Detalhe da pesquisa
1.
Dynamic correlations: exact and approximate methods for mutual information.
Bioinformatics
; 40(2)2024 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-38341647
2.
Prediction of allosteric communication pathways in proteins.
Bioinformatics
; 38(14): 3590-3599, 2022 07 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-35674396
3.
Oncogenic mutations on Rac1 affect global intrinsic dynamics underlying GTP and PAK1 binding.
Biophys J
; 120(5): 866-876, 2021 03 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33515600
4.
Protein dynamics analysis identifies candidate cancer driver genes and mutations in TCGA data.
Proteins
; 89(6): 721-730, 2021 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-33550612
5.
Single-molecule probing of the conformational homogeneity of the ABC transporter BtuCD.
Nat Chem Biol
; 14(7): 715-722, 2018 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-29915236
6.
Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome.
J Chem Inf Model
; 60(12): 6447-6461, 2020 12 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-33231066
7.
Protein dynamics analysis reveals that missense mutations in cancer-related genes appear frequently on hinge-neighboring residues.
Proteins
; 87(6): 512-519, 2019 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-30785643
8.
Cullin neddylation may allosterically tune polyubiquitin chain length and topology.
Biochem J
; 474(5): 781-795, 2017 02 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-28082425
9.
NhaA antiporter functions using 10 helices, and an additional 2 contribute to assembly/stability.
Proc Natl Acad Sci U S A
; 112(41): E5575-82, 2015 Oct 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-26417087
10.
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics.
PLoS Comput Biol
; 11(10): e1004461, 2015 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-26506003
11.
Allosteric Dynamic Control of Binding.
Biophys J
; 109(6): 1190-201, 2015 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-26338442
12.
Structure, dynamics and implied gating mechanism of a human cyclic nucleotide-gated channel.
PLoS Comput Biol
; 10(12): e1003976, 2014 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-25474149
13.
MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues.
Nucleic Acids Res
; 41(Web Server issue): W249-55, 2013 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-23742907
14.
Features of large hinge-bending conformational transitions. Prediction of closed structure from open state.
Biophys J
; 106(12): 2656-66, 2014 Jun 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-24940783
15.
Dynamic fluctuations provide the basis of a conformational switch mechanism in apo cyclic AMP receptor protein.
PLoS Comput Biol
; 9(7): e1003141, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23874183
16.
Monte Carlo simulations of peptide-membrane interactions with the MCPep web server.
Nucleic Acids Res
; 40(Web Server issue): W358-63, 2012 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-22695797
17.
A model-structure of a periplasm-facing state of the NhaA antiporter suggests the molecular underpinnings of pH-induced conformational changes.
J Biol Chem
; 287(22): 18249-61, 2012 May 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-22431724
18.
Conformational control of the binding of the transactivation domain of the MLL protein and c-Myb to the KIX domain of CREB.
PLoS Comput Biol
; 8(3): e1002420, 2012.
Artigo
em Inglês
| MEDLINE | ID: mdl-22438798
19.
C(alpha)-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications.
Proc Natl Acad Sci U S A
; 107(24): 10908-13, 2010 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-20534491
20.
Computational analysis of long-range allosteric communications in CFTR.
Elife
; 122023 Dec 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-38109179