Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data.

Gouveia, Duarte; Grenga, Lucia; Gaillard, Jean-Charles; Gallais, Fabrice; Bellanger, Laurent; Pible, Olivier; Armengaud, Jean.

Proteomics ; 20(14): e2000107, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-32462744

2.

Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms.

Cogne, Yannick; Gouveia, Duarte; Chaumot, Arnaud; Degli-Esposti, Davide; Geffard, Olivier; Pible, Olivier; Almunia, Christine; Armengaud, Jean.

Proteomics ; 20(10): e1900261, 2020 05.

Artigo em Inglês | MEDLINE | ID: mdl-32249536

3.

Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window.

Gouveia, Duarte; Miotello, Guylaine; Gallais, Fabrice; Gaillard, Jean-Charles; Debroas, Stéphanie; Bellanger, Laurent; Lavigne, Jean-Philippe; Sotto, Albert; Grenga, Lucia; Pible, Olivier; Armengaud, Jean.

J Proteome Res ; 19(11): 4407-4416, 2020 11 06.

Artigo em Inglês | MEDLINE | ID: mdl-32697082

4.

Quick microbial molecular phenotyping by differential shotgun proteomics.

Gouveia, Duarte; Grenga, Lucia; Pible, Olivier; Armengaud, Jean.

Environ Microbiol ; 22(8): 2996-3004, 2020 08.

Artigo em Inglês | MEDLINE | ID: mdl-32133743

5.

Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods.

Gouveia, Duarte; Chaumot, Arnaud; Charnot, Aurore; Almunia, Christine; François, Adeline; Navarro, Lionel; Armengaud, Jean; Salvador, Arnaud; Geffard, Olivier.

Environ Sci Technol ; 51(22): 13417-13426, 2017 Nov 21.

Artigo em Inglês | MEDLINE | ID: mdl-29068690

6.

Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry.

Charnot, Aurore; Gouveia, Duarte; Armengaud, Jean; Almunia, Christine; Chaumot, Arnaud; Lemoine, Jérôme; Geffard, Olivier; Salvador, Arnaud.

Anal Bioanal Chem ; 409(16): 3969-3991, 2017 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-28417180

7.

The efficiency of trypsin digestion for mass-spectrometry-based identification and quantification of oxidized proteins: evaluation of the digestion of oxidized bovine serum albumin.

Gouveia, Duarte D; Silva, André M N; Vitorino, Rui; Domingues, M Rosário M; Domingues, Pedro.

Eur J Mass Spectrom (Chichester) ; 20(3): 271-8, 2014.

Artigo em Inglês | MEDLINE | ID: mdl-24892298

8.

Profiling SARS-CoV-2 Infection by High-Throughput Shotgun Proteomics.

Grenga, Lucia; Gouveia, Duarte; Armengaud, Jean.

Methods Mol Biol ; 2452: 167-182, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-35554907

9.

High-resolution shotgun proteomics reveals that increased air [CO₂] amplifies the acclimation response of coffea species to drought regarding antioxidative, energy, sugar, and lipid dynamics.

Marques, Isabel; Rodrigues, Ana P; Gouveia, Duarte; Lidon, Fernando C; Martins, Sónia; Semedo, Magda C; Gaillard, Jean-Charles; Pais, Isabel P; Semedo, José N; Scotti-Campos, Paula; Reboredo, Fernando H; Partelli, Fábio L; DaMatta, Fábio M; Armengaud, Jean; Ribeiro-Barros, Ana I; Ramalho, José C.

J Plant Physiol ; 276: 153788, 2022 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-35944291

10.

Intrinsic non-stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. is strengthened by elevated air [CO2].

Semedo, José N; Rodrigues, Ana P; Lidon, Fernando C; Pais, Isabel P; Marques, Isabel; Gouveia, Duarte; Armengaud, Jean; Silva, Maria J; Martins, Sónia; Semedo, Magda C; Dubberstein, Danielly; Partelli, Fábio L; Reboredo, Fernando H; Scotti-Campos, Paula; Ribeiro-Barros, Ana I; DaMatta, Fábio M; Ramalho, José C.

Tree Physiol ; 41(5): 708-727, 2021 05 14.

Artigo em Inglês | MEDLINE | ID: mdl-33215189

11.

Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host.

Gouveia, Duarte; Pible, Olivier; Culotta, Karen; Jouffret, Virginie; Geffard, Olivier; Chaumot, Arnaud; Degli-Esposti, Davide; Armengaud, Jean.

NPJ Biofilms Microbiomes ; 6(1): 23, 2020 06 05.

Artigo em Inglês | MEDLINE | ID: mdl-32504001

12.

High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics.

Faugere, Julien; Gouveia, Duarte; Ayciriex, Sophie; Chaumot, Arnaud; Almunia, Christine; François, Adeline; Armengaud, Jean; Lemoine, Jérôme; Geffard, Olivier; Degli-Esposti, Davide; Salvador, Arnaud.

J Proteomics ; 226: 103901, 2020 08 30.

Artigo em Inglês | MEDLINE | ID: mdl-32668291

13.

Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines.

Grenga, Lucia; Gallais, Fabrice; Pible, Olivier; Gaillard, Jean-Charles; Gouveia, Duarte; Batina, Hélène; Bazaline, Niza; Ruat, Sylvie; Culotta, Karen; Miotello, Guylaine; Debroas, Stéphanie; Roncato, Marie-Anne; Steinmetz, Gérard; Foissard, Charlotte; Desplan, Anne; Alpha-Bazin, Béatrice; Almunia, Christine; Gas, Fabienne; Bellanger, Laurent; Armengaud, Jean.

Emerg Microbes Infect ; 9(1): 1712-1721, 2020 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-32619390

14.

Resilient and Sensitive Key Points of the Photosynthetic Machinery of Coffea spp. to the Single and Superimposed Exposure to Severe Drought and Heat Stresses.

Dubberstein, Danielly; Lidon, Fernando C; Rodrigues, Ana P; Semedo, José N; Marques, Isabel; Rodrigues, Weverton P; Gouveia, Duarte; Armengaud, Jean; Semedo, Magda C; Martins, Sónia; Simões-Costa, Maria C; Moura, I; Pais, Isabel P; Scotti-Campos, Paula; Partelli, Fábio L; Campostrini, Eliemar; Ribeiro-Barros, Ana I; DaMatta, Fábio M; Ramalho, José C.

Front Plant Sci ; 11: 1049, 2020.

Artigo em Inglês | MEDLINE | ID: mdl-32733525

15.

Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry.

Hayoun, Karim; Gouveia, Duarte; Grenga, Lucia; Pible, Olivier; Armengaud, Jean; Alpha-Bazin, Béatrice.

Front Microbiol ; 10: 1985, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-31555227

16.

Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium.

Cogne, Yannick; Almunia, Christine; Gouveia, Duarte; Pible, Olivier; François, Adeline; Degli-Esposti, Davide; Geffard, Olivier; Armengaud, Jean; Chaumot, Arnaud.

Aquat Toxicol ; 214: 105244, 2019 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-31352074

17.

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild.

Gouveia, Duarte; Cogne, Yannick; Gaillard, Jean-Charles; Almunia, Christine; Pible, Olivier; François, Adeline; Degli-Esposti, Davide; Geffard, Olivier; Chaumot, Arnaud; Armengaud, Jean.

Data Brief ; 27: 104650, 2019 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-31687451

18.

De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups.

Cogne, Yannick; Degli-Esposti, Davide; Pible, Olivier; Gouveia, Duarte; François, Adeline; Bouchez, Olivier; Eché, Camille; Ford, Alex; Geffard, Olivier; Armengaud, Jean; Chaumot, Arnaud; Almunia, Christine.

Sci Data ; 6(1): 184, 2019 09 27.

Artigo em Inglês | MEDLINE | ID: mdl-31562330

19.

Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment.

Gouveia, Duarte; Almunia, Christine; Cogne, Yannick; Pible, Olivier; Degli-Esposti, Davide; Salvador, Arnaud; Cristobal, Susana; Sheehan, David; Chaumot, Arnaud; Geffard, Olivier; Armengaud, Jean.

J Proteomics ; 198: 66-77, 2019 04 30.

Artigo em Inglês | MEDLINE | ID: mdl-30529745

20.

Red flags.

Gouveia, Duarte Nuno.

Rev Port Cardiol ; 41(5): 435, 2022 May.

Artigo em Inglês, Português | MEDLINE | ID: mdl-36062647

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