagem Assistida por Computador/métodos , Aprendizado de Máquina Supervisionado
18.
Heliyon ; 8(12): e12600, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36593818

RESUMO

Transcription factors (TFs) play indispensable roles in plant development and stress responses. As the largest woody bamboo species in the world, Dendrocalamus sinicus is endemic to Yunnan Province, China, and possesses two natural variants characterized by culm shape, namely straight or bent culms. Understanding the transcriptional regulation network of D. sinicus provides a unique opportunity to clarify the growth and development characteristics of woody bamboos. In this study, 10,236 TF transcripts belonging to 57 families were identified from transcriptome data of two variants at different developmental stages, from which we constructed a transcriptional regulatory network and unigene-coding protein-TFs interactive network of culm development for this attractive species. Gene function enrichment analysis revealed that hormone signaling and MAPK signaling pathways were two most enriched pathways in TF-regulated network. Based on PPI analysis, 50 genes interacting with nine TFs were screened as the core regulation components related to culm development. Of them, 18 synergistic genes of seven TFs, including nuclear cap-binding protein subunit 1, transcription factor GTE9-like, and ATP-dependent DNA helicase DDX11 isoform X1, involved in culm-shape variation. Most of these genes would interact with MYB, C3H, and ARF transcription factors. Six members with two each from ARF, C3H, and MYB transcription factor families and six key interacting genes (IAA3, IAA19, leucine-tRNA ligase, nuclear cap-binding protein subunit 1, elongation factor 2, and coiled-coil domain-containing protein 94) cooperate with these transcription factors were differentially expressed at development stage of young culms, and were validated by quantitative PCR. Our results represent a crucial step towards understanding the regulatory mechanisms of TFs involved in culm development and variation of D. sinicus.

19.
Comput Biol Med ; 151(Pt A): 106306, 2022 12.
Artigo em Inglês | MEDLINE | ID: mdl-36403357

RESUMO

The outbreak of new coronary pneumonia has brought severe health risks to the world. Detection of COVID-19 based on the UNet network has attracted widespread attention in medical image segmentation. However, the traditional UNet model is challenging to capture the long-range dependence of the image due to the limitations of the convolution kernel with a fixed receptive field. The Transformer Encoder overcomes the long-range dependence problem. However, the Transformer-based segmentation approach cannot effectively capture the fine-grained details. We propose a transformer with a double decoder UNet for COVID-19 lesions segmentation to address this challenge, TDD-UNet. We introduce the multi-head self-attention of the Transformer to the UNet encoding layer to extract global context information. The dual decoder structure is used to improve the result of foreground segmentation by predicting the background and applying deep supervision. We performed quantitative analysis and comparison for our proposed method on four public datasets with different modalities, including CT and CXR, to demonstrate its effectiveness and generality in segmenting COVID-19 lesions. We also performed ablation studies on the COVID-19-CT-505 dataset to verify the effectiveness of the key components of our proposed model. The proposed TDD-UNet also achieves higher Dice and Jaccard mean scores and the lowest standard deviation compared to competitors. Our proposed method achieves better segmentation results than other state-of-the-art methods.


Assuntos
COVID-19 , Auxiliares de Comunicação para Pessoas com Deficiência , Humanos , COVID-19/diagnóstico por imagem , Algoritmos , Coração
20.
Front Microbiol ; 13: 942027, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35966699

RESUMO

Acne vulgaris is a chronic inflammatory skin disease in which the influence of gut microbiota has been implicated but without clarification of mechanisms. Gut microbiota may exert such an influence via metabolites, particularly those of tryptophan. End metabolites of tryptophan activate receptors, including aryl hydrocarbon, G protein-coupled, and pregnane X receptors to stabilize the immune microenvironment and intestinal mucosal homeostasis. Any impact on the pathogenesis of acne vulgaris remains unclear. The current review collates recent advances concerning potential roles of tryptophan metabolism in mediating skin inflammation, follicular sebaceous gland function and intestinal permeability, all of which influence the pathogenesis of acne vulgaris. The aim was to improve understanding of the pathogenesis of acne vulgaris and to expose therapeutic opportunities.

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