Detalhe da pesquisa
1.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res
; 50(W1): W108-W114, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524558
2.
Epidemiological modeling in StochSS Live!
Bioinformatics
; 37(17): 2787-2788, 2021 Sep 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-33512399
3.
Phylogenomics and historical biogeography of West Indian Rock Iguanas (genus Cyclura).
Mol Phylogenet Evol
; 174: 107548, 2022 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-35690377
4.
Coordinating cell polarization and morphogenesis through mechanical feedback.
PLoS Comput Biol
; 17(1): e1007971, 2021 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-33507956
5.
An arbitrary Lagrangian Eulerian smoothed particle hydrodynamics (ALE-SPH) method with a boundary volume fraction formulation for fluid-structure interaction.
Eng Anal Bound Elem
; 128: 274-289, 2021 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-34040286
6.
The effect of cell geometry on polarization in budding yeast.
PLoS Comput Biol
; 14(6): e1006241, 2018 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29889845
7.
Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
PLoS Comput Biol
; 12(11): e1005122, 2016 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-27893768
8.
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
PLoS Comput Biol
; 12(12): e1005220, 2016 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-27930676
9.
A framework for discrete stochastic simulation on 3D moving boundary domains.
J Chem Phys
; 145(18): 184113, 2016 Nov 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-27846706
10.
Spatial stochastic dynamics enable robust cell polarization.
PLoS Comput Biol
; 9(7): e1003139, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23935469
11.
GillesPy2: A Biochemical Modeling Framework for Simulation Driven Biological Discovery.
Lett Biomath
; 10(1): 87-103, 2023 Jan 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37655179
12.
Saving the Devils Is in the Details: Tasmanian Devil Facial Tumor Disease Can Be Eliminated with Interventions.
Lett Biomath
; 9(1): 121-140, 2022 Feb 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-37655234
13.
A positive feedback loop involving the Spa2 SHD domain contributes to focal polarization.
PLoS One
; 17(2): e0263347, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35134079
14.
Noise resistant synchronization and collective rhythm switching in a model of animal group locomotion.
R Soc Open Sci
; 9(3): 211908, 2022 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-35291326
15.
Progressive arm muscle weakness in ALS follows the same sequence regardless of onset site: use of TOMS, a novel analytic method to track limb strength.
Amyotroph Lateral Scler Frontotemporal Degener
; 22(5-6): 380-387, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33620270
16.
The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.
J Chem Phys
; 132(7): 074101, 2010 Feb 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-20170209
17.
Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method.
Data Brief
; 22: 11-15, 2019 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-30581900
18.
Sources of intraspecific variation in the collective tempo and synchrony of ant societies.
Behav Ecol
; 30(6): 1682-1690, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-31723317
19.
Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians.
J R Soc Interface
; 14(133)2017 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-28855388
20.
MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDME.
SIAM J Sci Comput
; 38(3): C179-C202, 2016.
Artigo
em Inglês
| MEDLINE | ID: mdl-28190948