First isolation and whole-genome sequencing of Trueperella abortisuis from a goat in Canada.

Objective: The present study reports the first isolation and whole-genome sequencing of a Trueperella abortisuis bacterium from a goat. Animals and sample: The T. abortisuis was isolated from the uterus of a goat following an abortion. Procedure: The T. abortisuis was identified by pure culture phenotype and MALDI-TOF analysis and further characterized by whole-genome sequencing. Results: This isolate was reliably identified as T. abortisuis and showed similar properties to type strain T. abortisuis DSM 19515T, which was recovered from a sow following an abortion. The assembled genome of this isolate was 2 564 866 bp long with a GC content of 63.9%. A total of 30 virulence-related genes were determined, suggesting the pathogenic potential of this organism. Conclusion and clinical relevance: This study details the first isolation of T. abortisuis from goats. The genotypic findings of this isolate will serve as a baseline description for any similar future studies.

Premier isolement et séquençage du génome entier de Trueperella abortisuis provenant d'une chèvre au Canada. Objectif: La présente étude rapporte le premier isolement et séquençage du génome entier d'un isolat de Trueperella abortisuis provenant d'une chèvre. Animaux et échantillon: Le T. abortisuis a été isolé de l'utérus d'une chèvre à la suite d'un avortement. Procédure: Le T. abortisuis a été identifié par un phénotype de culture pure et analyse par MALDI-TOF, puis caractérisé par séquençage du génome entier. Résultats: Cet isolat a été identifié de manière fiable comme étant T. abortisuis et a montré des propriétés similaires à la souche type T. abortisuis DSM 19515T, qui a été récupérée chez une truie après un avortement. Le génome assemblé de cet isolat mesurait 2 564 866 pb avec une teneur en GC de 63,9 %. Au total, 30 gènes liés à la virulence ont été déterminés, suggérant le potentiel pathogène de cet organisme. Conclusion et pertinence clinique: Cette étude détaille le premier isolement de T. abortisuis chez la chèvre. Les résultats génotypiques de cet isolat serviront de description de base pour toute étude future similaire.(Traduit par Dr Serge Messier).

Evaluating iQ-CheckTM real-time PCR to detect Salmonella from poultry environmental samples in Fraser Valley, British Columbia, Canada.

Salmonella is a ubiquitous pathogen that accounts for foodborne and livestock illnesses worldwide. Robust surveillance programs must be implemented to maintain human and animal health and limit economic losses. The poultry industry in particular demands the implementation of rapid Salmonella detection methods that will facilitate the timely availability of results in a manner allowing actions to be taken for the associated poultry products. One such method, the iQ-CheckTM real-time PCR, has significantly reduced turnaround times compared to conventional culture methods. In this study, a total 733 poultry environmental samples was received from farms in the Fraser Valley of British Columbia, Canada and the real-time PCR method was assessed for its ability to detect Salmonella in comparison to the currently used culture protocol. The iQ-Check real-time PCR method was effective at accurately screening out the majority of negative samples, and demonstrated a very strong correlation with the culture method. This was especially true when selective enrichment was performed before PCR, with sensitivity, specificity, and accuracy values reaching 100.0%, 98.5%, and 98.9%, respectively. These results demonstrate that rapid detection methods could be effectively introduced into current Salmonella surveillance workflows dealing with environmental poultry samples to reduce turnaround times and minimize economic impacts on producers.