Detalhe da pesquisa
1.
Contrastive learning in protein language space predicts interactions between drugs and protein targets.
Proc Natl Acad Sci U S A
; 120(24): e2220778120, 2023 Jun 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-37289807
2.
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.
Bioinformatics
; 39(11)2023 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-37897686
3.
Topsy-Turvy: integrating a global view into sequence-based PPI prediction.
Bioinformatics
; 38(Suppl 1): i264-i272, 2022 06 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-35758793
4.
GLIDER: function prediction from GLIDE-based neighborhoods.
Bioinformatics
; 38(13): 3395-3406, 2022 06 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-35575379
5.
Network propagation: a universal amplifier of genetic associations.
Nat Rev Genet
; 18(9): 551-562, 2017 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-28607512
6.
Bioengineered models of Parkinson's disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment.
Cell Mol Life Sci
; 79(2): 78, 2022 Jan 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-35044538
7.
Assessment of network module identification across complex diseases.
Nat Methods
; 16(9): 843-852, 2019 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31471613
8.
GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks.
Bioinformatics
; 36(Suppl_1): i464-i473, 2020 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32657369
9.
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence.
Bioinformatics
; 30(12): i219-27, 2014 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-24931987
10.
Compressive genomics for protein databases.
Bioinformatics
; 29(13): i283-90, 2013 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-23812995
11.
Insulin signaling and pharmacology in humans and in corals.
PeerJ
; 12: e16804, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38313028
12.
Characterizing transcriptomic responses to sediment stress across location and morphology in reef-building corals.
PeerJ
; 12: e16654, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38313033
13.
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data.
BMC Bioinformatics
; 14: 23, 2013 Jan 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-23331614
14.
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
Bioinformatics
; 28(9): 1216-22, 2012 May 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-22408192
15.
Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system.
Proc Natl Acad Sci U S A
; 107(9): 4069-74, 2010 Mar 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-20147619
16.
Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome.
PLoS One
; 18(2): e0270965, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-36735673
17.
Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment.
BMC Bioinformatics
; 13: 259, 2012 Oct 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-23039758
18.
STITCHER: Dynamic assembly of likely amyloid and prion ß-structures from secondary structure predictions.
Proteins
; 80(2): 410-20, 2012 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-22095906
19.
Bioinformatics of Corals: Investigating Heterogeneous Omics Data from Coral Holobionts for Insight into Reef Health and Resilience.
Annu Rev Biomed Data Sci
; 5: 205-231, 2022 08 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35537462
20.
Cognitive cascades: How to model (and potentially counter) the spread of fake news.
PLoS One
; 17(1): e0261811, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-34995299