Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness.

Bush, Alex; Monk, Wendy A; Compson, Zacchaeus G; Peters, Daniel L; Porter, Teresita M; Shokralla, Shadi; Wright, Michael T G; Hajibabaei, Mehrdad; Baird, Donald J.

Proc Natl Acad Sci U S A ; 117(15): 8539-8545, 2020 04 14.

Artigo em Inglês | MEDLINE | ID: mdl-32217735

2.

LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data.

Rudar, Josip; Porter, Teresita M; Wright, Michael; Golding, G Brian; Hajibabaei, Mehrdad.

BMC Bioinformatics ; 23(1): 110, 2022 Mar 31.

Artigo em Inglês | MEDLINE | ID: mdl-35361114

3.

Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments.

He, Xiaoping; Gilmore, Scott R; Sutherland, Terri F; Hajibabaei, Mehrdad; Miller, Kristina M; Westfall, Kristen M; Pawlowski, Jan; Abbott, Cathryn L.

Mol Ecol ; 30(13): 3158-3174, 2021 07.

Artigo em Inglês | MEDLINE | ID: mdl-33481325

4.

Using DNA-barcoded Malaise trap samples to measure impact of a geothermal energy project on the biodiversity of a Costa Rican old-growth rain forest.

Janzen, Daniel H; Hallwachs, Winnie; Pereira, Guillermo; Blanco, Roger; Masis, Alejandro; Chavarria, Maria Marta; Chavarria, Felipe; Guadamuz, Adrian; Araya, Magaly; Smith, M Alex; Valerio, Johan; Guido, Hartman; Sanchez, Eddy; Bermudez, Sergio; Perez, Kate; Manjunath, Ramya; Ratnasingham, Sujeevan; St Jacques, Brianne; Milton, Megan; DeWaard, Jeremy R; Zakharov, Evgeny; Naik, Suresh; Hajibabaei, Mehrdad; Hebert, Paul D N; Hasegawa, Motohiro.

Genome ; 63(9): 407-436, 2020 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-32579871

5.

Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology.

Janzen, Daniel H; Burns, John M; Cong, Qian; Hallwachs, Winnie; Dapkey, Tanya; Manjunath, Ramya; Hajibabaei, Mehrdad; Hebert, Paul D N; Grishin, Nick V.

Proc Natl Acad Sci U S A ; 114(31): 8313-8318, 2017 08 01.

Artigo em Inglês | MEDLINE | ID: mdl-28716927

6.

Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach ¹.

Farrell, Maxwell J; Govender, Danny; Hajibabaei, Mehrdad; van der Bank, Michelle; Davies, T Jonathan.

Genome ; 62(3): 229-242, 2019 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-30495980

7.

Determinants of Soil Bacterial and Fungal Community Composition Toward Carbon-Use Efficiency Across Primary and Secondary Forests in a Costa Rican Conservation Area.

McGee, Katie M; Eaton, William D; Shokralla, Shadi; Hajibabaei, Mehrdad.

Microb Ecol ; 77(1): 148-167, 2019 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-29858646

8.

Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis.

Porter, Teresita M; Hajibabaei, Mehrdad.

Mol Ecol ; 27(2): 313-338, 2018 01.

Artigo em Inglês | MEDLINE | ID: mdl-29292539

9.

Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens.

Eaton, William D; Shokralla, Shadi; McGee, Kathleen M; Hajibabaei, Mehrdad.

Genome ; 60(10): 825-836, 2017 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-28732171

10.

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.

Gibson, Joel; Shokralla, Shadi; Porter, Teresita M; King, Ian; van Konynenburg, Steven; Janzen, Daniel H; Hallwachs, Winnie; Hajibabaei, Mehrdad.

Proc Natl Acad Sci U S A ; 111(22): 8007-12, 2014 Jun 03.

Artigo em Inglês | MEDLINE | ID: mdl-24808136

11.

The golden age of DNA metasystematics.

Hajibabaei, Mehrdad.

Trends Genet ; 28(11): 535-7, 2012 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-22951138

12.

Naphthenic Acid Mixtures from Oil Sands Process-Affected Water Enhance Differentiation of Mouse Embryonic Stem Cells and Affect Development of the Heart.

Mohseni, Paria; Hahn, Noah A; Frank, Richard A; Hewitt, L Mark; Hajibabaei, Mehrdad; Van Der Kraak, Glen.

Environ Sci Technol ; 49(16): 10165-72, 2015 Aug 18.

Artigo em Inglês | MEDLINE | ID: mdl-26182351

13.

Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morphologically cryptic species.

Bertrand, Claudia; Janzen, Daniel H; Hallwachs, Winnie; Burns, John M; Gibson, Joel F; Shokralla, Shadi; Hajibabaei, Mehrdad.

BMC Evol Biol ; 14: 153, 2014 07 09.

Artigo em Inglês | MEDLINE | ID: mdl-25005355

14.

A striking new genus and species of tiger-moth (Lepidoptera: Erebidae, Arctiinae, Arctiini) from the Caribbean, with molecular and morphological analysis of its systematic placement.

Vincent, Benoit; Hajibabaei, Mehrdad; Rougerie, Rodolphe.

Zootaxa ; 3760: 289-300, 2014 Jan 31.

Artigo em Inglês | MEDLINE | ID: mdl-24870083

15.

Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source.

Rudar, Josip; Kruczkiewicz, Peter; Vernygora, Oksana; Golding, G Brian; Hajibabaei, Mehrdad; Lung, Oliver.

Microbiol Spectr ; 12(4): e0358423, 2024 Apr 02.

Artigo em Inglês | MEDLINE | ID: mdl-38436242

16.

Looking for the sponge loop: analyses of detritus on a Caribbean forereef using stable isotope and eDNA metabarcoding techniques.

Olinger, Lauren K; McClenaghan, Beverly; Hajibabaei, Mehrdad; Fahner, Nicole; Berghuis, Lesley; Rajabi, Hoda; Erwin, Patrick; Lane, Chad S; Pawlik, Joseph R.

PeerJ ; 12: e16970, 2024.

Artigo em Inglês | MEDLINE | ID: mdl-38410802

17.

Global arthropod beta-diversity is spatially and temporally structured by latitude.

Seymour, Mathew; Roslin, Tomas; deWaard, Jeremy R; Perez, Kate H J; D'Souza, Michelle L; Ratnasingham, Sujeevan; Ashfaq, Muhammad; Levesque-Beaudin, Valerie; Blagoev, Gergin A; Bukowski, Belén; Cale, Peter; Crosbie, Denise; Decaëns, Thibaud; deWaard, Stephanie L; Ekrem, Torbjørn; El-Ansary, Hosam O; Evouna Ondo, Fidèle; Fraser, David; Geiger, Matthias F; Hajibabaei, Mehrdad; Hallwachs, Winnie; Hanisch, Priscila E; Hausmann, Axel; Heath, Mark; Hogg, Ian D; Janzen, Daniel H; Kinnaird, Margaret; Kohn, Joshua R; Larrivée, Maxim; Lees, David C; León-Règagnon, Virginia; Liddell, Michael; Lijtmaer, Darío A; Lipinskaya, Tatsiana; Locke, Sean A; Manjunath, Ramya; Martins, Dino J; Martins, Marlúcia B; Mazumdar, Santosh; McKeown, Jaclyn T A; Anderson-Teixeria, Kristina; Miller, Scott E; Milton, Megan A; Miskie, Renee; Morinière, Jérôme; Mutanen, Marko; Naik, Suresh; Nichols, Becky; Noguera, Felipe A; Novotny, Vojtech.

Commun Biol ; 7(1): 552, 2024 May 08.

Artigo em Inglês | MEDLINE | ID: mdl-38720028

18.

Decision Tree Ensembles Utilizing Multivariate Splits Are Effective at Investigating Beta Diversity in Medically Relevant 16S Amplicon Sequencing Data.

Rudar, Josip; Golding, G Brian; Kremer, Stefan C; Hajibabaei, Mehrdad.

Microbiol Spectr ; : e0206522, 2023 Mar 06.

Artigo em Inglês | MEDLINE | ID: mdl-36877086

19.

Influence of plant species, mycorrhizal inoculant, and soil phosphorus level on arbuscular mycorrhizal communities in onion and carrot roots.

Ilyas, Umbrin; du Toit, Lindsey J; Hajibabaei, Mehrdad; McDonald, Mary Ruth.

Front Plant Sci ; 14: 1324626, 2023.

Artigo em Inglês | MEDLINE | ID: mdl-38288412

20.

Comparative analysis of fish environmental DNA reveals higher sensitivity achieved through targeted sequence-based metabarcoding.

McCarthy, Avery; Rajabi, Hoda; McClenaghan, Beverly; Fahner, Nicole A; Porter, Emily; Singer, Gregory A C; Hajibabaei, Mehrdad.

Mol Ecol Resour ; 23(3): 581-591, 2023 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-36366953

BVS Doenças Infecciosas e Parasitárias

Informação e Conhecimento para a Saúde

Configurar filtros

Sua seleção (0)

Formato de exportação:

Exportar: