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1.
Small ; 18(16): e2107807, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-35261157

RESUMO

Vacancy engineering can modulate the electronic structure of the material and thus contribute to the formation of coordination unsaturated sites, which makes it easier to act on the substrate. Herein, Ag2 S and Ag2 S-100, which mainly have vacancy associates VAgS and VAgSAg , respectively, are prepared and characterized by positron annihilation spectroscopy. Both experimental and theoretical calculation results indicate that Ag2 S-100 exhibits excellent antibacterial activity due to its appropriate bandgap and stronger bacteria-binding ability, which endow it with a superior antibacterial activity compared to Ag2 S in the absence of light. The in vivo antibacterial experiment using a mouse wound-infection model further confirms that Ag2 S-100 has excellent antibacterial and wound-healing properties. This research provides clues for a deeper understanding of modulating electronic structures through vacancy engineering and develops a strategy for effective treatment of bacterial infections.


Assuntos
Infecções Bacterianas , Antibacterianos/química , Antibacterianos/farmacologia , Bactérias , Eletrônica , Humanos , Cicatrização
2.
Chemistry ; 27(62): 15434-15439, 2021 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-34476846

RESUMO

Today, the threat of pathogenic bacterial infection worldwide that leads to the increase of mortality rate strongly demands the development of new antibacterial agents that can kill bacteria quickly and effectively. Although there are a lot of antibacterial agents that have been developed so far, few studies on the antibacterial performance of SnS have been investigated at 808 nm laser. Here, we synthesized SnS nanosheets with strong near-infrared absorption performance and excellent antibacterial performance via a simple solvothermal synthesis route. The as-prepared SnS nanosheets showed excellent photothermal conversion efficiency (38.7 %), photodynamic performance, and photostability, and at the same time 99.98 % and 99.7 % sterilization effect against Gram-negative Escherichia coli (E. coli) and Gram-positive Bacillus subtilis (B. subtilis) under near-infrared irradiation (808 nm, 1.5 W/cm2 ). This study suggests that SnS nanosheets could be a promising candidate for antibacterial therapy owing to the synergetic effects of photothermal and photodynamic performance.


Assuntos
Escherichia coli , Fototerapia , Antibacterianos/farmacologia , Bactérias , Raios Infravermelhos , Esterilização
3.
Curr Microbiol ; 77(8): 1902-1908, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32170406

RESUMO

A Gram-negative, aerobic, non-motile, rod-shaped, floc-forming, and non-spore-forming bacterium, designated as NLF-7-7T, was isolated from the biofilm of a sample collected from a livestock wastewater treatment plant in Nonsan, Republic of Korea. Strain NLF-7-7T, forms a visible floc and grows in the flocculated state. Cells of strain NLF-7-7T grew optimally at pH 6.5 and 30 °C and in the presence of 0.5% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain NLF-7-7T belonged to the family Comamonadaceae, and was most closely related to Comamonas badia DSM 17552T (95.8% similarity) and Comamonas nitrativorans 23310T (94.0% similarity). The phylogenetic and phenotypic data indicate strain NLF-7-7T is clearly distinguished from the Comamonas lineage. The major cellular fatty acids were C10:0 3OH, C16:0, and summed feature 3 (C16:1 ω6c/C16:1 ω7c). The respiratory quinone was Q-8. The polar lipids were composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and an unidentified aminolipid. The DNA G+C content of strain NLF-7-7 was 68.0 mol%. Based on the phenotypic, chemotaxonomic, and phylogenetic properties, strain NLF-7-7T represents a novel species of the genus Comamonas, for which the name Comamonas flocculans sp. nov. is proposed. The type strain is C. flocculans NLF-7-7T (=KCTC 62943T). The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Comamonas flocculans NLF-7-7T is MN527436. The whole-genome shotgun BioProject Number is PRJNA555370 with the Accession Number CP042344.


Assuntos
Comamonas/classificação , Gado/microbiologia , Filogenia , Águas Residuárias/microbiologia , Animais , Técnicas de Tipagem Bacteriana , Composição de Bases , Comamonas/isolamento & purificação , DNA Bacteriano/genética , Ácidos Graxos/química , Genoma Bacteriano , Fosfolipídeos/química , RNA Ribossômico 16S/genética , República da Coreia , Análise de Sequência de DNA , Ubiquinona/química
4.
Physiol Mol Biol Plants ; 23(3): 571-580, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28878496

RESUMO

This study was aimed to identify plant growth-promoting bacterial isolates from soil samples and to investigate their ability to improve plant growth and salt tolerance by analysing phytohormones production and phosphate solubilisation. Among the four tested bacterial isolates (I-2-1, H-1-4, H-2-3, and H-2-5), H-2-5 was able to enhance the growth of Chinese cabbage, radish, tomato, and mustard plants. The isolated bacterium H-2-5 was identified as Bacillus amyloliquefaciens H-2-5 based on 16S rDNA sequence and phylogenetic analysis. The secretion of gibberellins (GA4, GA8, GA9, GA19, and GA20) from B. amyloliquefaciens H-2-5 and their phosphate solubilisation ability may contribute to enhance plant growth. In addition, the H-2-5-mediated mitigation of short term salt stress was tested on soybean plants that were affected by sodium chloride. Abscisic acid (ABA) produced by the H-2-5 bacterium suppressed the NaCl-induced stress effects in soybean by enhancing plant growth and GA4 content, and by lowering the concentration of ABA, salicylic acid, jasmonic acid, and proline. These results suggest that GAs, ABA production, and the phosphate solubilisation capacity of B. amyloliquefaciens H-2-5 are important stimulators that promote plant growth through their interaction and also to improve plant growth by physiological changes in soybean at saline soil.

5.
J Basic Microbiol ; 56(1): 92-101, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26367263

RESUMO

This study analyzed the rhizobacterial distribution from two coasts, which show contrasting climates and geographical and geological characteristics, to secure specific microbial resources. Furthermore, rhizobacteria were characterized and the results were comparatively analyzed with reference to the characteristics of two coastal environments. For this purpose, three representative halophyte species communities native to the Dokdo Islands and the East Sea coast of Korea were selected. Partial identification of rhizobacteria showed a clear difference between each sampling site and halophyte. Furthermore, isolates were characterized by their growth properties under NaCl or pH gradients related with previous geographical, geological, and climatic studies of the Dokdo Islands and the East Sea coast. A high proportion of the East Sea isolates showed halotolerance, but a high proportion of Dokdo isolates shared halophilic traits. Meanwhile, a higher proportion of East Sea isolates grew at a wider range of pH values than those of the Dokdo Islands. The results of our study suggest that unique rhizobacterial resources developed under specific rhizospheric conditions derived from halophytes interacting with their specific environment, even within the same coastal halophytic species. Therefore, this study proposes the necessity of securing characterized and unique microbial resources to apply to specific environments for the purpose of recovering and restoring sand dunes or salt-damaged agricultural lands.


Assuntos
Rhizobium/classificação , Rhizobium/isolamento & purificação , Plantas Tolerantes a Sal/microbiologia , Microbiologia do Solo , Sequência de Bases , Biodiversidade , Clima , DNA Bacteriano/genética , DNA Ribossômico/genética , Fenótipo , Filogenia , Raízes de Plantas/microbiologia , RNA Ribossômico 16S/genética , República da Coreia , Rhizobium/genética , Rizosfera , Salinidade , Plantas Tolerantes a Sal/química , Plantas Tolerantes a Sal/crescimento & desenvolvimento , Análise de Sequência de DNA , Cloreto de Sódio/química , Cloreto de Sódio/metabolismo , Solo/química
6.
Mol Cancer ; 13: 222, 2014 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-25255877

RESUMO

BACKGROUND: The metastasis of hematogenous cancer cells is associated with abnormal glycosylation such as sialyl lewis antigens. Although the hepatitis B virus X protein (HBx) plays important role in liver disease, the precise function of HBx on aberrant glycosylation for metastasis remains unclear. METHODS: The human hepatocellular carcinoma tissues, HBx transgenic mice and HBx-transfected cells were used to check the correlation of expressions between HBx and Sialyl lewis antigen for cancer metastasis. To investigate whether expression levels of glycosyltransferases induced in HBx-transfected cells are specifically associated with sialyl lewis A (SLA) synthesis, which enhances metastasis by interaction of liver cancer cells with endothelial cells, ShRNA and siRNAs targeting specific glycosyltransferases were used. RESULTS: HBx expression in liver cancer region of HCC is associated with the specific synthesis of SLA. Furthermore, the SLA was specifically induced both in liver tissues from HBx-transgenic mice and in in vitro HBx-transfected cells. HBx increased transcription levels and activities of α2-3 sialyltransferases (ST3Gal III), α1-3/4 fucosyltransferases III and VII (FUT III and VII) genes, which were specific for SLA synthesis, allowing dramatic cell-cell adhesion for metastatic potential. Interestingly, HBx specifically induced expression of N-acetylglucosamine-ß1-3 galactosyltransferase V (ß1-3GalT 5) gene associated with the initial synthesis of sialyl lewis A, but not ß1-4GalT I. The ß1-3GalT 5 shRNA suppressed SLA expression by HBx, blocking the adhesion of HBx-transfected cells to the endothelial cells. Moreover, ß1-3GalT 5 silencing suppressed lung metastasis of HBx-transfected cells in in vivo lung metastasis system. CONCLUSION: HBx targets the specific glycosyltransferases for the SLA synthesis and this process regulates hematogenous cancer cell adhesion to endothelial cells for cancer metastasis.


Assuntos
Carcinoma Hepatocelular/metabolismo , Glicosiltransferases/metabolismo , Neoplasias Hepáticas/metabolismo , Fígado/metabolismo , Fígado/virologia , Oligossacarídeos/metabolismo , Transativadores/metabolismo , Adulto , Animais , Antígeno CA-19-9 , Carcinoma Hepatocelular/patologia , Carcinoma Hepatocelular/virologia , Linhagem Celular Tumoral , Feminino , Regulação Neoplásica da Expressão Gênica , Glicosilação , Vírus da Hepatite B/fisiologia , Células Endoteliais da Veia Umbilical Humana , Humanos , Antígenos CD15/metabolismo , Fígado/patologia , Neoplasias Hepáticas/patologia , Neoplasias Hepáticas/virologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , Pessoa de Meia-Idade , Metástase Neoplásica/patologia , Antígeno Sialil Lewis X , Proteínas Virais Reguladoras e Acessórias
7.
BMC Plant Biol ; 14: 13, 2014 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-24405887

RESUMO

BACKGROUND: Silicon (Si) application has been known to enhance the tolerance of plants against abiotic stresses. However, the protective mechanism of Si under heavy metals contamination is poorly understood. The aim of this study was to assess the role of Si in counteracting toxicity due to cadmium (Cd) and copper (Cu) in rice plants (Oryza sativa). RESULTS: Si significantly improved the growth and biomass of rice plants and reduced the toxic effects of Cd/Cu after different stress periods. Si treatment ameliorated root function and structure compared with non-treated rice plants, which suffered severe root damage. In the presence of Si, the Cd/Cu concentration was significantly lower in rice plants, and there was also a reduction in lipid peroxidation and fatty acid desaturation in plant tissues. The reduced uptake of metals in the roots modulated the signaling of phytohormones involved in responses to stress and host defense, such as abscisic acid, jasmonic acid, and salicylic acid. Furthermore, the low concentration of metals significantly down regulated the mRNA expression of enzymes encoding heavy metal transporters (OsHMA2 and OsHMA3) in Si-metal-treated rice plants. Genes responsible for Si transport (OsLSi1 and OsLSi2), showed a significant up-regulation of mRNA expression with Si treatment in rice plants. CONCLUSION: The present study supports the active role of Si in the regulation of stresses from heavy metal exposure through changes in root morphology.


Assuntos
Adenosina Trifosfatases/metabolismo , Metais Pesados/toxicidade , Oryza/metabolismo , Proteínas de Plantas/metabolismo , Silício/farmacologia , Ácido Abscísico/metabolismo , Adenosina Trifosfatases/genética , Cádmio/toxicidade , Cobre/toxicidade , Ciclopentanos/metabolismo , Oryza/efeitos dos fármacos , Oryza/enzimologia , Oxilipinas/metabolismo , Proteínas de Plantas/genética , Ácido Salicílico/metabolismo
8.
J Plant Res ; 127(4): 525-32, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24840865

RESUMO

We investigated the effects of silicon (Si) application on rice plants (Oryza sativa L.) and its responses in the regulation of jasmonic acid (JA) during wounding stress. Endogenous JA was significantly higher in wounded rice plants than in non-wounded. In contrast, Si treatment significantly reduced JA synthesis as compared to non-Si applications under wounding stress. mRNA expression of O. sativa genes showed down-regulation of lipoxygenase, allene oxide synthase 1, allene oxide synthase 2, 12-oxophytodienoate reductase 3, and allene oxide cyclase upon Si application and wounding stress as compared to non-Si-treated wounded rice plants. The physical injury-induced-oxidative stress was modulated by Si treatments, which resulted in higher catalase, peroxidase, and polyphenol oxidase activities as compared with non-Si-treated plants under wounding stress. The higher Si accumulation in rice plants also reduced the level of lipid peroxidation, which helped the rice plants to protect it from wounding stress. In conclusion, Si accumulation in rice plants mitigated the adverse effects of wounding through regulation of antioxidants and JA.


Assuntos
Ciclopentanos/metabolismo , Regulação da Expressão Gênica/efeitos dos fármacos , Oryza/efeitos dos fármacos , Oryza/genética , Oxilipinas/metabolismo , Proteínas de Plantas/genética , Silício/metabolismo , Silício/farmacologia , Oryza/enzimologia , Estresse Oxidativo/efeitos dos fármacos , Proteínas de Plantas/metabolismo , Reação em Cadeia da Polimerase em Tempo Real
9.
Appl Radiat Isot ; 206: 111236, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38367295

RESUMO

Recently, 225Ac has received considerable attention for its use in targeted alpha therapy because it has a relatively long half-life and yields four more alpha-particles from the daughter nuclides. The performance evaluation should separately assess the distribution of 225Ac and 213Bi because daughter nuclides, including 213Bi, can cause renal toxicity, which may hinder the widespread use of 225Ac for targeted alpha therapy. In this study, we describe and validate a spectrum decomposition method for dual-isotope imaging of 225Ac and 213Bi using an alpha imaging detector. We implemented an experiment to demonstrate the feasibility of using the alpha imaging detector to obtain distribution images using therapeutic amounts of 225Ac. In addition, we designed and conducted a Monte Carlo simulation under realistic conditions based on the experimental results to evaluate the spectrum decomposition method for dual-isotope imaging. The alpha imaging detector exhibited a detection efficiency of 18.5% and an energy resolution of 13.4% at 5.5 MeV. In the simulation, the distributions of 225Ac and 213Bi were obtained in each region with a relative error of 5%. The results of this study confirmed the feasibility of the dual-isotope imaging method for discriminating alpha-emitters using small amounts of 225Ac.

10.
J Basic Microbiol ; 53(7): 630-4, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22961506

RESUMO

Fourteen endophytic fungi with different colony morphologies were isolated from the roots of Calystegia soldanella. Endophytic fungi isolated from C. soldanella were identified by internal transcribed spacer (ITS) region. To verify plant growth promotion (PGP), culture filtrates of isolated endophytic fungi were treated in Waito-c rice (WR) and C. soldanella seedlings. Culture filtrates of Cs-8-1 fungal strain had advanced PGP activity. The presence of physiologically bioactive gibberellins (GA) GA(1) (1.213 ng ml(-1)), GA(3) (1.292 ng ml(-1)), GA(4) (3.6 ng ml(-1)), GA(7) (1.328 ng ml(-1)), other inactive GA(9) (0.796 ng ml(-1)) and GA(12) (0.417 ng ml(-1)), GA(20) (0.302 ng ml(-1)), GA(24) (1.351 ng ml(-1)), GA(34) (0.076 ng ml(-1)), and GA(53) (0.051 ng ml(-1)) in culture filtrates of Cs-8-1 fungal strain was detected. The Cs-8-1 fungal strain was confirmed as a producer of GAs. Molecular analysis of sequences showed high similarity of 99% to Cadophora malorum. Consequentially, the Cs-8-1 fungal strain was identified as a new C. malorum producing GAs.


Assuntos
Ascomicetos/isolamento & purificação , Calystegia/microbiologia , Giberelinas/isolamento & purificação , Reguladores de Crescimento de Plantas/isolamento & purificação , Ascomicetos/metabolismo , DNA Fúngico/química , DNA Fúngico/metabolismo , Oryza/crescimento & desenvolvimento , Oryza/microbiologia , Filogenia , Raízes de Plantas/microbiologia
11.
Microbiol Resour Announc ; 12(1): e0079922, 2023 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-36541808

RESUMO

Here, we report the draft genome sequence of Aquamicrobium lusatiense NLF2-7, a Gram-negative, aerobic, non-flagellum-forming, rod-shaped bacterium that was isolated from livestock wastewater in South Korea. The assembled genome sequence is 5,201,486 bp, with 4,972 protein-coding sequences in 12 contigs, and possess the genes for the sulfur oxidation pathway.

12.
Microbiol Resour Announc ; 12(1): e0099922, 2023 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-36598248

RESUMO

The complete genome sequence of Alcaligenes faecalis strain NLF5-7, which was isolated from livestock wastewater, is reported. The genome of strain NLF5-7 contains genes for assimilatory sulfate reduction, dissimilatory sulfate reduction and oxidation, and an SOX system, based on its functional genetic characteristics.

13.
Antonie Van Leeuwenhoek ; 101(2): 267-79, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21956658

RESUMO

We investigated in this study the influence of an endophytic fungus, Paecilomyces formosus LHL10, on the thermotolerance of cucumber (Cucumis sativus) upon exposure to high (38°C) and low (8°C) temperature stresses. The results showed that endophyte-inoculated plants had significantly higher plant growth attributes under high-temperature stress. However, they were either low or insignificant in non-inoculated control and inoculated plants with 8°C treatments. Lower stress-promulgated water deficit and cellular membrane damage were observed in endophyte-treated plants after 38°C treatment than in control plants under 8°C stress. Total polyphenol, reduced glutathione, and lipid peroxidation activities were reduced in endophyte-associated plants after exposure to 38°C as compared with control and 8°C-treated plants. The concentration of saturated fatty acids (palmitic-C16:0; stearic-C18:0) was lower in endophyte-treated plants with or without low-temperature stress, but after 8°C treatment increased compared with controls. Unsaturated fatty acids (oleic-C18:1; linoleic-C18:2; linolenic-C18:3 acids) were similar at normal conditions; however, at 38°C, C18:2 and C18:3 were decreased, and C18:1 was increased in endophyte-treated plants compared with controls, while the inverse relationship was found at 8°C. Low levels of abscisic acid in P. formosus-associated plants after 38°C treatments revealed stress tolerance compared with control and 8°C-treated plants. In contrast, salicylic acid was pronounced in endophyte-treated plants after low-temperature stress as compared to other treatments. The results provide evidence that the response to P. formosus association was beneficial at normal growth temperature and had varying effects in response to temperature stress.


Assuntos
Cucumis sativus/microbiologia , Cucumis sativus/fisiologia , Endófitos/fisiologia , Paecilomyces/fisiologia , Cucumis sativus/crescimento & desenvolvimento , Ácidos Graxos/metabolismo , Temperatura Alta , Ácido Salicílico/metabolismo
14.
Arch Environ Contam Toxicol ; 62(3): 411-23, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22052328

RESUMO

To assess the level of polychlorinated biphenyl (PCB) contamination and identify their sources, surface sediments were collected from selected locations along Nakdong River, Korea, and analyzed for 209 PCB congeners using high-resolution gas chromatography/high-resolution mass spectroscopy. PCB levels ranged from 0.124 to 79.2 ng/g dry weight (coplanar PCBs 0.295 to 5720 pg/g dry), which were similar to those of three other major rivers (Han, Geum, and Youngsan rivers) in Korea but slightly lower than those in neighboring countries. Regarding homologue composition, tetra-CBs were most abundant in most samples, but some samples with much higher PCBs concentrations had relatively lower proportions of tetra-CBs and higher proportions of penta- to hepta-CBs. To identify the sources of PCBs in sediment samples, principal component analysis/absolute principal component scores (PCA/APCS), positive matrix factorization (PMF), and multiple linear regression (MLR) were used with the congener composition of aroclors (1242, 1248, 1254, and 1260) and the flue gas of waste incinerators (data obtained from a previous article) as source profiles. Results showed that the three models showed similar source apportionments. Most sediment samples with lower PCB concentrations had higher proportions of incineration-derived materials, and some sediment samples with much higher PCB concentrations had higher proportions of aroclor 1260. This occurred because many industrial facilities, such as landfill leachate-treatment facilities, were gathered around sampling points with high PCB concentrations, and high-chlorinated PCBs are more stable in the elution process of landfill leachate than the incineration process. PCB concentrations estimated by APCS, PMF, and MLR were similar to the measured values with coefficients of determination ranging from 0.77 to 0.99.


Assuntos
Sedimentos Geológicos/química , Bifenilos Policlorados/análise , Rios/química , Poluentes Químicos da Água/análise , Monitoramento Ambiental , Análise Multivariada , Análise de Componente Principal , Poluição Química da Água/estatística & dados numéricos
15.
World J Microbiol Biotechnol ; 28(4): 1483-94, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22805930

RESUMO

Little is known about the role of endophytic fungi against abiotic stresses and isoflavonoids (IF) contents of soybean. In current study, we investigated the role of fungal endophytes on the growth of soybean under salt stress conditions. Pure cultures of nine endophytic fungi were isolated from the roots of field-grown soybean plants, and their culture filtrates were screened on Waito-C and Dongjin-byeo rice cultivars; for identification of plant growth promoting fungal strains. It was observed that fungal isolate GMC-2B significantly promoted the growth of both Waito-C and Dongjin-byeo. GMC-2B was later identified as a new strain of Metarhizium anisopliae LHL07 on the basis of 18S rDNA sequences and phylogenetic analysis. Metarhizium anisopliae LHL07 inoculated soybean plants recorded significantly higher shoot length, shoot fresh and dry biomass, chlorophyll contents, transpiration rate, photosynthetic rate and leaf area; under sodium chloride induced salt stress as compared to non-inoculated control plants. An elevated proline and reduced superoxide dismutase and malondialdehyde contents in M. anisopliae LHL07 inoculated soybean plants demonstrated mitigation of salt induced oxidative stress. Furthermore, reduced abscisic acid and elevated jasmonic acid contents in soybean plants confirmed that lesser stress was convened to M. anisopliae inoculated-plants under salinity stress. We also assessed the role of M. anisopliae interaction on IF biosynthesis of soybean, and found significantly higher IF contents in M. anisopliae inoculated soybean plants. In conclusion, endophytic fungal interactions with soybean can be beneficial to improve soybean quality and quantity under salt affected agricultural systems.


Assuntos
Glycine max/crescimento & desenvolvimento , Glycine max/microbiologia , Metarhizium/crescimento & desenvolvimento , Pressão Osmótica , Sais/toxicidade , Biomassa , Clorofila/análise , Análise por Conglomerados , DNA Fúngico/química , DNA Fúngico/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Endófitos/crescimento & desenvolvimento , Endófitos/metabolismo , Genes de RNAr , Malondialdeído/análise , Metarhizium/metabolismo , Dados de Sequência Molecular , Fotossíntese , Filogenia , Reguladores de Crescimento de Plantas/metabolismo , Brotos de Planta/crescimento & desenvolvimento , Transpiração Vegetal , Prolina/análise , RNA Fúngico/genética , RNA Ribossômico 18S/genética , Análise de Sequência de DNA , Glycine max/química , Glycine max/fisiologia , Superóxido Dismutase/análise
16.
Front Bioeng Biotechnol ; 10: 883522, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36507271

RESUMO

Microbes are essential in biofloc technology for controlling nitrogen levels in water. The composition and function of microorganisms with biofloc systems were reported; however, data on microorganisms other than bacteria, such as algae (which are essential in the nitrogen cycle) and zooplankton (which are bacterial and algal predators), remain limited. The microbial communities (including bacteria, algae, zooplankton, and fungi) were investigated in shrimp farms using biofloc technology. Using Illumina MiSeq sequencing, the V4 region of 18S rRNA and the V3-V4 region of 16S rRNA were utilized for the analysis of the eukaryotic and prokaryotic microbial communities. As a result, it was found that the biofloc in the shrimp farm consisted of 48.73%-73.04% eukaryotic organisms and 26.96%-51.27% prokaryotic organisms. In these shrimp farms, prokaryotic microbial communities had higher specie richness and diversity than eukaryotic microbial communities. However, the eukaryotic microbial communities were more abundant than their prokaryotic counterparts, while algae and zooplankton dominated them. It was discovered that the structures of the microbial communities in the shrimp farms seemed to depend on the effects of predation by zooplankton and other related organisms. The results provided the nitrogen cycle in biofloc systems by the algal and bacterial groups in microbial communities.

17.
Mycobiology ; 50(5): 366-373, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36404905

RESUMO

Regulation of proper gene expression is important for cellular and organismal survival, maintenance, and growth. Abnormal gene expression, even for a single critical gene, can thwart cellular integrity and normal physiology to cause diseases, aging, and death. Therefore, gene expression profiling serves as a powerful tool to understand the pathology of diseases and to cure them. In this study, the difference in gene expression in Flammulina velutipes was compared between the wild type (WT) mushroom and the mutant one with clogging phenomenon. Differentially expressed transcripts were screened to identify the candidate genes responsible for the mutant phenotype using the DNA microarray analysis. A total of 88 genes including 60 upregulated and 28 downregulated genes were validated using the real-time quantitative PCR analysis. In addition, proteomic differences between the WT and mutant mushroom were analyzed using two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF). Interestingly, the genes identified by these genomic and proteomic analyses were involved in stress response, translation, and energy/sugar metabolism, including HSP70, elongation factor 2, and pyruvate kinase. Together, our data suggest that the aberrant expression of these genes attributes to the mutant clogging phenotype. We propose that these genes can be targeted to foster normal growth in F. velutipes.

18.
Arch Environ Contam Toxicol ; 60(4): 576-89, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-20614215

RESUMO

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous pollutants worldwide; currently, they are being described as potential persistent organic pollutants (POPs). This study is aimed to identify sources of PAHs in the atmosphere around the Sihwa and Banwol industrial area by using diagnostic ratios and multivariate factor analysis such as principal component analysis/absolute principal component score (PCA/APCS) and positive matrix factorization (PMF). The atmospheric PAHs level was 8.07-177 ng/m(3) (gaseous phase: 5.93-68.4 ng/m(3); particulate phase: 1.85-128 ng/m(3)) and PAHs concentration in the warm period was lower than the cold period. As a result of the examination of relative BaP concentration, photodecomposition was found not to be an important factor in the seasonal difference of PAHs concentration in this study. Source identification was first carried out through a double ratio plot. As a result of double ratio plots, atmospheric PAHs in this study were found to stem from the combination of vehicular emission, combustion (coal or biomass-wood or grass), and petroleum. Moreover, PCA/APCS and PMF showed that the main sources were vehicular emission and coal combustion and and incineration-related source with a summed contribution of about 72.6-86.7%. Finally, the fitness of the two models was very good; the estimated values were highly correlated with the measured values (R(2) = 0.991-0.999, p < 0.05).


Assuntos
Poluentes Atmosféricos/análise , Ar/análise , Monitoramento Ambiental/métodos , Indústrias , Material Particulado/análise , Hidrocarbonetos Policíclicos Aromáticos/análise , Ar/normas , Monitoramento Ambiental/estatística & dados numéricos , Análise Multivariada , Análise de Componente Principal , República da Coreia
19.
J Hazard Mater ; 403: 123596, 2021 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-32829225

RESUMO

By capturing intracellular microcystins (MCs) release from microalgal cell destruction and extracellular MCs oxidation, this study suggests a mathematical model explaining the simultaneous removal of microalgae and their toxins (MC-LR, -RR, and -YR) in non-thermal plasma (NTP) application. Although the suggested model was built based on simplified kinetic assumptions, it can reasonably predict the behavior of extracellular MCs in a harvested/concentrated slurry of microalgae taken from a blooming site. After 24 h of NTP treatment, the experimental reduction of extracellular MCs was recorded up to ∼77 %. Regressions based on the experimental data reveal the degradation rate (8.60 d-1) and release rate (0.37 d-1) of MCs, which provides the essential physicochemical information about intracellular MCs release by microalgal cell destruction. Simulation results help to develop safe and useful control over the simultaneous treatment of harvested microalgal biomass and toxins. This study further demonstrates that the suggested model contributes to predicting the variation of MCs in mass management of microalgal biomass for sustainable utilization.


Assuntos
Microalgas , Gases em Plasma , Biomassa , Microalgas/metabolismo , Microcistinas/metabolismo , Oxirredução
20.
Phys Med ; 84: 178-185, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33901862

RESUMO

PURPOSE: Conventional x-ray spectrum estimation methods from transmission measurement often lead to inaccurate results when extensive x-ray scatter is present in the measured projection. This study aims to apply the weighted L1-norm scatter correction algorithm in spectrum estimation for reducing residual differences between the estimated and true spectrum. METHOD: The scatter correction algorithm is based on a simple radiographic scattering model where the intensity of scattered x-ray is directly estimated from a transmission measurement. Then, the scatter-corrected measurement is used for the spectrum estimation method that consists of deciding the weights of predefined spectra and representing the spectrum as a linear combination of the predefined spectra with the weights. The performances of the estimation method combined with scatter correction are evaluated on both simulated and experimental data. RESULTS: The results show that the estimated spectra using the scatter-corrected projection nearly match the true spectra. The normalized-root-mean-square-error and the mean energy difference between the estimated spectra and corresponding true spectra are reduced from 5.8% and 1.33 keV without the scatter correction to 3.2% and 0.73 keV with the scatter correction for both simulation and experimental data, respectively. CONCLUSIONS: The proposed method is more accurate for the acquisition of x-ray spectrum than the estimation method without scatter correction and the spectrum can be successfully estimated even the materials of the filters and their thicknesses are unknown. The proposed method has the potential to be used in several diagnostic x-ray imaging applications.


Assuntos
Algoritmos , Simulação por Computador , Imagens de Fantasmas , Radiografia , Espalhamento de Radiação , Raios X
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