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1.
Planta ; 259(3): 61, 2024 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-38319406

RESUMO

MAIN CONCLUSION: Agrobacterium-mediated transformation of Nicotiana tabacum, using an intragenic T-DNA region derived entirely from the N. tabacum genome, results in the equivalence of micro-translocations within genomes. Intragenic Agrobacterium-mediated gene transfer was achieved in Nicotiana tabacum using a T-DNA composed entirely of N. tabacum DNA, including T-DNA borders and the acetohydroxyacid synthase gene conferring resistance to sulfonylurea herbicides. Genomic analysis of a resulting plant, with single locus inheritance of herbicide resistance, identified a single insertion of the intragenic T-DNA on chromosome 5. The insertion event was composed of three N. tabacum DNA fragments from other chromosomes, as assembled on the T-DNA vector. This validates that intragenic transformation of plants can mimic micro-translocations within genomes, with the absence of foreign DNA.


Assuntos
Acetolactato Sintase , Rearranjo Gênico , Translocação Genética , DNA , Agrobacterium/genética , Nicotiana/genética
2.
BMC Biotechnol ; 19(1): 65, 2019 09 11.
Artigo em Inglês | MEDLINE | ID: mdl-31510982

RESUMO

BACKGROUND: A frequent problem associated with the tissue culture of Compositae species such as chicory (Cichorium intybus L.) and lettuce (Lactuca sativa L.) is the premature bolting to in vitro flowering of regenerated plants. Plants exhibiting such phase changes have poor survival and poor seed set upon transfer from tissue culture to greenhouse conditions. This can result in the loss of valuable plant lines following applications of cell and tissue culture for genetic manipulation. RESULTS: This study demonstrates that chicory and lettuce plants exhibiting stable in vitro flowering can be rejuvenated by a further cycle of adventitious shoot regeneration from cauline leaves. The resulting rejuvenated plants exhibit substantially improved performance following transfer to greenhouse conditions, with increased frequency of plant survival, a doubling of the frequency of plants that flowered, and substantially increased seed production. CONCLUSION: As soon as in vitro flowering is observed in unique highly-valued chicory and lettuce lines, a further cycle of adventitious shoot regeneration from cauline leaves should be implemented to induce rejuvenation. This re-establishes a juvenile phase accompanied by in vitro rosette formation, resulting in substantially improved survival, flowering and seed set in a greenhouse, thereby ensuring the recovery of future generations from lines genetically manipulated in cell and tissue culture.


Assuntos
Cichorium intybus/fisiologia , Lactuca/fisiologia , Cichorium intybus/citologia , Lactuca/citologia , Folhas de Planta/citologia , Folhas de Planta/fisiologia , Rejuvenescimento/fisiologia , Técnicas de Cultura de Tecidos/métodos
3.
BMC Biotechnol ; 17(1): 49, 2017 06 06.
Artigo em Inglês | MEDLINE | ID: mdl-28587679

RESUMO

BACKGROUND: Somatic cell selection in plants allows the recovery of spontaneous mutants from cell cultures. When coupled with the regeneration of plants it allows an effective approach for the recovery of novel traits in plants. This study undertook somatic cell selection in the potato (Solanum tuberosum L.) cultivar 'Iwa' using the sulfonylurea herbicide, chlorsulfuron, as a positive selection agent. RESULTS: Following 5 days' exposure of potato cell suspension cultures to 20 µg/l chlorsulfuron, rescue selection recovered rare potato cell colonies at a frequency of approximately one event in 2.7 × 105 of plated cells. Plants that were regenerated from these cell colonies retained resistance to chlorsulfuron and two variants were confirmed to have different independent point mutations in the acetohydroxyacid synthase (AHAS) gene. One point mutation involved a transition of cytosine for thymine, which substituted the equivalent of Pro-197 to Ser-197 in the AHAS enzyme. The second point mutation involved a transversion of thymine to adenine, changing the equivalent of Trp-574 to Arg-574. The two independent point mutations recovered were assembled into a chimeric gene and binary vector for Agrobacterium-mediated transformation of wild-type 'Iwa' potato. This confirmed that the mutations in the AHAS gene conferred chlorsulfuron resistance in the resulting transgenic plants. CONCLUSIONS: Somatic cell selection in potato using the sulfonylurea herbicide, chlorsulfuron, recovered resistant variants attributed to mutational events in the AHAS gene. The mutant AHAS genes recovered are therefore good candidates as selectable marker genes for intragenic transformation of potato.


Assuntos
Acetolactato Sintase/genética , Marcadores Genéticos/genética , Plantas Geneticamente Modificadas/fisiologia , Mutação Puntual/genética , Seleção Genética/genética , Solanum tuberosum/efeitos dos fármacos , Solanum tuberosum/fisiologia , Sulfonamidas/administração & dosagem , Triazinas/administração & dosagem , Acetolactato Sintase/metabolismo , Resistência a Herbicidas/genética , Herbicidas/administração & dosagem , Células Vegetais/enzimologia , Células Vegetais/metabolismo
4.
BMC Genomics ; 15: 2, 2014 Jan 02.
Artigo em Inglês | MEDLINE | ID: mdl-24382166

RESUMO

BACKGROUND: GSL1 and GSL2, Gibberellin Stimulated-Like proteins (also known as Snakin-1 and Snakin-2), are cysteine-rich peptides from potato (Solanum tuberosum L.) with antimicrobial properties. Similar peptides in other species have been implicated in diverse biological processes and are hypothesised to play a role in several aspects of plant development, plant responses to biotic or abiotic stress through their participation in hormone crosstalk, and redox homeostasis. To help resolve the biological roles of GSL1 and GSL2 peptides we have undertaken an in depth analysis of the structure and expression of these genes in potato. RESULTS: We have characterised the full length genes for both GSL1 (chromosome 4) and GSL2 (chromosome 1) from diploid and tetraploid potato using the reference genome sequence of potato, coupled with further next generation sequencing of four highly heterozygous tetraploid cultivars. The frequency of SNPs in GSL1 and GSL2 were very low with only one SNP every 67 and 53 nucleotides in exon regions of GSL1 and GSL2, respectively. Analysis of comprehensive RNA-seq data substantiated the role of specific promoter motifs in transcriptional control of gene expression. Expression analysis based on the frequency of next generation sequence reads established that GSL2 was expressed at a higher level than GSL1 in 30 out of 32 tissue and treatment libraries. Furthermore, both the GSL1 and GSL2 genes exhibited constitutive expression that was not up regulated in response to biotic or abiotic stresses, hormone treatments or wounding. Potato transformation with antisense knock-down expression cassettes failed to recover viable plants. CONCLUSIONS: The potato GSL1 and GSL2 genes are very highly conserved suggesting they contribute to an important biological function. The known antimicrobial activity of the GSL proteins, coupled with the FPKM analysis from RNA-seq data, implies that both genes contribute to the constitutive defence barriers in potatoes. The lethality of antisense knock-down expression of GSL1 and GSL2, coupled with the rare incidence of SNPs in these genes, suggests an essential role for this gene family. These features are consistent with the GSL protein family playing a role in several aspects of plant development in addition to plant defence against biotic stresses.


Assuntos
Genes de Plantas , Giberelinas/genética , Proteínas de Plantas/genética , Solanum tuberosum/genética , Alelos , Cromossomos de Plantas , Biologia Computacional , Sequência Conservada/genética , Diploide , Regulação da Expressão Gênica de Plantas , Giberelinas/química , Giberelinas/metabolismo , Sequenciamento de Nucleotídeos em Larga Escala , Oligonucleotídeos Antissenso/metabolismo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Polimorfismo de Nucleotídeo Único , Regiões Promotoras Genéticas , Solanum tuberosum/metabolismo , Tetraploidia
5.
Theor Appl Genet ; 127(3): 677-89, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24370960

RESUMO

Over-expression of the potato Gibberellin Stimulated-Like 2 ( GSL2 ) gene in transgenic potato confers resistance to blackleg disease incited by Pectobacterium atrosepticum and confirms a role for GSL2 in plant defence. The Gibberellin Stimulated-Like 2 (GSL2) gene (also known as Snakin 2) encodes a cysteine-rich, low-molecular weight antimicrobial peptide produced in potato plants. This protein is thought to play important roles in the innate defence against invading microbes. Over-expression of the GSL2 gene in potato (cultivar Iwa) was achieved using Agrobacterium-mediated gene transfer of a plant expression vector with the potato GSL2 gene under the regulatory control elements of the potato light-inducible Lhca3 gene. The resulting plants were confirmed as being transgenic by PCR, and subsequently analysed for transcriptional expression of the Lhca3-GSL2-Lhca3 chimeric potato gene. Quantitative RT-PCR analysis demonstrated that the majority of the transgenic potato lines over-expressed the GSL2 gene at the mRNA level. Based on qRT-PCR results and evaluation of phenotypic appearance, eight lines were selected for further characterisation and evaluated in bioassays for resistance to Pectobacterium atrosepticum (formerly Erwinia carotovora subsp. atroseptica), the causal agent of blackleg in potato. Three independent pathogenicity bioassays showed that transgenic lines with significantly increased transcriptional expression of the GSL2 gene exhibit resistance to blackleg disease. This establishes a functional role for GSL2 in plant defence against pathogens in potato.


Assuntos
Resistência à Doença/genética , Genes de Plantas , Pectobacterium , Proteínas de Plantas/genética , Solanum tuberosum/genética , DNA de Plantas/genética , Doenças das Plantas/microbiologia , Proteínas de Plantas/metabolismo , Solanum tuberosum/microbiologia
6.
Plant Biotechnol J ; 11(8): 907-20, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23924159

RESUMO

Potato is the third most important global food crop and the most widely grown noncereal crop. As a species highly amenable to cell culture, it has a long history of biotechnology applications for crop improvement. This review begins with a historical perspective on potato improvement using biotechnology encompassing pathogen elimination, wide hybridization, ploidy manipulation and applications of cell culture. We describe the past developments and new approaches for gene transfer to potato. Transformation is highly effective for adding single genes to existing elite potato clones with no, or minimal, disturbances to their genetic background and represents the only effective way to produce isogenic lines of specific genotypes/cultivars. This is virtually impossible via traditional breeding as, due to the high heterozygosity in the tetraploid potato genome, the genetic integrity of potato clones is lost upon sexual reproduction as a result of allele segregation. These genetic attributes have also provided challenges for the development of genetic maps and applications of molecular markers and genomics in potato breeding. Various molecular approaches used to characterize loci, (candidate) genes and alleles in potato, and associating phenotype with genotype are also described. The recent determination of the potato genome sequence has presented new opportunities for genomewide assays to provide tools for gene discovery and enabling the development of robustly unique marker haplotypes spanning QTL regions. The latter will be useful in introgression breeding and whole-genome approaches such as genomic selection to improve the efficiency of selecting elite clones and enhancing genetic gain over time.


Assuntos
Biotecnologia/tendências , Genômica/tendências , Solanum tuberosum/genética , Bacillus thuringiensis/genética , Toxinas de Bacillus thuringiensis , Proteínas de Bactérias/genética , Resistência à Doença/genética , Endotoxinas/genética , Genoma de Planta , Proteínas Hemolisinas/genética , Doenças das Plantas/genética , Plantas Geneticamente Modificadas
7.
Mol Genet Genomics ; 287(6): 451-60, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22526372

RESUMO

In planta the enzymatic activity of apoplastic and vacuolar invertases is controlled by inhibitory proteins. Although these invertase inhibitors (apoplastic and vacuolar forms) have been implicated as contributing to resistance to cold-induced sweetening (CIS) in tubers of potato (Solanum tuberosum L.), there is a lack of information on the structure and allelic diversity of the apoplastic invertase inhibitor genes. We have PCR-isolated and sequenced the alleles of the apoplastic invertase inhibitor gene (Stinh1) from three tetraploid potato genotypes: 1021/1 (a genotype with very high tolerance to CIS), 'Karaka' and 'Summer Delight' (two cultivars that are highly susceptible to CIS). In total, five alleles were identified in these genotypes, of which four (Stinh1-c, Stinh1-d, Stinh1-e, Stinh1-f) were novel. An analysis of allele diversity was conducted by incorporating previously published sequences of apoplastic invertase inhibitors from potato. Eight alleles were assessed for sequence polymorphism in the two exons and the single hypervariable intron. Contrary to the hypervariable intron, only 65 single nucleotide polymorphisms were observed in the exons, of which 42 confer amino acid substitutions. Phylogenetic analysis of amino acid sequences indicates that the alleles of the invertase inhibitor are highly conserved amongst members of the Solanaceae family.


Assuntos
Genes de Plantas , Solanum tuberosum/genética , Alelos , Sequência de Aminoácidos , Sequência de Bases , Temperatura Baixa , DNA de Plantas/genética , Éxons , Variação Genética , Íntrons , Dados de Sequência Molecular , Filogenia , Proteínas de Plantas/genética , Polimorfismo de Nucleotídeo Único , Homologia de Sequência de Aminoácidos , Solanum tuberosum/metabolismo , Tetraploidia , beta-Frutofuranosidase/antagonistas & inibidores
8.
BMC Biotechnol ; 11: 93, 2011 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-21995716

RESUMO

BACKGROUND: The recovery of high performing transgenic lines in clonal crops is limited by the occurrence of somaclonal variation during the tissue culture phase of transformation. This is usually circumvented by developing large populations of transgenic lines, each derived from the first shoot to regenerate from each transformation event. This study investigates a new strategy of assessing multiple shoots independently regenerated from different transformed cell colonies of potato (Solanum tuberosum L.). RESULTS: A modified cry9Aa2 gene, under the transcriptional control of the CaMV 35S promoter, was transformed into four potato cultivars using Agrobacterium-mediated gene transfer using a nptII gene conferring kanamycin resistance as a selectable marker gene. Following gene transfer, 291 transgenic lines were grown in greenhouse experiments to assess somaclonal variation and resistance to potato tuber moth (PTM), Phthorimaea operculella (Zeller). Independently regenerated lines were recovered from many transformed cell colonies and Southern analysis confirmed whether they were derived from the same transformed cell. Multiple lines regenerated from the same transformed cell exhibited a similar response to PTM, but frequently exhibited a markedly different spectrum of somaclonal variation. CONCLUSIONS: A new strategy for the genetic improvement of clonal crops involves the regeneration and evaluation of multiple shoots from each transformation event to facilitate the recovery of phenotypically normal transgenic lines. Most importantly, regenerated lines exhibiting the phenotypic appearance most similar to the parental cultivar are not necessarily derived from the first shoot regenerated from a transformed cell colony, but can frequently be a later regeneration event.


Assuntos
Agrobacterium tumefaciens/genética , Proteínas de Bactérias/genética , Biotecnologia/métodos , Endotoxinas/genética , Proteínas Hemolisinas/genética , Larva/efeitos dos fármacos , Brotos de Planta/genética , Solanum tuberosum/genética , Animais , Toxinas de Bacillus thuringiensis , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/farmacologia , Southern Blotting , Endotoxinas/metabolismo , Endotoxinas/farmacologia , Técnicas de Transferência de Genes , Marcadores Genéticos , Variação Genética , Proteínas Hemolisinas/metabolismo , Proteínas Hemolisinas/farmacologia , Inseticidas/metabolismo , Inseticidas/farmacologia , Larva/fisiologia , Mariposas/efeitos dos fármacos , Mariposas/fisiologia , Brotos de Planta/imunologia , Brotos de Planta/metabolismo , Técnicas de Embriogênese Somática de Plantas , Plantas Geneticamente Modificadas , Regiões Promotoras Genéticas , Regeneração , Solanum tuberosum/imunologia , Solanum tuberosum/metabolismo
9.
Theor Appl Genet ; 122(6): 1171-7, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21229230

RESUMO

Transgenic plants frequently exhibit altered phenotypes, unrelated to transgene expression, which are attributed to tissue culture-induced variation and/or insertional mutagenesis. Distinguishing between these possibilities has been difficult in clonal crops such as potato, due to their highly heterozygous background and the resulting inherent phenotypic variability associated with segregation. This study reports the use of transgene integration as a molecular marker to trace the clonal origin of single cells in tissue culture. Following transformation, multiple shoots have been regenerated from cell colonies of potato (Solanum tuberosum L.) and Southern analysis used to confirm their derivation from a single transformed cell. Analysis of phenotypic variation in field trials has demonstrated marked differences between these multiple regeneration events, the origin of which must have occurred after T-DNA insertion, and consequently during the tissue culture phase. This result unequivocally demonstrates that somaclonal variation occurs during tissue culture and independent of transgene insertion. Furthermore, the first shoots recovered do not necessarily exhibit less somaclonal variation, since later regeneration events can give rise to plants that are more phenotypically normal. Therefore, when developing transgenic lines for genetic improvement of clonal crops, multiple shoots should be regenerated and evaluated from each transformation event to facilitate the recovery of phenotypically normal transgenic lines.


Assuntos
Produtos Agrícolas/genética , Fenótipo , Plantas Geneticamente Modificadas/genética , Solanum tuberosum/genética , Genoma de Planta , Transgenes
10.
Physiol Plant ; 139(3): 229-40, 2010 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-20163556

RESUMO

MYB transcription factors play important roles in transcriptional regulation of many secondary metabolites including anthocyanins. We cloned the R2R3-MYB type IbMYB1 complementary DNAs from the purple-fleshed sweet potato (Ipomoea batatas L. cv Sinzami) and investigated the expression patterns of IbMYB1 gene with IbMYB1a and IbMYB1b splice variants in leaf and root tissues of various sweet potato cultivars by reverse transcription-polymerase chain reaction. The transcripts of IbMYB1 were predominantly expressed in the purple-fleshed storage roots and they were also detectable in the leaf tissues accumulating anthocyanin pigments. In addition, transcript levels of IbMYB1 gene were up-regulated by treatment with methyl jasmonate or salicylic acid in leaf and root tissues of cv. White Star. To set up the intragenic vector system in sweet potato, we first evaluated the utilization of the IbMYB1 gene as a visible selectable marker. The IbMYB1a was transiently expressed in tobacco leaves under the control of a constitutive cauliflower mosaic virus 35S promoter, a root-specific and sucrose-inducible sporamin promoter, and an oxidative stress-inducible sweet potato anionic peroxidase2 promoter. We also showed that overexpression of IbMYB1a induced massive anthocyanin pigmentation in tobacco leaves and up-regulated the transcript levels of the structural genes in anthocyanin biosynthetic pathway. Furthermore, high-performance liquid chromatography analysis revealed that the expression of IbMYB1a led to production of cyanidin as a major core molecule of anthocyanidins in tobacco leaves. These results suggest that the IbMYB1 gene can be applicable to a visible marker for sweet potato transformation with intragenic vectors, as well as the production of anthocyanin as important nutritive value in other plant species.


Assuntos
Antocianinas/biossíntese , Ipomoea batatas/genética , Proteínas de Plantas/metabolismo , Fatores de Transcrição/metabolismo , Acetatos/farmacologia , Processamento Alternativo , Ciclopentanos/farmacologia , DNA Complementar/genética , Regulação da Expressão Gênica de Plantas , Marcadores Genéticos , Vetores Genéticos , Ipomoea batatas/metabolismo , Oxilipinas/farmacologia , Folhas de Planta/genética , Folhas de Planta/metabolismo , Proteínas de Plantas/genética , Tubérculos/genética , Tubérculos/metabolismo , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , RNA de Plantas/genética , Ácido Salicílico/farmacologia , Nicotiana/genética , Nicotiana/metabolismo , Fatores de Transcrição/genética , Transformação Genética
11.
J Hered ; 101(6): 750-6, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20631045

RESUMO

The model basal eudicot plant California poppy (Eschscholzia californica Cham.) typically has intense yellow to orange petals and orange pollen due to pigmentation by carotenoids. Flower color variants ranging from white to yellow and orange are common. We analyzed flower color inheritance in a diverse range of white and yellow color variants with reduced carotenoid content. The inheritance of the petal-pollen color of 24 variant flowers was investigated through complementation analysis by hybridization between different color variants and screening F(1), F(2), and BC(1) populations for segregation of petal-pollen color. All white and yellow flower color variants exhibited the pleiotropic effect with each mutation influencing both petal and pollen color, with both petal and pollen color phenotypes coinherited. A total of 5 complementation groups were identified with the color variants behaving as single recessive loci. Epistatic interactions among the loci were also identified. The white/yellow California poppy color variants described in this paper represent a unique genetic resource for analysis of carotenoid biosynthesis in this basal eudicot species.


Assuntos
Carotenoides/genética , Epistasia Genética , Eschscholzia/genética , Flores/genética , Pigmentação/genética , Cruzamento , Carotenoides/biossíntese , Cruzamentos Genéticos , Flores/anatomia & histologia , Perfilação da Expressão Gênica , Genes de Plantas , Genes Recessivos , Teste de Complementação Genética , Variação Genética , Padrões de Herança , Fenótipo , Pólen/anatomia & histologia , Pólen/genética
12.
Phytopathology ; 100(5): 460-7, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-20373967

RESUMO

Somatic cell selection with thaxtomin A as a positive selection agent was used to isolate variants of potato cv. Russet Burbank with strong to extreme resistance to common scab. Glasshouse and field trials identified 51 variants with significantly reduced disease incidence (frequency of infected tubers) and severity (tuber lesion coverage) compared with the parent cultivar. The most promising variants exhibited extreme disease resistance, rarely showing lesions, which were invariably superficial and shallower than those on the parent. Resistance traits were consistently expressed both in 10 glasshouse and two field trials at different locations, with varied inoculum and disease pressure. Disease-resistant variants differed in their response to thaxtomin A in tuber slice bioassays. Of 23 variants tested, 10 showed reduced thaxtomin A susceptibility, with the remaining 13 responding similar to that of the parent. Thus, toxin tolerance was not the only factor responsible for observed disease resistance; however, four of the five most disease-resistant variants had enhanced thaxtomin A tolerance, suggesting that this factor is important in the expression of strong disease resistance. Pathogenicity and toxin tolerance remained stable over a 6-year period, demonstrating that selected phenotypes were robust and genetic changes stable. The majority of disease-resistant variants had tuber yields equivalent to the parent cultivar in glasshouse trials. This suggests that selection for disease resistance was not associated with negative tuber attributes and that certain variants may have commercial merit, worthy of further agronomic testing.


Assuntos
Predisposição Genética para Doença , Doenças das Plantas/genética , Seleção Genética , Solanum tuberosum/genética , Solanum tuberosum/microbiologia , Células Clonais , Indóis , Piperazinas , Doenças das Plantas/microbiologia , Streptomyces/fisiologia
13.
Commun Agric Appl Biol Sci ; 74(3): 667-79, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-20222549

RESUMO

Disease resistance is an important objective of global potato breeding programmes. The use of resistant cultivars is a significant tool for disease management. Recent advances in plant molecular genetics have identified several genes for resistance to potato diseases from within the germplasm pool available to potato breeders. Antimicrobial peptides, such as Snakin-1 (StSN1) and Snakin-2 (StSN2), have been isolated recently from potato tubers. Overexpression of the StSNI and StSN2 genes in potato is known to provide broad spectrum activity against a wide range of bacterial and fungal pathogens. We describe the use of intragenic gene transfer technology towards disease resistance in potatoes. An expression cassette was constructed with the 5' promoter and 3' terminator regions of a potato gene encoding a chlorophyll a/b binding protein (StLhca3). The coding regions of the StSN1 and StSN2 genes of potato were cloned individually between these regulatory regions. The resulting Lhca3-StSNi-Lhca3 and Lhca3-StSN2-Lhco3 chimeric genes were individually cloned into a potato-derived T-DNA-like region for potato transformation. Potato cultivar Iwa was co-cultivated with Agrobocterium harbouring intragenic binary vectors with the StSN1 and StSN2 genes. Regenerated potato plants were screened using PCR to identify lines transformed with the disease resistance genes without the presence of foreign DNA.


Assuntos
Imunidade Inata/genética , Doenças das Plantas/genética , Solanum tuberosum/genética , Sequência de Bases , Primers do DNA , DNA de Plantas/genética , DNA de Plantas/isolamento & purificação , Vetores Genéticos , Íntrons/genética , Dados de Sequência Molecular , Doenças das Plantas/prevenção & controle , Proteínas de Plantas/análise , Proteínas de Plantas/genética , Brotos de Planta/genética , Reação em Cadeia da Polimerase , Regiões Terminadoras Genéticas
14.
Protist ; 158(4): 423-33, 2007 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-17618828

RESUMO

Plasmodiophora brassicae, a pathogen of Brassicaceae plants, is grouped within the eukaryotic supergroup, the Rhizaria. Although a large diversity of protists is found in the Rhizaria, genomes of organisms within the group have barely been examined. In this study, we identified DNA sequences spanning or flanking 24 P. brassicae genes, eventually sequencing close to 44 kb of genomic DNA. Evidence from this preliminary genome survey suggested that splicing is an important feature of P. brassicae gene expression; the P. brassicae genes were rich in spliceosomal introns and two mini-exons of less than 20 bp were identified. Consensus splice sites and branch-point sequences in P. brassicae introns were similar to those found in other eukaryotes. Examination of the promoter and transcription start sites of genes indicated that P. brassicae transcription is likely to begin from initiator elements rather than TATA-box containing promoters. Where neighbouring genes were confirmed, intergenic distances were short, ranging from 44 to 470 bp, but a number of larger DNA fragments containing no obvious genes were also sequenced.


Assuntos
Brassicaceae/microbiologia , Fungos/genética , Íntrons , Animais , Sequência Consenso , DNA Intergênico/genética , DNA de Protozoário/química , DNA de Protozoário/genética , Éxons , Dados de Sequência Molecular , Regiões Promotoras Genéticas , Sítios de Splice de RNA/genética , Análise de Sequência de DNA , Sítio de Iniciação de Transcrição
15.
Plant Biotechnol J ; 4(4): 445-52, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17177809

RESUMO

A major challenge for future genetically modified (GM) crops is to prevent undesired gene flow of transgenes to plant material intended for another use. Recombinase-mediated auto excision of transgenes directed by a tightly controlled microspore-specific promoter allows efficient removal of either the selectable marker gene or of all introduced transgenes during microsporogenesis. This way, transgene removal becomes an integral part of the biology of pollen maturation, not requiring any external stimulus such as chemical induction by spraying. We here show the feasibility of engineering transgenic plants to produce pollen devoid of any transgene. Highly efficient excision of transgenes from tobacco pollen was achieved with a potential failure rate of at most two out of 16,800 seeds (0.024%). No evidence for either premature activation or absence of activation of the recombinase system was observed under stress conditions in the laboratory. This approach can prevent adventitious presence of transgenes in non-GM crops or related wild species by gene flow. Such biological containment may help the deployment and management of coexistence practices to support consumer choice and will promote clean molecular farming for the production of high-value compounds in plants.


Assuntos
Nicotiana/genética , Plantas Geneticamente Modificadas/genética , Pólen/genética , Recombinação Genética , Transgenes , Alelos , Arabidopsis/genética , Fluxo Gênico , Engenharia Genética/métodos , Marcadores Genéticos , Integrases/genética , Plasmídeos , Regiões Promotoras Genéticas
16.
FEMS Microbiol Lett ; 264(2): 198-204, 2006 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-17064373

RESUMO

Plasmodiophora brassicae is an intracellular pathogen that infects plants in the Brassicaceae family. Although an important pathogen group, information on the genomic makeup of the plasmodiophorids is almost completely lacking. We performed suppression subtractive hybridization (SSH) between RNA from P. brassicae-infected and uninfected Arabidopsis tissue, then screened 232 clones from the resulting SSH library. In addition, we used an oligo-capping procedure to screen 305 full-length cDNA clones from the infected tissue. A total of 76 new P. brassicae gene sequences were identified, the majority of which were extended to full length at the 5' end by the use of RACE amplification. Many of the unisequences were predicted to contain signal peptides for ER translocation. Although we located few sequences in total, these markedly increase available data from the plasmodiophorids, and provide new opportunities to examine plasmodiophorid biology. Our study also points towards the best methods for future plasmodiophorid gene discovery.


Assuntos
Brassica/microbiologia , Fungos/classificação , Fungos/patogenicidade , Clonagem Molecular , Fungos/genética , Hibridização de Ácido Nucleico/métodos
17.
BMC Res Notes ; 7: 777, 2014 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-25367168

RESUMO

BACKGROUND: The Gibberellin Stimulated-Like (GSL) or Snakin peptides from higher plants are cysteine-rich, with broad spectrum activity against a range of bacterial and fungal pathogens. To detect GSL peptides in applications such as western blot analysis and enzyme-linked immunosorbent assays (ELISA), specific antibodies that recognise GSL peptides are required. However, the intrinsic antimicrobial activity of these peptides is likely to prevent their expression alone in bacterial or yeast expression systems for subsequent antibody production in animal hosts. RESULTS: To overcome this issue we developed an Escherichia coli expression strategy based on the expression of the GSL1 peptide as a His-tagged thioredoxin fusion protein. The DNA sequence for the mature GSL1 peptide from potato (Solanum tuberosum L.) was cloned into the pET-32a expression vector to produce a construct encoding N-terminally tagged his6-thioredoxin-GSL1. The fusion protein was overexpressed in E. coli to produce soluble non-toxic protein. The GSL1 fusion protein could be easily purified by using affinity chromatography to yield ~1.3 mg of his6-thioredoxin-GSL1 per L of culture. The fusion protein was then injected into rabbits for antibody production. Western blot analysis showed that the antibodies obtained from rabbit sera specifically recognised the GSL1 peptide that had been expressed in a wheat germ cell-free expression system. CONCLUSION: We present here the first report of a GSL1 peptide expressed as a fusion protein with thioredoxin that has resulted in milligram quantities of soluble protein to be produced. We have also demonstrated that a wheat germ system can be used to successfully express small quantities of GSL1 peptide useful as positive control in western blot analysis. To our knowledge this is the first report of antibodies being produced against GSL1 peptide. The antibodies will be useful for analysis of GSL1peptides in western blot, localization by immunohistochemistry (IHC) and quantitation by ELISA.


Assuntos
Anticorpos/sangue , Clonagem Molecular , Escherichia coli/metabolismo , Proteínas de Plantas/biossíntese , Proteínas de Plantas/isolamento & purificação , Sequência de Aminoácidos , Animais , Especificidade de Anticorpos , Sequência de Bases , Western Blotting , Cromatografia de Afinidade , Escherichia coli/genética , Histidina/biossíntese , Histidina/isolamento & purificação , Injeções Intravenosas , Dados de Sequência Molecular , Oligopeptídeos/biossíntese , Oligopeptídeos/isolamento & purificação , Proteínas de Plantas/administração & dosagem , Proteínas de Plantas/genética , Proteínas de Plantas/imunologia , Coelhos , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/isolamento & purificação , Tiorredoxinas/biossíntese , Tiorredoxinas/isolamento & purificação
19.
Protist ; 162(3): 449-61, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21183405

RESUMO

The plasmodiophorids are a phylogenetically distinct group of parasitic protists that infect plants and stramenopiles, causing several important agricultural diseases. Because of the obligate intracellular part of their lifecycle, none of the plasmodiophorids has been axenically cultured. Further, the molecular biology of the plasmodiophorids is poorly understood because pure cultures are not available from any species. We report on an in-vitro dual culture system of the plasmodiophorids Plasmodiophora brassicae and Spongospora subterranea with their respective plant hosts, Brassica rapa and Solanum tuberosum. We show that these plasmodiophorids are capable of initiating and maintaining stable, long-term plant cell callus cultures in the absence of exogenous plant growth regulators. We show that callus cultures harbouring S. subterranea provide an excellent starting material for gene discovery from this organism by constructing a pilot-scale DNA library. Bioinformatic analysis of the sequences established that almost all of the DNA clones from this library were from S. subterranea rather than the plant host. The Spongospora genome was found to be rich in retrotransposable elements, and Spongospora protein-coding genes were shown to contain introns. The sequence of a near full-length non-LTR retrotransposon was obtained, the first transposable element reported from a cercozoan protist.


Assuntos
Brassica rapa/parasitologia , Genômica/métodos , Doenças das Plantas/parasitologia , Plasmodioforídeos/genética , Retroelementos/genética , Solanum tuberosum/parasitologia , Sequência de Aminoácidos , Arabidopsis/parasitologia , Sequência de Bases , Brassica rapa/ultraestrutura , DNA de Protozoário/genética , Biblioteca Gênica , Íntrons/genética , Microscopia Eletrônica de Transmissão , Dados de Sequência Molecular , Filogenia , Plasmodioforídeos/ultraestrutura , RNA de Protozoário/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Solanum tuberosum/ultraestrutura , Técnicas de Cultura de Tecidos
20.
Plant J ; 33(1): 19-46, 2003 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-12943539

RESUMO

Despite numerous future promises, there is a multitude of concerns about the impact of GM crops on the environment. Key issues in the environmental assessment of GM crops are putative invasiveness, vertical or horizontal gene flow, other ecological impacts, effects on biodiversity and the impact of presence of GM material in other products. These are all highly interdisciplinary and complex issues. A crucial component for a proper assessment is defining the appropriate baseline for comparison and decision. For GM crops, the best and most appropriately defined reference point is the impact of plants developed by traditional breeding. The latter is an integral and accepted part of agriculture. In many instances, the putative impacts identified for GM crops are very similar to the impacts of new cultivars derived from traditional breeding. When assessing GM crops relative to existing cultivars, the increased knowledge base underpinning the development of GM crops will provide greater confidence in the assurances plant science can give on the risks of releasing such crops.


Assuntos
Produtos Agrícolas/efeitos adversos , Ecossistema , Meio Ambiente , Plantas Geneticamente Modificadas/efeitos adversos , Plantas/genética , Técnicas de Transferência de Genes , Reprodução , Medição de Risco
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