White sand vegetation in an Amazonian lowland under the perspective of a young geological history.

What controls the formation of patchy substrates of white sand vegetation in the Amazonian lowlands is still unclear. This research integrated the geological history and plant inventories of a white sand vegetation patch confined to one large fan-shaped sandy substrate of northern Amazonia, which is related to a megafan environment. We examined floristic patterns to determine whether abundant species are more often generalists than the rarer one, by comparing the megafan environments and older basement rocks. We also investigated the pattern of species accumulation as a function of increasing sampling effort. All plant groups recorded a high proportion of generalist species on the megafan sediments compared to older basement rocks. The vegetation structure is controlled by topographic gradients resulting from the smooth slope of the megafan morphology and microreliefs imposed by various megafan subenvironments. Late Pleistocene-Holocene environmental disturbances caused by megafan sedimentary processes controlled the distribution of white sand vegetation over a large area of the Amazonian lowlands, and may have also been an important factor in species diversification during this period. The integration of geological and biological data may shed new light on the existence of many patches of white sand vegetation from the plains of northern Amazonia.

Hurricanes are limiting the mangrove canopy heights in the Gulf of Mexico.

Mangrove canopy height (MCH) has been described as a leading characteristic of mangrove forests, protecting coastal economic interests from hurricanes. Meanwhile, winter temperature has been considered the main factor controlling the MCH along subtropical coastlines. However, the MCH in Cedar Key, Florida (∼12 m), is significantly higher than in Port Fourchon, Louisiana (∼2.5 m), even though these two subtropical locations have similar winter temperatures. Port Fourchon has been more frequently impacted by hurricanes than Cedar Key, suggesting that hurricanes may have limited the MCH in Port Fourchon rather than simply winter temperatures. This hypothesis was evaluated using novel high-resolution remote sensing techniques that tracked the MCH changes between 2002 and 2023. Results indicate that hurricanes were the limiting factor keeping the mean MCH at Port Fourchon to <1 m (2002-2013), as the absence of hurricane impacts between 2013 and 2018 allowed the mean MCH to increase by 60 cm despite the winter freezes in Jan/2014 and Jan/2018. Hurricanes Zeta (2020) and Ida (2021) caused a decrease in the mean MCH by 20 cm, breaking branches, defoliating the canopy, and toppling trees. The mean MCH (∼1.6 m) attained before Zeta and Ida has not yet been recovered as of August 2023 (∼1.4 m), suggesting a longer-lasting impact (>4 years) of hurricanes on mangroves than winter freezes (<1 year). The high frequency of hurricanes affecting mangroves at Port Fourchon has acted as a periodic "pruning," particularly of the tallest Avicennia trees, inhibiting their natural growth rates even during quiet periods following hurricane events (e.g., 12 cm/yr, 2013-2018). By contrast, the absence of hurricanes in Cedar Key (2000-2020) has allowed the MCH to reach 12 m (44-50 cm/yr), implying that, besides the winter temperature, the frequency and intensity of hurricanes are important factors limiting the MCH on their latitudinal range limits in the Gulf of Mexico.

A palynological record of mangrove biogeography, coastal geomorphological change, and prehistoric human activities from Cedar Keys, Florida, U.S.A.

Under the continuous warming trend in the 21st century, mangroves are likely to migrate into more temperate regions in North and South America. However, the biogeography of different mangrove species is still unclear, especially near their latitudinal range limits in the two continents. This study utilizes palynological, geochemical, and sedimentological analyses to record changes in the coastal morphology and vegetation during the Holocene in Cedar Keys, Florida, the mangrove sub-range limit in North America. The multi-proxy dataset indicates that the milder winters during the Medieval Climate Anomaly likely facilitated the establishment of mangroves in the study region, where Avicennia, Laguncularia, and Rhizophora were established in the ~12th (790-850 cal yr BP), ~14th (580-660 cal yr BP), and ~ 16th century (440-460 cal yr BP), respectively. Thus, the Medieval Climate Anomaly likely triggered the poleward mangrove migration in North and South America synchronously. Moreover, the multi-proxy dataset also documents the obliteration of the Woodland Culture near Cedar Keys, where a once-thriving native civilization on Seahorse Key was driven out by the European colonizers, who settled on the mainland and Atsena Otie Key. Over time, the relict sites of the Woodland people on Seahorse Key were covered by mangroves and marsh vegetation since the ~16th century. Overall, our dataset suggests that industrial-era warming may have intensified the poleward mangrove expansion, although this trend had started earlier during the Medieval Climate Anomaly.

Pollen atlas and identification dataset from Santa Catarina, south Brazil.

Pollen references such as atlas and identification keys are remarkably rare from the Atlantic coasts of south Brazil. This dataset describes modern and fossil pollen from São Francisco do Sul Bay in the state of Santa Catarina, south Brazil. An illustrated and descriptive atlas of pollen was compiled from original and published data to facilitate the identification of various pollen taxa in sediments. We include light micrographs and descriptions of a total of 60 pollen taxa, including 3 mangrove taxa, 27 coastal woodland (restinga) taxa, and 15 rainforest taxa, and 15 herbaceous taxa. This dataset is associated with a published research article by Rodrigues et al. (2022) - Rodrigues, E., Cohen, M.C.L., Pessenda, L.C.R., França, M.C., Magalhães, E. and Yao, Q., 2022. Poleward mangrove expansion in South America coincides with MCA and CWP: A diatom, pollen, and organic geochemistry study. Quaternary Science Reviews, 288, p.107598.

A timely method for post-disaster assessment and coastal landscape survey using drone and satellite imagery.

To mitigate floods and storm surges, coastal communities across the globe are under the pressure of high-cost interventions, such as coastal barriers, jetties, and renourishment projects, especially in areas prone to hurricanes and other natural disturbances. To evaluate the effectiveness of these coastal projects in a timely fashion, this methodology is supported by a Geographic Information System that is instaneously fed by regional and local data obtained shortly (24 h) after the disturbance event. Our study assesses the application of 3D models based on aerophotogrammetry from a Phantom 4 RTK drone, following a methodological flowchart with three phases. The Digital Elevation Models (DEMs) based on aerophotogrammetry obtained from a Phantom 4 RTK drone presented a low margin of error (± 5 cm) to dispense Ground Control Points. This technique enables a rapid assessment of inaccessible coastal areas due, for instance, to hurricane impacts. Evaluation of DEMs before and after the disturbance event allows quantifying the magnitudes of shoreline retreat, storm surges, difference in coastal sedimentary volumes, and identifying areas where erosion and sediment accretion occur. Orthomosaics permit the individualization and quantification of changes in vegetation units/geomorphological areas and damages to urban and coastal infrastructure. Our experience monitoring coastal dynamics in North and South America during the last decade indicates that this methodology provides an essential data flow for short and long-term decision-making regarding strategies to mitigate disaster impacts.•Permanent and regional monitoring with spatial-temporal analysis based on satellite/aerial images and lidar data prior to the event.•Local DEMs based on drone aerophotogrammetry after the event.•Integration of regional and local planialtimetric/environmental data.

Assessment the Impacts of Sea-Level Changes on Mangroves of Ceará-Mirim Estuary, Northeastern Brazil, during the Holocene and Anthropocene.

Predictions of the effects of modern Relative Sea-Level (RSL) rise on mangroves should be based on decadal-millennial mangrove dynamics and the particularities of each depositional environment under past RSL changes. This work identified inland and seaward mangrove migrations along the Ceará-Mirim estuary (Rio Grande do Norte, northeastern Brazil) during the mid-late Holocene and Anthropocene based on sedimentary features, palynological, and geochemical (δ13C, δ15N, C/N) data integrated with spatial-temporal analysis based on satellite images. The data indicated three phases for the mangrove development: (1°) mangrove expansion on tidal flats with estuarine organic matter between >4420 and ~2870 cal yrs BP, under the influence of the mid-Holocene sea-level highstand; (2°) mangrove contraction with an increased contribution of C3 terrestrial plants between ~2870 and ~84 cal yrs BP due to an RSL fall, and (3°) mangrove expansion onto the highest tidal flats since ~84 cal yr BP due to a relative sea-level rise. However, significant mangrove areas were converted to fish farming before 1984 CE. Spatial-temporal analysis also indicated a mangrove expansion since 1984 CE due to mangrove recolonization of shrimp farming areas previously deforested for pisciculture. This work mainly evidenced a trend of mangrove expansion due to RSL rise preceding the effects of anthropogenic emissions of CO2 in the atmosphere and the resilience of these forests in the face of anthropogenic interventions.

Effect of the explicit flexibility of the InhA enzyme from Mycobacterium tuberculosis in molecular docking simulations.

BACKGROUND: Protein/receptor explicit flexibility has recently become an important feature of molecular docking simulations. Taking the flexibility into account brings the docking simulation closer to the receptors' real behaviour in its natural environment. Several approaches have been developed to address this problem. Among them, modelling the full flexibility as an ensemble of snapshots derived from a molecular dynamics simulation (MD) of the receptor has proved very promising. Despite its potential, however, only a few studies have employed this method to probe its effect in molecular docking simulations. We hereby use ensembles of snapshots obtained from three different MD simulations of the InhA enzyme from M. tuberculosis (Mtb), the wild-type (InhA_wt), InhA_I16T, and InhA_I21V mutants to model their explicit flexibility, and to systematically explore their effect in docking simulations with three different InhA inhibitors, namely, ethionamide (ETH), triclosan (TCL), and pentacyano(isoniazid)ferrate(II) (PIF). RESULTS: The use of fully-flexible receptor (FFR) models of InhA_wt, InhA_I16T, and InhA_I21V mutants in docking simulation with the inhibitors ETH, TCL, and PIF revealed significant differences in the way they interact as compared to the rigid, InhA crystal structure (PDB ID: 1ENY). In the latter, only up to five receptor residues interact with the three different ligands. Conversely, in the FFR models this number grows up to an astonishing 80 different residues. The comparison between the rigid crystal structure and the FFR models showed that the inclusion of explicit flexibility, despite the limitations of the FFR models employed in this study, accounts in a substantial manner to the induced fit expected when a protein/receptor and ligand approach each other to interact in the most favourable manner. CONCLUSIONS: Protein/receptor explicit flexibility, or FFR models, represented as an ensemble of MD simulation snapshots, can lead to a more realistic representation of the induced fit effect expected in the encounter and proper docking of receptors to ligands. The FFR models of InhA explicitly characterizes the overall movements of the amino acid residues in helices, strands, loops, and turns, allowing the ligand to properly accommodate itself in the receptor's binding site. Utilization of the intrinsic flexibility of Mtb's InhA enzyme and its mutants in virtual screening via molecular docking simulation may provide a novel platform to guide the rational or dynamical-structure-based drug design of novel inhibitors for Mtb's InhA. We have produced a short video sequence of each ligand (ETH, TCL and PIF) docked to the FFR models of InhA_wt. These videos are available at http://www.inf.pucrs.br/~osmarns/LABIO/Videos_Cohen_et_al_19_07_2011.htm.

A multi-proxy record of hurricanes, tsunami, and post-disturbance ecosystem changes from coastal southern Baja California.

Tsunamis and hurricanes are two earth surface processes that can dramatically impact coastal landforms and ecosystems. This study uses a combination of palynological, grain-size, X-ray fluorescence, and loss-on-ignition analyses, short-lived isotopic and radiocarbon dating, and statistical analysis to differentiate the tsunami and hurricane deposits, establish a Late-Holocene record of extreme events, and document the landscape and vegetation transformation in response to disturbance events and environmental changes from a small coastal lagoon in Baja California, Mexico. Prior to ~530 cal yr BP, Playa Los Cocos was occupied by a short-hydroperiod tidal marsh bounded by desert vegetation on the surrounding hillslopes. At ~530 cal yr BP, a tsunami created a backbarrier lagoon and introduced mangrove propagules from other coastal localities, and the lagoonal environment and substrates also provided suitable habitats for red mangroves to proliferate. Once established, red mangrove populations rapidly expanded until ~180 cal yr BP, when modern human activities diminished the mangrove forest in our study area. Overall, the multi-proxy dataset revealed four hurricane events at ~770, ~600, ~280, and ~0 cal yr BP, and one tsunami event at ~530 cal yr BP. The hurricane deposits were preserved in the form of fluvial and slope-wash deposits characterized by low organic and water contents, low concentration of marine elements, and high concentration of terrestrial elements. The tsunami run-up deposits are characterized by abundant broken and intact sea shells, high content of carbonate and marine elements, low concentration of terrestrial elements, and sharp basal contact with the underlying sediments. The tsunami backwash deposits are characterized by a mixed physical and chemical signature resembling both marine and terrestrial sediments. Results also suggest that both hurricanes and tsunamis can help propagule dispersal and create suitable coastal habitats favorable for the spread and proliferation of mangroves in a desert coastal environment.

Evaluating enhanced volume rendering visualization of cerebral aneurysms.

The effective visualization of aneurysms is a very important issue in neurosurgery. However it is difficult to display both the aneurysm with sufficient detail, and the vessel network of the brain at the same time. This work offers a solution to both of these problems, applying the concept of focus and context to texture-based volume rendering. A flexible application has been developed, allowing different focus and context techniques to be used. This paper concentrates on the evaluation of the system by a group of neurosurgeons.

Mineralogical and geochemical influences on sediment color of Amazon wetlands analyzed by visible spectrophotometry / Influências mineralógicas e geoquímicas na cor dos sedimentos das zonas úmidas da Amazônia analisada através da espectrofotometria no visível

Based on sedimentological and geochemical data, this work relates spectrophotometric measurements with sediment composition and its application in palaeoecological studies of Amazon wetlands. The CIELAB values are directly related to mineralogical and chemical composition, mostly involving quartz, iron oxyhydroxides and sulfides (e.g. pyrite), and total organic carbon. Total organic carbon contents between 0.4-1%, 1-2%, 3-5% and 15-40% were related to L* (lightness) data of 27, 26-15, 7-10 and 7 or less, respectively. The CIELAB values of a deposit in Marabá, Pará, were proportional to variations in quartz and total organic carbon contents, but changes in zones of similar color, mainly in the +a* (red) and +b* (yellow) values of deposits in Calçoene, Amapá and Soure, Pará, indicate a close relationship between total organic carbon content and iron oxyhydroxides and sulfides. Furthermore, the Q7/4 diagram (ratio between the % re?ectance value at 700 nm to that at 400 nm, coupled with L*) indicated iron-rich sediments in the bioturbated mud facies of the Amapá deposit, bioturbated mud and bioturbated sand facies of Soure deposit, and cross-laminated sand and massive sand facies of the Marabá core. Also, organic-rich sediments were found in the bioturbated mud facies of the Amapá deposit, lenticular heterolithic and bioturbated mud facies of the Soure deposit, and laminated mud and peat facies of the Marabá deposit. At the Marabá site, the data suggest an autochthonous influence with peat formation. The coastal wetland sites at Marajó and Amapá represent the development of a typical tidal flat setting with sulfide and iron oxyhydroxides formation during alternated flooding and drying.

Com base em dados sedimentológicos e geoquímicos, este trabalho relaciona medições espectrofotométricas com a composição do sedimento, e sua aplicação em estudos paleoecológicos das áreas alagáveis da Amazônia. Os dados CIELAB estão diretamente relacionados à composição mineralógica e química dos sedimentos, especialmente quartzo, oxihidróxidos e sulfetos de ferro, e carbono orgânico total. Conteúdos de carbono orgânico total entre 0,4-1%, 1-2%, 3-5% e 15-40% foram relacionados a dados de L* (luminosidade) de 27, 26-15, 7-10 e 7 ou menos, respectivamente. Os valores CIELAB de um depósito com turfa em Marabá, Pará, foram proporcionais a variações no conteúdo de quartzo e carbono orgânico total, mas mudanças nas zonas de cores similares, principalmente nos valores de +a* (vermelho) e +b* (amarelo), ao longo de outros depósitos em Calçoene, Amapá e Soure, Pará, indicam uma relação muito próxima entre os conteúdos de carbono orgânico total, oxihidróxidos e sulfetos de ferro. Além disso, o diagrama Q7/4 (razão entre valores percentuais de refletância em 700 nm e 400 nm, juntamente com dados de L*) indicou sedimentos ricos em ferro para a fácies lama bioturbada no depósito do Amapá, fácies lama bioturbada e areia bioturbada do depósito de Soure, e das fácies areia com laminação cruzada e areia maciça do depósito de Marabá. Ainda, sedimentos ricos em carbono orgânico foram encontrados na lama bioturbada no depósito do Amapá, fácies heterolítica lenticular e lama bioturbada do depósito de Soure, e das fácies lama laminado e turfa do depósito de Marabá. Na área de Marabá, os dados sugerem uma influência autóctone com formação de turfa. As áreas de zonas úmidas costeiras no Marajó e Amapá representam o desenvolvimento típico de planícies de maré com formação de sulfetos e oxihidróxidos de ferro durante alternâncias entre inundação e exposição.

Model of wetland development of the Amapá coast during the late Holocene

The modern vegetation types, sedimentary sequences, pollen records and radiocarbon dating obtained from three sediment cores from Calçoene Coastal Plain were used to provide a palaeoecological history during the late Holocene of Amapá coastal wetland according to flood regime, sea-level and climatic changes. Based on these records, four phases of vegetation development are presented and they probably reflect the interaction between the flow energy to the sediment accumulation and the brackish/freshwater influence in the vegetation. This work suggests interchanges among time periods characterized by marine and fluvial influence. The longitudinal profile did not reveal the occurrence of mangrove in the sediment deposited around 2100 yr B.P. During the second phase, the mud progressively filled the depressions and tidal channels. The mangrove probably started its development on the channel edge, and the herbaceous field on the elevated sectors. The third phase is characterized by the interruption of mangrove development and the increase of "várzea" vegetation that may be due to the decrease in porewater salinity related to a decrease in marine water influence. The last phase is represented by the mangrove and "várzea" increase. The correlation between current patterns of geobotanical unit distribution and palaeovegetation indicates that mangrove and "várzea" forests are migrating over the herbaceous field on the topographically highest part of the studied coast, which can be related to a relative sea-level rise.

Os tipos de vegetação atual, sequências sedimentares, dados de pólen e datações por radiocarbono obtidas em três testemunhos de sedimento da planície costeira de Calçoene foram utilizados para estabelecer uma história paleoecológica durante o Holoceno superior das zonas úmidas costeiras do Amapá conforme as mudanças no regime de inundação, nível do mar e clima. Baseado nestes três registros, quatro fases de desenvolvimento da vegetação são apresentadas e provavelmente refletem a interação entre o fluxo de energia na acumulação do sedimento e a influência das águas salobras e doces na vegetação. Este trabalho sugere alternâncias entre períodos caracterizados por influências marinha e fluvial. O perfil longitudinal não revelou a ocorrência de manguezais nos sedimentos depositados por volta de 2100 anos A.P. Durante a segunda fase, a lama preencheu progressivamente as depressões e canais de maré. Provavelmente, os manguezais iniciaram seu desenvolvimento nas margens dos canais, e os campos herbáceos nos setores elevados. A terceira fase é caracterizada por uma interrupção no desenvolvimento dos manguezais e a expansão da vegetação de várzea devido a uma diminuição na influência das águas marinhas. A última fase é representada pela expansão de manguezais e várzeas. A correlação entre os padrões atuais de distribuição das unidades geobotânicas e a paleovegetação indica que os manguezais e as florestas de várzea estão migrando sobre os campos herbáceos nos setores topograficamente mais elevados do litoral em estudo, o que pode estar relacionado a um aumento do nível relativo do mar.

Papel de la determinación del poder cardíaco como factor pronóstico en pacientes con insuficiencia cardíaca crónica / Pronostic value of cardiac power determination in patients with chronic heart failure

Objetivos: Evaluar el valor pronóstico de una nueva variable derivada de la prueba de ejercicio cardiopulmonar (PECP), el poder cardíaco máximo (PCmáx) en el ejercicio pico. Material y métodos: Se evaluaron prospectivamente pacientes con insuficiencia cardíaca, en quienes se determinaron el VO2 máx, el PCmáx (pulso de oxígeno Î tensión arterial media) y la reserva cardíaca(PCmáx - basal). Se compararon los valores de acuerdo con la ocurrencia o no de eventos (internación por IC o muerte). Se evaluó el valor incremental a través de curvas ROC y la asociación de sus puntos de corte con eventos (log rank test y ajuste por confundidores por regresión de Cox). Punto final combinado: internación por IC y/o muerte. Resultados: Población: 157 pacientes, hombres 83,4 por ciento, edad 59 ± 10 años, clase funcional III/IV 22,2 por ciento, deterioro severo del VI 56,7 por ciento, eventos: 22,9 por ciento. Seguimiento promedio: 9 meses. Los pacientes con eventos presentaron menores valores de: VO2 máx (11,8 versus 14,9 ml/kg/min, p < 0,001), PCmáx (831 versus 1.079 watts, p = 0,003) y reserva cardíaca (465 versus 676 watts, p = 0,002). Áreas ROC: (VO2 máx: 0,73; PCmáx 0,68; RC 0,68, p = 0,34 entre áreas). Riesgo de eventos: para VO2 máx < 14 ml/kg/min HR 3,93 (IC 95 por ciento 1,89-8,20), p < 0,001; PCmáx < 780 watts HR 2,78 (IC 95 por ciento 1,42-5,43), p = 0,003; y RC < 350 watts HR 2,75 (IC 95 por ciento 1,42-5,35), p = 0,003. La incidencia de eventos fue del 8,54 por ciento en pacientes con VO2 y PC normales, 30,30 por ciento sólo un índice alterado: HR 3,09 (IC 95 por ciento 1,16-8,25), p = 0,024, y 45,24 por ciento con ambos alterados: HR 5 (IC 95 por ciento 1,81-13,75), p = 0,002. Conclusiones: La determinación del PCmáx es otra variable para determinar en la PECP que podría aportar valor pronóstico incremental agregado a otros parámetros clásicos.