Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Prediction of DNA methylation-based tumor types from histopathology in central nervous system tumors with deep learning.

Hoang, Danh-Tai; Shulman, Eldad D; Turakulov, Rust; Abdullaev, Zied; Singh, Omkar; Campagnolo, Emma M; Lalchungnunga, H; Stone, Eric A; Nasrallah, MacLean P; Ruppin, Eytan; Aldape, Kenneth.

Nat Med ; 2024 May 17.

Artigo em Inglês | MEDLINE | ID: mdl-38760587

2.

Clinically oriented prediction of patient response to targeted and immunotherapies from the tumor transcriptome.

Dinstag, Gal; Shulman, Eldad D; Elis, Efrat; Ben-Zvi, Doreen S; Tirosh, Omer; Maimon, Eden; Meilijson, Isaac; Elalouf, Emmanuel; Temkin, Boris; Vitkovsky, Philipp; Schiff, Eyal; Hoang, Danh-Tai; Sinha, Sanju; Nair, Nishanth Ulhas; Lee, Joo Sang; Schäffer, Alejandro A; Ronai, Ze'ev; Juric, Dejan; Apolo, Andrea B; Dahut, William L; Lipkowitz, Stanley; Berger, Raanan; Kurzrock, Razelle; Papanicolau-Sengos, Antonios; Karzai, Fatima; Gilbert, Mark R; Aldape, Kenneth; Rajagopal, Padma S; Beker, Tuvik; Ruppin, Eytan; Aharonov, Ranit.

Med ; 4(1): 15-30.e8, 2023 01 13.

Artigo em Inglês | MEDLINE | ID: mdl-36513065

3.

Prediction of cancer treatment response from histopathology images through imputed transcriptomics.

Hoang, Danh-Tai; Dinstag, Gal; Hermida, Leandro C; Ben-Zvi, Doreen S; Elis, Efrat; Caley, Katherine; Sammut, Stephen-John; Sinha, Sanju; Sinha, Neelam; Dampier, Christopher H; Stossel, Chani; Patil, Tejas; Rajan, Arun; Lassoued, Wiem; Strauss, Julius; Bailey, Shania; Allen, Clint; Redman, Jason; Beker, Tuvik; Jiang, Peng; Golan, Talia; Wilkinson, Scott; Sowalsky, Adam G; Pine, Sharon R; Caldas, Carlos; Gulley, James L; Aldape, Kenneth; Aharonov, Ranit; Stone, Eric A; Ruppin, Eytan.

Res Sq ; 2023 Sep 15.

Artigo em Inglês | MEDLINE | ID: mdl-37790315

4.

Erasure machine: Inverse Ising inference from reweighting of observation frequencies.

Jo, Junghyo; Hoang, Danh-Tai; Periwal, Vipul.

Phys Rev E ; 101(3-1): 032107, 2020 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-32289940

5.

Data-driven inference of hidden nodes in networks.

Hoang, Danh-Tai; Jo, Junghyo; Periwal, Vipul.

Phys Rev E ; 99(4-1): 042114, 2019 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-31108681

6.

Network inference in stochastic systems from neurons to currencies: Improved performance at small sample size.

Hoang, Danh-Tai; Song, Juyong; Periwal, Vipul; Jo, Junghyo.

Phys Rev E ; 99(2-1): 023311, 2019 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-30934224

7.

A Local Counter-Regulatory Motif Modulates the Global Phase of Hormonal Oscillations.

Park, Dong-Ho; Song, Taegeun; Hoang, Danh-Tai; Xu, Jin; Jo, Junghyo.

Sci Rep ; 7(1): 1602, 2017 05 09.

Artigo em Inglês | MEDLINE | ID: mdl-28487511

8.

Design Principles of Pancreatic Islets: Glucose-Dependent Coordination of Hormone Pulses.

Hoang, Danh-Tai; Hara, Manami; Jo, Junghyo.

PLoS One ; 11(4): e0152446, 2016.

Artigo em Inglês | MEDLINE | ID: mdl-27035570

9.

Scaling Law for Irreversible Entropy Production in Critical Systems.

Hoang, Danh-Tai; Prasanna Venkatesh, B; Han, Seungju; Jo, Junghyo; Watanabe, Gentaro; Choi, Mahn-Soo.

Sci Rep ; 6: 27603, 2016 06 09.

Artigo em Inglês | MEDLINE | ID: mdl-27277558

10.

Traveling wave in a three-dimensional array of conformist and contrarian oscillators.

Hoang, Danh-Tai; Jo, Junghyo; Hong, Hyunsuk.

Phys Rev E Stat Nonlin Soft Matter Phys ; 91(3): 032135, 2015 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-25871082

11.

Phase transition in dimer liquids.

Hoang, Danh-Tai; Diep, H T.

J Phys Condens Matter ; 26(3): 035103, 2014 Jan 22.

Artigo em Inglês | MEDLINE | ID: mdl-24285401

12.

A conserved rule for pancreatic islet organization.

Hoang, Danh-Tai; Matsunari, Hitomi; Nagaya, Masaki; Nagashima, Hiroshi; Millis, J Michael; Witkowski, Piotr; Periwal, Vipul; Hara, Manami; Jo, Junghyo.

PLoS One ; 9(10): e110384, 2014.

Artigo em Inglês | MEDLINE | ID: mdl-25350558

13.

Partial mixing phase of binary cells in finite systems.

Hoang, Danh-Tai; Song, Juyong; Jo, Junghyo.

Phys Rev E Stat Nonlin Soft Matter Phys ; 88(6): 062725, 2013 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-24483504

14.

Re-orientation transition in molecular thin films: Potts model with dipolar interaction.

Hoang, Danh-Tai; Kasperski, Maciej; Puszkarski, Henryk; Diep, H T.

J Phys Condens Matter ; 25(5): 056006, 2013 Feb 06.

Artigo em Inglês | MEDLINE | ID: mdl-23287003

15.

Hexagonal-close-packed lattice: Ground state and phase transition.

Hoang, Danh-Tai; Diep, H T.

Phys Rev E Stat Nonlin Soft Matter Phys ; 85(4 Pt 1): 041107, 2012 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-22680420

16.

Effect of dipolar interaction in molecular crystals.

Hoang, Danh-Tai; Diep, H T.

J Phys Condens Matter ; 24(41): 415402, 2012 Oct 17.

Artigo em Inglês | MEDLINE | ID: mdl-22990281

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Prediction of DNA methylation-based tumor types from histopathology in central nervous system tumors with deep learning.

Clinically oriented prediction of patient response to targeted and immunotherapies from the tumor transcriptome.

Prediction of cancer treatment response from histopathology images through imputed transcriptomics.

Erasure machine: Inverse Ising inference from reweighting of observation frequencies.

Data-driven inference of hidden nodes in networks.

Network inference in stochastic systems from neurons to currencies: Improved performance at small sample size.

A Local Counter-Regulatory Motif Modulates the Global Phase of Hormonal Oscillations.

Design Principles of Pancreatic Islets: Glucose-Dependent Coordination of Hormone Pulses.

Scaling Law for Irreversible Entropy Production in Critical Systems.

Traveling wave in a three-dimensional array of conformist and contrarian oscillators.

Phase transition in dimer liquids.

A conserved rule for pancreatic islet organization.

Partial mixing phase of binary cells in finite systems.

Re-orientation transition in molecular thin films: Potts model with dipolar interaction.

Hexagonal-close-packed lattice: Ground state and phase transition.

Effect of dipolar interaction in molecular crystals.