Detalhe da pesquisa
1.
On the influence of several factors on pathway enrichment analysis.
Brief Bioinform
; 23(3)2022 05 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-35453140
2.
Ensembles of knowledge graph embedding models improve predictions for drug discovery.
Brief Bioinform
; 23(6)2022 11 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36384050
3.
On the correspondence between the transcriptomic response of a compound and its effects on its targets.
BMC Bioinformatics
; 24(1): 207, 2023 May 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-37208587
4.
STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs.
Bioinformatics
; 38(6): 1648-1656, 2022 03 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34986221
5.
Integrative data semantics through a model-enabled data stewardship.
Bioinformatics
; 38(15): 3850-3852, 2022 08 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35652780
6.
Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery.
PLoS Comput Biol
; 18(2): e1009909, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35213534
7.
Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms.
Nucleic Acids Res
; 49(14): 7939-7953, 2021 08 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-34197603
8.
Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets.
BMC Bioinformatics
; 23(1): 231, 2022 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-35705903
9.
MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms.
Bioinformatics
; 37(1): 137-139, 2021 Apr 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-33367476
10.
CLEP: a hybrid data- and knowledge-driven framework for generating patient representations.
Bioinformatics
; 37(19): 3311-3318, 2021 Oct 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-33964127
11.
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology.
Bioinformatics
; 37(9): 1332-1334, 2021 06 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32976572
12.
Drug2ways: Reasoning over causal paths in biological networks for drug discovery.
PLoS Comput Biol
; 16(12): e1008464, 2020 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-33264280
13.
PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures.
BMC Bioinformatics
; 21(1): 231, 2020 Jun 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-32503412
14.
BioKEEN: a library for learning and evaluating biological knowledge graph embeddings.
Bioinformatics
; 35(18): 3538-3540, 2019 09 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30768158
15.
PathMe: merging and exploring mechanistic pathway knowledge.
BMC Bioinformatics
; 20(1): 243, 2019 May 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31092193
16.
Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment.
Bioinformatics
; 33(22): 3679-3681, 2017 Nov 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28651363
17.
Weighting Low-Intensity MS/MS Ions and m/z Frequency for Spectral Library Annotation.
J Am Soc Mass Spectrom
; 35(2): 266-274, 2024 Feb 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-38271611
18.
Multi-ontology embeddings approach on human-aligned multi-ontologies representation for gene-disease associations prediction.
Heliyon
; 9(11): e21502, 2023 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-38027969
19.
Exploring the known chemical space of the plant kingdom: insights into taxonomic patterns, knowledge gaps, and bioactive regions.
J Cheminform
; 15(1): 107, 2023 Nov 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37950325
20.
A Comprehensive Evaluation of Biomedical Entity Linking Models.
Proc Conf Empir Methods Nat Lang Process
; 2023: 14462-14478, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-38756862