Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Deep learning for automatic segmentation of the nuclear envelope in electron microscopy data, trained with volunteer segmentations.

Spiers, Helen; Songhurst, Harry; Nightingale, Luke; de Folter, Joost; Hutchings, Roger; Peddie, Christopher J; Weston, Anne; Strange, Amy; Hindmarsh, Steve; Lintott, Chris; Collinson, Lucy M; Jones, Martin L.

Traffic ; 22(7): 240-253, 2021 07.

Artigo em Inglês | MEDLINE | ID: mdl-33914396

2.

Online citizen science with the Zooniverse for analysis of biological volumetric data.

Smith, Patricia; King, Oliver N F; Pennington, Avery; Tun, Win; Basham, Mark; Jones, Martin L; Collinson, Lucy M; Darrow, Michele C; Spiers, Helen.

Histochem Cell Biol ; 160(3): 253-276, 2023 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-37284846

3.

Bridging imaging users to imaging analysis - A community survey.

Sivagurunathan, Suganya; Marcotti, Stefania; Nelson, Carl J; Jones, Martin L; Barry, David J; Slater, Thomas J A; Eliceiri, Kevin W; Cimini, Beth A.

J Microsc ; 2023 Sep 20.

Artigo em Inglês | MEDLINE | ID: mdl-37727897

4.

3D correlative light and electron microscopy of cultured cells using serial blockface scanning electron microscopy.

Russell, Matthew R G; Lerner, Thomas R; Burden, Jemima J; Nkwe, David O; Pelchen-Matthews, Annegret; Domart, Marie-Charlotte; Durgan, Joanne; Weston, Anne; Jones, Martin L; Peddie, Christopher J; Carzaniga, Raffaella; Florey, Oliver; Marsh, Mark; Gutierrez, Maximiliano G; Collinson, Lucy M.

J Cell Sci ; 130(1): 278-291, 2017 01 01.

Artigo em Inglês | MEDLINE | ID: mdl-27445312

5.

PolNet: A Tool to Quantify Network-Level Cell Polarity and Blood Flow in Vascular Remodeling.

Bernabeu, Miguel O; Jones, Martin L; Nash, Rupert W; Pezzarossa, Anna; Coveney, Peter V; Gerhardt, Holger; Franco, Claudio A.

Biophys J ; 114(9): 2052-2058, 2018 05 08.

Artigo em Inglês | MEDLINE | ID: mdl-29742399

6.

Dynamic endothelial cell rearrangements drive developmental vessel regression.

Franco, Claudio A; Jones, Martin L; Bernabeu, Miguel O; Geudens, Ilse; Mathivet, Thomas; Rosa, Andre; Lopes, Felicia M; Lima, Aida P; Ragab, Anan; Collins, Russell T; Phng, Li-Kun; Coveney, Peter V; Gerhardt, Holger.

PLoS Biol ; 13(4): e1002125, 2015 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-25884288

7.

Correction: dynamic endothelial cell rearrangements drive developmental vessel regression.

Franco, Claudio A; Jones, Martin L; Bernabeu, Miguel O; Geudens, Ilse; Mathivet, Thomas; Rosa, Andre; Lopes, Felicia M; Lima, Aida P; Ragab, Anan; Collins, Russell T; Phng, Li-Kun; Coveney, Peter V; Gerhardt, Holger.

PLoS Biol ; 13(5): e1002163, 2015 May.

Artigo em Inglês | MEDLINE | ID: mdl-25974400

8.

The crowd storms the ivory tower.

Jones, Martin L; Spiers, Helen.

Nat Methods ; 15(8): 579-580, 2018 08.

Artigo em Inglês | MEDLINE | ID: mdl-30065367

9.

Neutral processes and species sorting in benthic microalgal community assembly: effects of tidal resuspension.

Plante, Craig J; Fleer, Virginia; Jones, Martin L.

J Phycol ; 52(5): 827-839, 2016 10.

Artigo em Inglês | MEDLINE | ID: mdl-27373762

10.

Bridging Imaging Users to Imaging Analysis - A community survey.

Sivagurunathan, Suganya; Marcotti, Stefania; Nelson, Carl J; Jones, Martin L; Barry, David J; Slater, Thomas J A; Eliceiri, Kevin W; Cimini, Beth A.

bioRxiv ; 2023 Jun 05.

Artigo em Inglês | MEDLINE | ID: mdl-37333353

11.

Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation.

Franco-Barranco, Daniel; Lin, Zudi; Jang, Won-Dong; Wang, Xueying; Shen, Qijia; Yin, Wenjie; Fan, Yutian; Li, Mingxing; Chen, Chang; Xiong, Zhiwei; Xin, Rui; Liu, Hao; Chen, Huai; Li, Zhili; Zhao, Jie; Chen, Xuejin; Pape, Constantin; Conrad, Ryan; Nightingale, Luke; de Folter, Joost; Jones, Martin L; Liu, Yanling; Ziaei, Dorsa; Huschauer, Stephan; Arganda-Carreras, Ignacio; Pfister, Hanspeter; Wei, Donglai.

IEEE Trans Med Imaging ; 42(12): 3956-3971, 2023 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-37768797

12.

Sargasso Sea bacterioplankton community structure and drivers of variance as revealed by DNA metabarcoding analysis.

Gill, John Geoffrey; Hill-Spanik, Kristina M; Whittaker, Kerry A; Jones, Martin L; Plante, Craig.

PeerJ ; 10: e12835, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-35251777

13.

Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome.

Meechan, Kimberly; Guan, Wei; Riedinger, Alfons; Stankova, Vera; Yoshimura, Azumi; Pipitone, Rosa; Milberger, Arthur; Schaar, Helmuth; Romero-Brey, Inés; Templin, Rachel; Peddie, Christopher J; Schieber, Nicole L; Jones, Martin L; Collinson, Lucy; Schwab, Yannick.

Elife ; 112022 Nov 15.

Artigo em Inglês | MEDLINE | ID: mdl-36378502

14.

Democratising deep learning for microscopy with ZeroCostDL4Mic.

von Chamier, Lucas; Laine, Romain F; Jukkala, Johanna; Spahn, Christoph; Krentzel, Daniel; Nehme, Elias; Lerche, Martina; Hernández-Pérez, Sara; Mattila, Pieta K; Karinou, Eleni; Holden, Séamus; Solak, Ahmet Can; Krull, Alexander; Buchholz, Tim-Oliver; Jones, Martin L; Royer, Loïc A; Leterrier, Christophe; Shechtman, Yoav; Jug, Florian; Heilemann, Mike; Jacquemet, Guillaume; Henriques, Ricardo.

Nat Commun ; 12(1): 2276, 2021 04 15.

Artigo em Inglês | MEDLINE | ID: mdl-33859193

15.

Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures.

Karabag, Cefa; Jones, Martin L; Peddie, Christopher J; Weston, Anne E; Collinson, Lucy M; Reyes-Aldasoro, Constantino Carlos.

PLoS One ; 15(10): e0230605, 2020.

Artigo em Inglês | MEDLINE | ID: mdl-33006963

16.

Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy.

Karabag, Cefa; Jones, Martin L; Peddie, Christopher J; Weston, Anne E; Collinson, Lucy M; Reyes-Aldasoro, Constantino Carlos.

J Imaging ; 5(9)2019 Sep 12.

Artigo em Inglês | MEDLINE | ID: mdl-34460669

17.

Mycobacterium tuberculosis replicates within necrotic human macrophages.

Lerner, Thomas R; Borel, Sophie; Greenwood, Daniel J; Repnik, Urska; Russell, Matthew R G; Herbst, Susanne; Jones, Martin L; Collinson, Lucy M; Griffiths, Gareth; Gutierrez, Maximiliano G.

J Cell Biol ; 216(3): 583-594, 2017 03 06.

Artigo em Inglês | MEDLINE | ID: mdl-28242744

18.

Building bridges between cellular and molecular structural biology.

Patwardhan, Ardan; Brandt, Robert; Butcher, Sarah J; Collinson, Lucy; Gault, David; Grünewald, Kay; Hecksel, Corey; Huiskonen, Juha T; Iudin, Andrii; Jones, Martin L; Korir, Paul K; Koster, Abraham J; Lagerstedt, Ingvar; Lawson, Catherine L; Mastronarde, David; McCormick, Matthew; Parkinson, Helen; Rosenthal, Peter B; Saalfeld, Stephan; Saibil, Helen R; Sarntivijai, Sirarat; Solanes Valero, Irene; Subramaniam, Sriram; Swedlow, Jason R; Tudose, Ilinca; Winn, Martyn; Kleywegt, Gerard J.

Elife ; 62017 07 06.

Artigo em Inglês | MEDLINE | ID: mdl-28682240

19.

ultraLM and miniLM: Locator tools for smart tracking of fluorescent cells in correlative light and electron microscopy.

Brama, Elisabeth; Peddie, Christopher J; Wilkes, Gary; Gu, Yan; Collinson, Lucy M; Jones, Martin L.

Wellcome Open Res ; 1: 26, 2016 Dec 13.

Artigo em Inglês | MEDLINE | ID: mdl-28090593

20.

Synchronization of endothelial Dll4-Notch dynamics switch blood vessels from branching to expansion.

Ubezio, Benedetta; Blanco, Raquel Agudo; Geudens, Ilse; Stanchi, Fabio; Mathivet, Thomas; Jones, Martin L; Ragab, Anan; Bentley, Katie; Gerhardt, Holger.

Elife ; 52016 04 13.

Artigo em Inglês | MEDLINE | ID: mdl-27074663

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