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1.
Phytopathology ; 113(6): 960-974, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36576402

RESUMO

The plant-pathogenic bacterium Xylella fastidiosa is a major threat to agriculture and the environment worldwide. Recent devastating outbreaks in Europe highlight the potential of this pathogen to cause emergent diseases. X. fastidiosa subsp. multiplex ESVL and IVIA5901 strains that belong to sequence type 6 were isolated from almond orchards within the outbreak area in Alicante province (Spain). Both strains share more than 99% of the chromosomal sequences (average nucleotide identity), but the ESVL strain harbors two plasmids (pXF64-Hb_ESVL and pUCLA-ESVL). Here, virulence phenotypes and genome content were compared between both strains, using three strains from the United States as a reference for the phenotypic analyses. Experiments in microfluidic chambers, used as a simulation of xylem vessels, showed that twitching motility was absent in the IVIA5901 strain, whereas the ESVL strain had reduced twitching motility. In general, both Spanish strains had less biofilm formation, less cell aggregation, and lower virulence in tobacco compared with U.S. reference strains. Genome analysis of the two plasmids from ESVL revealed 51 unique coding sequences that were absent in the chromosome of IVIA5901. Comparison of the chromosomes of both strains showed some unique coding sequences and single-nucleotide polymorphisms in each strain, with potential deleterious mutations. Genomic differences found in genes previously associated with adhesion and motility might explain the differences in the phenotypic traits studied. Although additional studies are necessary to infer the potential role of X. fastidiosa plasmids, our results indicate that the presence of plasmids should be considered in the study of the mechanisms of pathogenicity and adaptation in X. fastidiosa to new environments. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Assuntos
Prunus dulcis , Xylella , Espanha , Virulência/genética , Doenças das Plantas/microbiologia , Plasmídeos/genética
2.
Remote Sens Environ ; 260: 112420, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-34219817

RESUMO

The early detection of Xylella fastidiosa (Xf) infections is critical to the management of this dangerous plan pathogen across the world. Recent studies with remote sensing (RS) sensors at different scales have shown that Xf-infected olive trees have distinct spectral features in the visible and infrared regions (VNIR). However, further work is needed to integrate remote sensing in the management of plant disease epidemics. Here, we research how the spectral changes picked up by different sets of RS plant traits (i.e., pigments, structural or leaf protein content), can help capture the spatial dynamics of Xf spread. We coupled a spatial spread model with the probability of Xf-infection predicted by a RS-driven support vector machine (RS-SVM) model. Furthermore, we analyzed which RS plant traits contribute most to the output of the prediction models. For that, in almond orchards affected by Xf (n = 1426 trees), we conducted a field campaign simultaneously with an airborne campaign to collect high-resolution thermal images and hyperspectral images in the visible-near-infrared (VNIR, 400-850 nm) and short-wave infrared regions (SWIR, 950-1700 nm). The best performing RS-SVM model (OA = 75%; kappa = 0.50) included as predictors leaf protein content, nitrogen indices (NIs), fluorescence and a thermal indicator (Tc), alongside pigments and structural parameters. Leaf protein content together with NIs contributed 28% to the explanatory power of the model, followed by chlorophyll (22%), structural parameters (LAI and LIDFa), and chlorophyll indicators of photosynthetic efficiency. Coupling the RS model with an epidemic spread model increased the accuracy (OA = 80%; kappa = 0.48). In the almond trees where the presence of Xf was assayed by qPCR (n = 318 trees), the combined RS-spread model yielded an OA of 71% and kappa = 0.33, which is higher than the RS-only model and visual inspections (both OA = 64-65% and kappa = 0.26-31). Our work demonstrates how combining spatial epidemiological models and remote sensing can lead to highly accurate predictions of plant disease spatial distribution.

3.
Anim Cogn ; 18(5): 1077-91, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25981056

RESUMO

Vision is of primary importance for many fish species, as is the recognition of movement. With the exception of one study, assessing the influence of conspecific movement on shoaling behaviour, the perception of biological motion in fish had not been studied in a cognitive context. The aim of the present study was therefore to assess the discrimination abilities of two teleost species in regard to simple and complex movement patterns of dots and objects, including biological motion patterns using point and point-light displays (PDs and PLDs). In two-alternative forced-choice experiments, in which choosing the designated positive stimulus was food-reinforced, fish were first tested in their ability to distinguish the video of a stationary black dot on a light background from the video of a moving black dot presented at different frequencies and amplitudes. While all fish succeeded in learning the task, performance declined with decreases in either or both parameters. In subsequent tests, cichlids and damselfish distinguished successfully between the videos of two dots moving at different speeds and amplitudes, between two moving dot patterns (sinus vs. expiring sinus) and between animated videos of two moving organisms (trout vs. eel). Transfer tests following the training of the latter showed that fish were unable to identify the positive stimulus (trout) by means of its PD alone, thereby indicating that the ability of humans to spontaneously recognize an organism based on its biological motion may not be present in fish. All participating individuals successfully discriminated between two PDs and two PLDs after a short period of training, indicating that biological motions presented in form of PLDs are perceived and can be distinguished. Results were the same for the presentation of dark dots on a light background and light dots on a dark background.


Assuntos
Aprendizagem por Discriminação , Percepção de Movimento , Perciformes/fisiologia , Percepção Visual , Animais , Comportamento Animal , Gravação em Vídeo
4.
Phytopathology ; 103(10): 1058-68, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23777403

RESUMO

Early, specific, and accurate in planta detection and quantification of Verticillium dahliae are essential to prevent the spread of Verticillium wilt in olive using certified pathogen-free planting material and development of resistance. We comparatively assessed the accuracy, specificity, and efficiency of eight real-time quantitative polymerase chain reaction protocols published since 2002 for the specific detection and quantification of V. dahliae in various host plant species and in soil, using a background of DNAs extracted from olive roots, stems, and leaves. Results showed that some of those protocols were not specific for V. dahliae or were inhibited when using backgrounds other than water. Ranking of protocols according to a weighted score system placed protocols TAQ (based on intergenic spacer ribosomal DNA target gene) and SYBR-4 (based on the ß-tubulin 2 target gene) first in sensitivity and efficiency for the quantification of V. dahliae DNA in small amounts and different types of olive tissues (root and stem) tested. Use of TAQ and SYBR-4 protocols allowed accurate quantification of V. dahliae DNA regardless of the background DNA, with a detection limit being fixed at a cycle threshold of 36 (≈18 fg for SYBR-4 and 15 fg for TAQ) of V. dahliae. The amount of DNA from defoliating (D) and nondefoliating (ND) V. dahliae pathotypes was monitored in Verticillium wilt-resistant 'Frantoio' olive using the TAQ and SYBR-4 protocols. In the infection bioassay, higher amounts of D V. dahliae DNA were measured in olive stems, whereas the average amount of fungal DNA in roots was higher for ND-infected plants than D-infected ones. Overall, V. dahliae DNA amounts in all olive tissues tested tended to slightly decrease or remain stable by the end of the experiment (35 days after inoculation). The SYBR-4 and TAQ protocols further enabled detection of V. dahliae in tissues of symptomless plants, suggesting that both techniques can be useful for implementing certification schemes of pathogen-free planting material as well as helpful tools in breeding resistance to V. dahliae in olive.


Assuntos
Olea , Verticillium , Olea/microbiologia , Doenças das Plantas/microbiologia , Raízes de Plantas/microbiologia , Reação em Cadeia da Polimerase em Tempo Real , Tubulina (Proteína)/genética , Verticillium/genética
5.
Med Intensiva ; 36(2): 143-51, 2012 Mar.
Artigo em Espanhol | MEDLINE | ID: mdl-21839547

RESUMO

Urinary tract infections (UTIs) account for 20-50% of all hospital-acquired infections occurring in the intensive care unit (ICU). In some reports UTI was found to be more frequent than hospital-acquired pneumonia and intravascular device bacteremia, with a greater incidence in developing countries. The risk factors associated with the appearance of UTI include the severity of illness at the time of admission to the ICU, female status, prolonged urinary catheterization or a longer ICU stay and poor urinary catheter management - mainly disconnection of the closed system. about the present study offers data on the epidemiology of UTI in the ICU, the identified risk factors, etiology, diagnosis, impact upon morbidity and mortality, and the measures to prevent its appearance.


Assuntos
Infecção Hospitalar/epidemiologia , Infecção Hospitalar/microbiologia , Infecções Urinárias/epidemiologia , Infecções Urinárias/microbiologia , Sistema Urinário/microbiologia , Estado Terminal , Infecção Hospitalar/diagnóstico , Infecção Hospitalar/terapia , Humanos , Fatores de Risco , Infecções Urinárias/diagnóstico , Infecções Urinárias/terapia
6.
EClinicalMedicine ; 43: 101242, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34957385

RESUMO

BACKGROUND: The use of rosuvastatin plus colchicine and emtricitabine/tenofovir in hospitalized patients with SARS-CoV-2 disease (COVID-19) has not been assessed. The objective of this study was to assess the effectiveness and safety of rosuvastatin plus colchicine, emtricitabine/tenofovir, and their combined use in these patients. METHODS: This was a randomized, controlled, open-label, multicentre, parallel, pragmatic study conducted in six referral hospitals in Bogotá, Colombia. The study enrolled hospitalized patients over 18 years of age with a confirmed diagnosis of COVID-19 complicated with pneumonia, not on chronic treatment with the study medications, and with no contraindications for their use. Patients were assigned 1:1:1:1. 1) emtricitabine with tenofovir disoproxil fumarate (FTC/TDF, 200/300 mg given orally for 10 days); 2) colchicine plus rosuvastatin (COLCH+ROSU, 0.5 mg and 40 mg given orally for 14 days); 3) emtricitabine with tenofovir disoproxil plus colchicine and rosuvastatin at the same doses and for the same period of time (FTC/TDF+COLCH+ROSU); or 4) the Colombian consensus standard of care, including a corticosteroid (SOC). The primary endpoint was 28-day all-cause mortality. A modified intention-to-treat analysis was used together with a usefulness analysis to determine which could be the best treatment. The trial was registered at ClinicalTrials.gov: NCT04359095. FINDINGS: Out of 994 candidates considered between August 2020 and March 2021, 649 (65.3%) patients agreed to participate and were enrolled in this study; among them, 633 (97.5%) were included in the analysis. The mean age was 55.4 years (SD ± 12.8 years), and 428 (68%) were men; 28-day mortality was significantly lower in the FTC/TDF+COLCH+ROSUV group than in the SOC group, 10.7% (17/159) vs. 17.4% (28/161) (hazard ratio [HR] 0.53; 95% CI 0.29 to 0.96). Mortality in the FTC/TDF group was 13.8% (22/160, HR 0.68, 95% CI 0.39 to 1.20) and 14.4% in the COLCH+ROSU group (22/153) (HR 0.78, 95% CI 0.44 to 1.36). A lower need for invasive mechanical ventilation was observed in the FTC/TDF+COLCH+ROSUV group than in the SOC group (risk difference [RD] - 0.08, 95% CI 0.11 to 0.04). Three patients presented severe adverse events, one severe diarrhoea in the COLCH+ROSU and one in the FTC/TDF+COLCH+ROSU group and one general exanthema in the FTC/TDF group. INTERPRETATION: The combined use of FTC/TDF+COLCH+ROSU reduces the risk of 28-day mortality and the need for invasive mechanical ventilation in hospitalized patients with pulmonary compromise from COVID-19. More randomized controlled trials are needed to compare the effectiveness and cost of treatment with this combination versus other drugs that have been shown to reduce mortality from SARS-CoV-2 infection and its usefulness in patients with chronic statin use.

7.
Nat Commun ; 12(1): 6088, 2021 10 19.
Artigo em Inglês | MEDLINE | ID: mdl-34667165

RESUMO

Plant pathogens pose increasing threats to global food security, causing yield losses that exceed 30% in food-deficit regions. Xylella fastidiosa (Xf) represents the major transboundary plant pest and one of the world's most damaging pathogens in terms of socioeconomic impact. Spectral screening methods are critical to detect non-visual symptoms of early infection and prevent spread. However, the subtle pathogen-induced physiological alterations that are spectrally detectable are entangled with the dynamics of abiotic stresses. Here, using airborne spectroscopy and thermal scanning of areas covering more than one million trees of different species, infections and water stress levels, we reveal the existence of divergent pathogen- and host-specific spectral pathways that can disentangle biotic-induced symptoms. We demonstrate that uncoupling this biotic-abiotic spectral dynamics diminishes the uncertainty in the Xf detection to below 6% across different hosts. Assessing these deviating pathways against another harmful vascular pathogen that produces analogous symptoms, Verticillium dahliae, the divergent routes remained pathogen- and host-specific, revealing detection accuracies exceeding 92% across pathosystems. These urgently needed hyperspectral methods advance early detection of devastating pathogens to reduce the billions in crop losses worldwide.


Assuntos
Ascomicetos/fisiologia , Olea/microbiologia , Doenças das Plantas/microbiologia , Prunus dulcis/microbiologia , Xylella/fisiologia , Desidratação , Especificidade de Hospedeiro , Olea/química , Prunus dulcis/química , Análise Espectral , Estresse Fisiológico
8.
Plant Dis ; 94(2): 280, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30754296

RESUMO

In May 2009, a stem rot of pepper (Capsicum annuum L.) occurred in a 20-ha field in Hacienda de Tarazona, Seville, in southern Spain. Affected plants appeared singly or were grouped in circular patches as much as 8 to 10 m in diameter. Early symptoms consisted of water-soaked lesions on crown and lower stem tissue in contact with the soil. Plant foliage became pale green and wilted, followed by a complete collapse of the plant. A dense white mycelial mat formed on the lower stem and crown with 1- to 2-mm-diameter, spherical, tan-to-dark brown sclerotia. Lower stem pieces of 12 plants with early disease symptoms were surface sterilized in 0.5% NaOCl, dried, transferred to acidified potato dextrose agar, and incubated at 25 ± 1°C in the dark. Fast-growing fungal colonies with white mycelium and abundant sclerotia developed after 6 to 10 days of incubation. On the basis of morphological characters, the fungus was identified as Sclerotium rolfsii Sacc. (2). To confirm the identity of the pathogen, the ribosomal DNA internal transcribed spacer was amplified and sequenced for two isolates (one of the two exact sequences was deposited as GenBank Accession No. GU080230). The sequence was 99% similar to sequences of Athelia rolfsii (S. rolfsii) in GenBank. Pathogenicity of two isolates was determined by placing two oat seeds colonized by each isolate 0.5 to 1 cm from the stem of 2-week-old pepper plants cv. Cristal (one plant per pot, eight replicates). Plants were incubated in a growth chamber maintained at 28 ± 1°C with a 14-h photoperiod of 360 µE·m-2·s-1 and 60 to 90% relative humidity for 10 days. By the sixth day, discoloration and blight of the foliage and stem was observed. Sclerotia formed around the crown and 88% of the plants died 7 days after inoculation. S. rolfsii was recovered from all affected pepper plants. Noninoculated control plants did not develop symptoms. In southern Spain, S. rolfsii is widely distributed in areas of sugar beet production (1). Because of the wide host range of the pathogen, southern blight could become an important disease of vegetable production in southern Spain. References: (1) R. Jordán-Ramírez et al. IOBC/WPRS Bull. 42:101. 2009. (2) J. E. M. Mordue. CMI Descriptions of Pathogenic Fungi and Bacteria. No. 410, 1974.

9.
Rev Argent Microbiol ; 42(3): 230-4, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-21180395

RESUMO

Patient care in an intensive care unit (ICU) is associated with an increased risk of developing nosocomial infections. Bacteremia is responsible for a great number of cases, 23% of which have attributable mortality in developed countries and can affect up to 52% of ICU patients. The main cause of mortality is inadequate and inappropriate antimicrobial empirical therapy. The incorrect use of antimicrobials is a major risk for identifying multidrug resistant microorganisms, thereby involving increased morbidity, mortality and costs. Implementing several surveillance systems and becoming acquainted with resistance patterns represent a valuable tool for identifying, preventing and treating this infectious complication. There is paucity of data regarding antimicrobial resistance in bacteremic patients in Latin America, and the available data reveals a worrying scenario.


Assuntos
Anti-Infecciosos/uso terapêutico , Bacteriemia/tratamento farmacológico , Farmacorresistência Bacteriana , Prescrição Inadequada , Humanos , Unidades de Terapia Intensiva , América Latina
10.
Rev Argent Microbiol ; 42(3): 208-11, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-21180392

RESUMO

Tigecycline is a broad spectrum antibiotic having activity against multiresistant isolates. In vitro susceptibility testing is difficult to perform with the use of traditional microbiological techniques. The aim of this study was to evaluate the disk diffusion test with three different Mueller-Hinton agar brands, and the Vitek 2 automated system in comparison with the standard broth microdilution method against 200 gram-negative isolates (Escherichia coil, Klebsiella pneumoniae, Enterobacter cloacae, Serratia marcescens and Acinetobacter baumannii). Among Enterobacteriaceae, the Becton Dickinson agar had the lowest rate of minor (32.5%) and major errors (3.8%). No very major errors were found. For A. baumanni, the rate of minor and major errors was lower. A high rate of agreement (94%) was found between the broth microdilution method and the Vitek 2 system. Our results show that there are important differences between agars used for the disk diffusion test, and that Vitek 2 is a valid tool for susceptibility testing in clinical laboratories.


Assuntos
Antibacterianos/farmacologia , Bactérias Gram-Negativas/efeitos dos fármacos , Minociclina/análogos & derivados , Testes de Sensibilidade a Antimicrobianos por Disco-Difusão , Humanos , Testes de Sensibilidade Microbiana/instrumentação , Testes de Sensibilidade Microbiana/métodos , Minociclina/farmacologia , Tigeciclina
11.
Plant Biol (Stuttg) ; 11(2): 194-203, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19228326

RESUMO

Activity levels of oxidative stress-related enzymes in the root apoplast during the interaction of WR315 (resistant) and JG62 (susceptible) chickpeas (Cicer arietinum L.) with the highly virulent race 5 of Fusarium oxysporum f. sp. ciceris were compared. Because this fungus develops asymptomatic infections in the chickpea root cortex in both susceptible and resistant plants, but only intrudes into the root xylem in the susceptible variety, the interactions were compared at three specific stages during disease development in JG62: (i) before symptom development (10 days after inoculation); (ii) at the time of appearance of the first disease symptoms (15-17 days after inoculation) and (iii) when all plants had developed disease symptoms (20-22 days after inoculation). Diamine oxidase (DAO), ascorbate peroxidase (APX), glutathione reductase (GR), guaiacol-dependent peroxidase and superoxide dismutase (SOD), but not catalase (CAT), were found in the apoplast of chickpea roots. In terms of APX activity, infection by the pathogen caused a different response in the incompatible compared to the compatible plant. In the case of GR, SOD and DAO activities, the pathogen caused the same response, but it developed earlier (i.e. GR and SOD) or to higher levels (i.e. DAO) in the incompatible interaction. Expression of apx, cat, sod, lipoxygenase (lox) and actin genes was also analysed in infected roots. Infection by F. oxysporum f. sp. ciceris race 5 only caused a significant change in the root expression of lox and actin genes. This up-regulation was earlier (lox) or higher (actin) in the incompatible than in the compatible interaction. Thus, changes in oxidative metabolism differ in compatible and incompatible interactions in Fusarium wilt of chickpea.


Assuntos
Amina Oxidase (contendo Cobre)/metabolismo , Antioxidantes/metabolismo , Cicer/metabolismo , Fusarium , Estresse Oxidativo , Doenças das Plantas , Proteínas de Plantas/metabolismo , Cicer/genética , Cicer/microbiologia , Espaço Extracelular , Expressão Gênica , Genes de Plantas , Glucosefosfato Desidrogenase/metabolismo , Interações Hospedeiro-Patógeno , Oxirredução , Estresse Oxidativo/genética , Estresse Oxidativo/fisiologia , Proteínas de Plantas/genética , Raízes de Plantas , RNA Mensageiro/metabolismo
12.
J Dairy Sci ; 92(4): 1575-80, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19307638

RESUMO

The objectives were to evaluate the effect of high linear somatic cell counts (LNSCC > or =4.5) during early lactation on reproductive performance and to estimate their association with the risk of abortion in a population of central-southern Chilean dairy cattle. The analysis included records from a population of 157 farms and considered 1,127,405 test-day records including 101,944 lactations that began between 1997 and 2006. After data edits, the analyses of calving to first service and calving to conception intervals consisted of 88,633 and 70,877 lactations, respectively. Once controlling for significant variables, time to first breeding was 21.8 d longer in cows with at least 1 high LNSCC before the first breeding compared with controls. Cows with at least 1 high LNSCC before the fertile breeding had an increment in time to conception of 48.7 d and required, on average, 0.49 more services to conceive. The odds of conception at first service in cows with a high LNSCC within 30 d before [after] breeding were 0.85 (0.81 to 0.89; 95% confidence interval ) [0.82 (0.78 to 0.87; 95% confidence interval)] times the odds of conception for cows without a high LNSCC during that period. The Cox proportional hazard model indicated that after correction by calving year, lactation number, and milk yield standardized to 305 d, the risk of pregnancy decreased by 44% if a high LNSCC occurred before breeding. Cows registering a high LNSCC during the first 90 d of gestation had an increased risk of abortion, being 1.22 (1.07 to 1.35; 95% confidence interval) times more likely to abort than nonaffected cows. It is concluded that subclinical mastitis, measured as LNSCC >/=4.5, had a significant effect on reproductive performance in Chilean dairy cattle.


Assuntos
Leite/citologia , Reprodução/fisiologia , Aborto Animal/epidemiologia , Aborto Animal/etiologia , Animais , Bovinos , Contagem de Células/veterinária , Chile/epidemiologia , Indústria de Laticínios , Feminino , Fertilização/fisiologia , Estimativa de Kaplan-Meier , Mastite Bovina/complicações , Gravidez , Análise de Regressão , Estudos Retrospectivos , Fatores de Risco , Fatores de Tempo
13.
Phytopathology ; 98(6): 709-18, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18944296

RESUMO

Fusarium oxysporum f. sp. ciceris, and the root-knot nematode Meloidogyne artiellia, coinfect chickpea crops in several countries of the Mediterranean Basin. The influence of root infection by M. artiellia on the reactions of chickpea genotypes with different reaction to infection with F. oxysporum f. sp. ciceris races 0, 1A, and 2 was investigated under controlled environmental conditions. Results demonstrated that co-infection of chickpea genotypes resistant to specific fungal races by M. artiellia did not influence the Fusarium wilt reaction of the plant, irrespective of the F. oxysporum f. sp. ciceris race assayed. However, in some of the assayed combinations, coinfection by both pathogens significantly affected the level of colonization by the fungus or reproduction of the nematode in the root system. Thus, coinfection of chickpea plants with Foc-0 and M. artiellia significantly decreased the level of colonization of the root system by F. oxysporum f. sp. ciceris in genotypes 'CA 336.14.3.0' and 'PV 61', but not in 'ICC 14216 K' and 'UC 27'. Similarly, the nematode reproduction index was also significantly reduced by coinfection with Foc-0 in the four chickpea genotypes tested and inoculated with this race. Conversely, coinfection of chickpea plants with Foc-1A and M. artiellia significantly increased colonization of the root system by the fungus in all genotypes inoculated with this race, except for line BG 212. Altogether, we confirmed the complete resistance phenotype of 'UC 27' and 'ICC 14216 K' to Foc-0, and of 'ICC 14216 K' to Foc-1A and Foc-2, and demonstrated that this resistance was not modified by coinfection of the resistant plant with M. artiellia.


Assuntos
Cicer/microbiologia , Cicer/parasitologia , Fusarium/fisiologia , Tylenchoidea/fisiologia , Animais , Cicer/genética , Genótipo , Interações Hospedeiro-Parasita , Interações Hospedeiro-Patógeno , Imunidade Inata/genética , Doenças das Plantas/genética , Doenças das Plantas/microbiologia , Doenças das Plantas/parasitologia , Raízes de Plantas/genética , Raízes de Plantas/microbiologia , Raízes de Plantas/parasitologia
14.
Phytopathology ; 98(2): 167-80, 2008 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18943193

RESUMO

The development of Verticillium wilt epidemics in olive cv. Arbequina was studied from November 1999 to May 2003 in a drip-irrigated, nontillage orchard established in a soil without a history of the disease at Córdoba, southern Spain. Disease incidence measured at 1-month-intervals increased from 0.2 to 7.8% during this period. Verticillium dahliae infecting the trees was characterized as defoliating (D) or nondefoliating (ND) pathotypes by a specific, multiplex-polymerase chain reaction (PCR) assay. Of the symptomatic trees, 87.2 and 12.8% were infected by the D or ND pathotypes, respectively. Dynamics of disease incidence were described by a generalized logistic model with a multiple sigmoid pattern. In the fitted model, the infection rate was highest in the winter to spring period and decreased to minimum values in the summer to fall period. Binary data of disease incidence was analyzed for point pattern and spatial correlation, either directly or after parsing them in contiguous quadrats. Overall, ordinary runs analysis indicated a departure from randomness of disease within rows. The binomial index of dispersion, interclass correlation, and Taylor's power law for various quadrat sizes suggested aggregation of diseased trees within the quadrat sizes tested. Spatial analysis by distance indices showed a nonrandom arrangement of quadrats containing infected trees. Spatial pattern was characterized by the occurrence of several clusters of infected trees. Increasing clustering over time was generally suggested by stronger values of clustering index over time and by the increase in the size of patch clusters. Significant spatial association was found in the clustering of diseased trees over time across cropping seasons; however, clustering was significant only for infections by D V. dahliae, indicating that infections by the D pathotype were aggregated around initial infections. The number and size of clusters of D V. dahliae-infected trees increased over time. Microsatellite-primed PCR assays of a representative number of V. dahliae isolates from diseased trees indicated that the majority of infecting D isolates shared the fingerprinting profile with D V. dahliae isolated from soil of a naturally infested cotton field in close proximity to the orchard, suggesting that short distance dispersal of the pathogen from this soil to the olive orchard may have occurred.


Assuntos
Olea/microbiologia , Verticillium/genética , Variação Genética/genética , Doenças das Plantas/microbiologia , Estações do Ano , Espanha , Verticillium/isolamento & purificação
16.
Nat Plants ; 4(7): 432-439, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29942047

RESUMO

Plant pathogens cause significant losses to agricultural yields and increasingly threaten food security1, ecosystem integrity and societies in general2-5. Xylella fastidiosa is one of the most dangerous plant bacteria worldwide, causing several diseases with profound impacts on agriculture and the environment6. Primarily occurring in the Americas, its recent discovery in Asia and Europe demonstrates that X. fastidiosa's geographic range has broadened considerably, positioning it as a reemerging global threat that has caused socioeconomic and cultural damage7,8. X. fastidiosa can infect more than 350 plant species worldwide9, and early detection is critical for its eradication8. In this article, we show that changes in plant functional traits retrieved from airborne imaging spectroscopy and thermography can reveal X. fastidiosa infection in olive trees before symptoms are visible. We obtained accuracies of disease detection, confirmed by quantitative polymerase chain reaction, exceeding 80% when high-resolution fluorescence quantified by three-dimensional simulations and thermal stress indicators were coupled with photosynthetic traits sensitive to rapid pigment dynamics and degradation. Moreover, we found that the visually asymptomatic trees originally scored as affected by spectral plant-trait alterations, developed X. fastidiosa symptoms at almost double the rate of the asymptomatic trees classified as not affected by remote sensing. We demonstrate that spectral plant-trait alterations caused by X. fastidiosa infection are detectable previsually at the landscape scale, a critical requirement to help eradicate some of the most devastating plant diseases worldwide.


Assuntos
Doenças das Plantas/microbiologia , Xylella , Fluorescência , Imageamento Tridimensional , Olea/microbiologia , Imagens de Satélites , Análise Espectral/métodos , Termografia
17.
J Diabetes Complications ; 31(9): 1423-1429, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28648555

RESUMO

AIMS: To evaluate and compare the association of four potential insulin resistance (IR) biomarkers (pigment-epithelium-derived factor [PEDF], retinol-binding-protein-4 [RBP-4], chitinase-3-like protein 1 [YKL-40] and brain-derived neurotrophic factor [BDNF]) with objective measures of IR. METHODS: We studied 81 subjects with different metabolic profiles. All participants underwent a 5-point OGTT with calculation of multiple IR indexes. A subgroup of 21 participants additionally underwent a hyperinsulinemic-euglycemic clamp. IR was defined as belonging to the highest quartile of incremental area under the insulin curve (iAUCins), or to the lowest quartile of the insulin sensitivity index (ISI). RESULTS: PEDF was associated with adiposity variables. PEDF and RBP4 increased linearly across quartiles of iAUCins (for PEDF p-trend=0.029; for RBP-4 p-trend=0.053). YKL-40 and BDNF were not associated with any adiposity or IR variable. PEDF and RBP-4 levels identified individuals with IR by the iAUCins definition: A PEDF cutoff of 11.9ng/mL had 60% sensitivity and 68% specificity, while a RBP-4 cutoff of 71.6ng/mL had 70% sensitivity and 57% specificity. In multiple regression analyses simultaneously including clinical variables and the studied biomarkers, only BMI, PEDF and RBP-4 remained significant predictors of IR. CONCLUSIONS: Plasma PEDF and RBP4 identified IR in subjects with no prior diagnosis of diabetes.


Assuntos
Biomarcadores/sangue , Fator Neurotrófico Derivado do Encéfalo/sangue , Proteína 1 Semelhante à Quitinase-3/sangue , Técnicas de Diagnóstico Endócrino , Proteínas do Olho/sangue , Resistência à Insulina , Fatores de Crescimento Neural/sangue , Proteínas Plasmáticas de Ligação ao Retinol/análise , Serpinas/sangue , Adulto , Idoso , Feminino , Técnica Clamp de Glucose , Intolerância à Glucose/sangue , Intolerância à Glucose/complicações , Intolerância à Glucose/diagnóstico , Teste de Tolerância a Glucose , Humanos , Masculino , Pessoa de Meia-Idade , Obesidade/sangue , Obesidade/complicações , Obesidade/metabolismo , Estado Pré-Diabético/sangue , Estado Pré-Diabético/complicações , Estado Pré-Diabético/diagnóstico , Proteínas Plasmáticas de Ligação ao Retinol/metabolismo
18.
Vet Parasitol ; 141(1-2): 42-7, 2006 Oct 10.
Artigo em Inglês | MEDLINE | ID: mdl-16797845

RESUMO

Cats are important in the epidemiology of Toxoplasma gondii infection because they are the only hosts that can excrete the environmentally-resistant oocysts. In the present study, prevalence of T. gondii was determined in serum, feces, and tissues of 170 unwanted cats from Colombia, South America. Antibodies to T. gondii were assayed by the modified agglutination test and found in 77 of 170 (45.2%) cats with titers of <1:5 in 93, 1:5 in eight, 1:10 in 17, 1:20 in 10, 1:40 in seven, 1:80 in four, 1:160 in eight, 1:320 in six, and 1:640 or higher in 17 cats. T. gondii oocysts were not found in feces of any cat as ascertained by bioassay in mice. Tissues (brain, heart, tongue) of 116 cats were bioassayed in mice or cats. T. gondii was isolated from tissues of 15 of the 42 cats with titers of 1:40 or higher and not from any of the 90 cats titers of 1:20 or lower. Of the 29 cats whose tissues were bioassayed individually, T. gondii was isolated from the tongues of nine, hearts of eight, and brains of five. Mice inoculated with tissues of 12 of 15 infected cats died of toxoplasmosis; with nine T. gondii isolates all infected mice died. Overall, 65 of 92 (70%) of T. gondii-infected mice died of toxoplasmosis. Genotyping of these 15 isolates using polymorphisms at the SAG1, SAG2, SAG3, BTUB, and GRA6 loci revealed that three isolates (TgCtCo1, 2, and 7) had Type I alleles and one isolate (TgCtCo8) had Type II allele at all five loci. Eleven isolates contained the combination of Type I and III alleles and were divided into three genotypes, with TgCtCo3,5,6,9,12,13 and 15 had alleles I, I, III, I and III, TgCtCo4,10,11 had alleles I, III, III, I and I, and TgCtCo14 had alleles I, III, III, III, and III, at loci SAG1, SAG2, SAG3, BTUB and GRA6, respectively. All infected mice from each group had identical genotype except one mouse infected with TgCtCo5 had a Type III allele at locus BTUB and a unique allele (u-1) at locus SAG1 indicating mixed infection for TgCtCo5, whereas the rest seven mice had a Type I alleles at both loci.


Assuntos
Anticorpos Antiprotozoários/sangue , Doenças do Gato/epidemiologia , Fezes/parasitologia , Toxoplasma , Toxoplasmose Animal/epidemiologia , Testes de Aglutinação/veterinária , Animais , Bioensaio/métodos , Bioensaio/veterinária , Gatos , Colômbia/epidemiologia , Reservatórios de Doenças/veterinária , Frequência do Gene , Genótipo , Camundongos , Especificidade de Órgãos , Polimorfismo Genético , Prevalência , Toxoplasma/classificação , Toxoplasma/genética , Toxoplasma/imunologia , Toxoplasma/isolamento & purificação
19.
Plant Dis ; 90(7): 975, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-30781054

RESUMO

During the 2005-2006 autumn to winter lettuce-growing (Lactuca sativa cv. Iceberg) season, severely stunted and yellowing lettuce plants with disease incidence ranging from 80 to100% were observed in four commercial, fall-sown fields at Almodóvar del Río (Córdoba Province) in southern Spain. Early symptoms consisted of severely reduced growth of the plants that continued with extensive leaf yellowing and the absence of tight-head formation. Attacks by the disease were estimated to cause near complete loss of the crop yields since the lettuce head produced in affected fields were unmarketable. Observations of affected lettuce plants revealed high parasitism of the root system by a root-knot nematode (Meloidogyne sp.) in the main and feeder roots as well as heavy soil infestations by the nematode. The nematode was identified by the female perineal pattern, esterases phenotype, and a sequence-characterized amplified region polymerase chain reaction (SCAR-PCR) technique (1,2,4). Measurements and morphological observations of 20 second-stage juveniles (J2s) (body length = 463 ± 28 µm, dorsal gland orifice from stylet base = 2.8 ± 0.6 µm, stylet length = 10.4 ± 0.5 µm, tail length = 54.4 ± 0.6 µm; hyaline tail terminus = 9.4 ± 0.6 µm) and 10 adult females (stylet length = 14.5 ± 0.7 µm, dorsal gland orifice from stylet base = 4.7 ± 0.5 µm, and perineal pattern with low and rounded dorsal arch with coarse striae) conformed to the description of Meloidogyne arenaria (3). On the basis of the characteristics of the perineal pattern, the 2-band esterase phenotype, and the 420-bp SCAR fragment, the causal agent was identified as the peanut root-knot nematode M. arenaria. Nematodes were extracted from soil and root samples by standard procedures and their populations quantified. M. arenaria was detected in nearly all soil and root samples assessed, with nematode population densities ranging from 206 to 1,072 eggs and J2s per 5 g of fresh roots. Different Meloidogyne spp. have been reported parasitizing lettuce roots, especially M. hapla in northern areas (2); however, to our knowledge this is the first time that M. arenaria is reported parasitizing lettuce roots in Spain and elsewhere. References: (1) P. R. Esbenshade and A. C. Triantaphyllou. J. Nematol. 22:10, 1990. (2) N. A. Mitkowski et al. Plant Dis. 86:840, 2002. (3) K. J. Orton Williams. Meloidogyne arenaria. CIH Descriptions of Plant-Parasitic Nematodes. Set 5, No. 62. Commonwealth Institute of Helminthology, St. Albans, 1975. (4) C. Zijlstra et al. Nematology 2:847, 2000.

20.
Plant Dis ; 90(8): 1112, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30781327

RESUMO

Broomrapes (Orobanche spp., Orobanchaceae) are chlorophyll-lacking, obligately parasitic flowering plants that infect roots of many dicotyledoneous species and cause severe damage to vegetable and field crops worldwide, but particularly in North Africa, southern and eastern Europe, and the Middle East. (1). Orobanche crenata is one of the most important broomrapes and mainly infects legume crops (2). In January 2006, we observed severe broomrape attacks in four commercial fields of fall-sown lettuce (Lactuca sativa cv. Iceberg) crops at Almodóvar del Río (Córdoba Province) in southern Spain. Infected lettuce plants showed severe stunting, foliar yellowing, and had loose-formed heads. Infection of lettuce plants by Orobanche sp. was confirmed by removing plants to verify the attachment of broomrapes to lettuce roots. There were one to four broomrapes per lettuce plant. Incidence of infected lettuce ranged from 10 to 20% in different areas of the fields. Morphological observations of broomrape plants identified the parasite as O. crenata. The main botanical features were as follows: plants 20 to 40 cm tall; corolla 20 to 28 mm, white, lips with lilac, divergent veins, lower lip large with suborbicular lobes, not ciliate; filaments hairy, obliquely inserted 2 to 4 mm above the base of corolla, with short glandular hairs in the upper third; anthers glabrous, 2 to 2.5 mm in length, and stigma yellow or pinkish at anthesis (2). O. crenata also was observed infecting faba bean (Vicia faba) plants in a field in close proximity to the affected lettuce fields. The complete 5.8S ribosomal DNA gene and internal transcribed spacers (ITS) 1 and 2 of O. crenata were sequenced using adventitious roots and stem tissues sampled from infected faba bean and lettuce plants (Genbank Accession Nos. DQ458908 and DQ458909) by standard protocols (3). A nucleotide BLAST search revealed that both sequences were identical and share 100% similarity with three reported ITS1-5.8S-ITS2 sequences from two Orobanche spp. (O. crenata and O. minor; Genbank Accession Nos. AY209267, AY209266, and AY209272). On the basis of the morphological characters described above, the parasite was O. crenata and not O. minor. O. crenata has been reported infecting many legume crops in southern Spain, including faba bean, pea, lentil, and vetch. To our knowledge, this is the first report of O. crenata infecting lettuce in Spain and elsewhere. The high incidence of O. crenata on legume crops, and the severe infections found on lettuce plants suggest that this parasitic plant may be an important constraint for fall-sown lettuce in southern Spain. References: (1) A. O. Chater and D. A. Webb. Orobanchaceae. In: Flora Europaea, T. G. Tutin et al., eds. Vol. 3. Cambridge University Press, Cambridge, 1972. (2) A. J. Pujadas-Salvà. Orobanchaceae L. In: Plantas Parásitas de la Península Ibérica y Baleares. J. A. López Sáez et al., eds. Mundi-Prensa, Madrid, 2002. (3) G. M. Schneeweiss et al. Mol. Phylogenet. Evol. 30:465, 2004.

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