Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Transcription and DNA Methylation Patterns of Blood-Derived CD8⁺ T Cells Are Associated With Age and Inflammatory Bowel Disease But Do Not Predict Prognosis.

Gasparetto, Marco; Payne, Felicity; Nayak, Komal; Kraiczy, Judith; Glemas, Claire; Philip-McKenzie, Yosef; Ross, Alexander; Edgar, Rachel D; Zerbino, Daniel R; Salvestrini, Camilla; Torrente, Franco; Ventham, Nicholas T; Kalla, Rahul; Satsangi, Jack; Sarkies, Peter; Heuschkel, Robert; Zilbauer, Matthias.

Gastroenterology ; 160(1): 232-244.e7, 2021 01.

Artigo em Inglês | MEDLINE | ID: mdl-32814113

2.

Regional Differences in Human Biliary Tissues and Corresponding In Vitro-Derived Organoids.

Rimland, Casey A; Tilson, Samantha G; Morell, Carola M; Tomaz, Rute A; Lu, Wei-Yu; Adams, Simone E; Georgakopoulos, Nikitas; Otaizo-Carrasquero, Francisco; Myers, Timothy G; Ferdinand, John R; Gieseck, Richard L; Sampaziotis, Fotios; Tysoe, Olivia C; Ross, Alexander; Kraiczy, Judith M; Wesley, Brandon; Muraro, Daniele; Zilbauer, Matthias; Oniscu, Gabriel C; Hannan, Nicholas R F; Forbes, Stuart J; Saeb-Parsy, Kourosh; Wynn, Thomas A; Vallier, Ludovic.

Hepatology ; 73(1): 247-267, 2021 01.

Artigo em Inglês | MEDLINE | ID: mdl-32222998

3.

Interleukin-22 promotes phagolysosomal fusion to induce protection against Salmonella enterica Typhimurium in human epithelial cells.

Forbester, Jessica L; Lees, Emily A; Goulding, David; Forrest, Sally; Yeung, Amy; Speak, Anneliese; Clare, Simon; Coomber, Eve L; Mukhopadhyay, Subhankar; Kraiczy, Judith; Schreiber, Fernanda; Lawley, Trevor D; Hancock, Robert E W; Uhlig, Holm H; Zilbauer, Matthias; Powrie, Fiona; Dougan, Gordon.

Proc Natl Acad Sci U S A ; 115(40): 10118-10123, 2018 10 02.

Artigo em Inglês | MEDLINE | ID: mdl-30217896

4.

DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development.

Kraiczy, Judith; Nayak, Komal M; Howell, Kate J; Ross, Alexander; Forbester, Jessica; Salvestrini, Camilla; Mustata, Roxana; Perkins, Sally; Andersson-Rolf, Amanda; Leenen, Esther; Liebert, Anke; Vallier, Ludovic; Rosenstiel, Philip C; Stegle, Oliver; Dougan, Gordon; Heuschkel, Robert; Koo, Bon-Kyoung; Zilbauer, Matthias.

Gut ; 68(1): 49-61, 2019 01.

Artigo em Inglês | MEDLINE | ID: mdl-29141958

5.

DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome.

Howell, Kate Joanne; Kraiczy, Judith; Nayak, Komal M; Gasparetto, Marco; Ross, Alexander; Lee, Claire; Mak, Tim N; Koo, Bon-Kyoung; Kumar, Nitin; Lawley, Trevor; Sinha, Anupam; Rosenstiel, Philip; Heuschkel, Robert; Stegle, Oliver; Zilbauer, Matthias.

Gastroenterology ; 154(3): 585-598, 2018 02.

Artigo em Inglês | MEDLINE | ID: mdl-29031501

6.

Epigenetics in Paediatric Gastroenterology, Hepatology, and Nutrition: Present Trends and Future Perspectives.

Zilbauer, Matthias; Zellos, Aglaia; Heuschkel, Robert; Gasparetto, Marco; Kraiczy, Judith; Postberg, Jan; Greco, Luigi; Auricchio, Renata; Galatola, Martina; Embleton, Nicholas; Wirth, Stefan; Jenke, Andreas.

J Pediatr Gastroenterol Nutr ; 62(4): 521-9, 2016 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-26628441

7.

Reply.

Howell, Kate; Kraiczy, Judith; Stegle, Oliver; Zilbauer, Matthias.

Gastroenterology ; 155(1): 230-231, 2018 07.

Artigo em Inglês | MEDLINE | ID: mdl-29894680

8.

Mice lacking the intestinal peptide transporter display reduced energy intake and a subtle maldigestion/malabsorption that protects them from diet-induced obesity.

Kolodziejczak, Dominika; Spanier, Britta; Pais, Ramona; Kraiczy, Judith; Stelzl, Tamara; Gedrich, Kurt; Scherling, Christian; Zietek, Tamara; Daniel, Hannelore.

Am J Physiol Gastrointest Liver Physiol ; 304(10): G897-907, 2013 May 15.

Artigo em Inglês | MEDLINE | ID: mdl-23494121

9.

Smooth muscle contributes to the development and function of a layered intestinal stem cell niche.

McCarthy, Neil; Tie, Guodong; Madha, Shariq; He, Ruiyang; Kraiczy, Judith; Maglieri, Adrianna; Shivdasani, Ramesh A.

Dev Cell ; 58(7): 550-564.e6, 2023 04 10.

Artigo em Inglês | MEDLINE | ID: mdl-36924771

10.

Graded BMP signaling within intestinal crypt architecture directs self-organization of the Wnt-secreting stem cell niche.

Kraiczy, Judith; McCarthy, Neil; Malagola, Ermanno; Tie, Guodong; Madha, Shariq; Boffelli, Dario; Wagner, Daniel E; Wang, Timothy C; Shivdasani, Ramesh A.

Cell Stem Cell ; 30(4): 433-449.e8, 2023 04 06.

Artigo em Inglês | MEDLINE | ID: mdl-37028407

11.

Culture-Associated DNA Methylation Changes Impact on Cellular Function of Human Intestinal Organoids.

Edgar, Rachel D; Perrone, Francesca; Foster, April R; Payne, Felicity; Lewis, Sophia; Nayak, Komal M; Kraiczy, Judith; Cenier, Aurélie; Torrente, Franco; Salvestrini, Camilla; Heuschkel, Robert; Hensel, Kai O; Harris, Rebecca; Jones, D Leanne; Zerbino, Daniel R; Zilbauer, Matthias.

Cell Mol Gastroenterol Hepatol ; 14(6): 1295-1310, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-36038072

12.

SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling.

Gu, Wei; Wang, Hua; Huang, Xiaofeng; Kraiczy, Judith; Singh, Pratik N P; Ng, Charles; Dagdeviren, Sezin; Houghton, Sean; Pellon-Cardenas, Oscar; Lan, Ying; Nie, Yaohui; Zhang, Jiaoyue; Banerjee, Kushal K; Onufer, Emily J; Warner, Brad W; Spence, Jason; Scherl, Ellen; Rafii, Shahin; Lee, Richard T; Verzi, Michael P; Redmond, David; Longman, Randy; Helin, Kristian; Shivdasani, Ramesh A; Zhou, Qiao.

Cell Stem Cell ; 29(1): 101-115.e10, 2022 01 06.

Artigo em Inglês | MEDLINE | ID: mdl-34582804

13.

Single-cell atlas of human liver development reveals pathways directing hepatic cell fates.

Wesley, Brandon T; Ross, Alexander D B; Muraro, Daniele; Miao, Zhichao; Saxton, Sarah; Tomaz, Rute A; Morell, Carola M; Ridley, Katherine; Zacharis, Ekaterini D; Petrus-Reurer, Sandra; Kraiczy, Judith; Mahbubani, Krishnaa T; Brown, Stephanie; Garcia-Bernardo, Jose; Alsinet, Clara; Gaffney, Daniel; Horsfall, Dave; Tysoe, Olivia C; Botting, Rachel A; Stephenson, Emily; Popescu, Dorin-Mirel; MacParland, Sonya; Bader, Gary; McGilvray, Ian D; Ortmann, Daniel; Sampaziotis, Fotios; Saeb-Parsy, Kourosh; Haniffa, Muzlifah; Stevens, Kelly R; Zilbauer, Matthias; Teichmann, Sarah A; Vallier, Ludovic.

Nat Cell Biol ; 24(10): 1487-1498, 2022 10.

Artigo em Inglês | MEDLINE | ID: mdl-36109670

14.

Cellular and molecular architecture of the intestinal stem cell niche.

McCarthy, Neil; Kraiczy, Judith; Shivdasani, Ramesh A.

Nat Cell Biol ; 22(9): 1033-1041, 2020 09.

Artigo em Inglês | MEDLINE | ID: mdl-32884148

15.

Intestinal Epithelial Organoids as Tools to Study Epigenetics in Gut Health and Disease.

Kraiczy, Judith; Zilbauer, Matthias.

Stem Cells Int ; 2019: 7242415, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-30809264

16.

Epigenetics in Gastrointestinal Health and Disease: Spotlight on DNA Methylation in the Intestinal Epithelium.

Zilbauer, Matthias; Kraiczy, Judith.

Nestle Nutr Inst Workshop Ser ; 88: 35-44, 2017.

Artigo em Inglês | MEDLINE | ID: mdl-28346922

17.

Matrix-Assisted Transplantation of Functional Beige Adipose Tissue.

Tharp, Kevin M; Jha, Amit K; Kraiczy, Judith; Yesian, Alexandra; Karateev, Grigory; Sinisi, Riccardo; Dubikovskaya, Elena A; Healy, Kevin E; Stahl, Andreas.

Diabetes ; 64(11): 3713-24, 2015 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-26293504

18.

Genome-Wide Epigenetic and Transcriptomic Characterization of Human-Induced Pluripotent Stem Cell-Derived Intestinal Epithelial Organoids.

Kraiczy, Judith; Ross, Alexander D B; Forbester, Jessica L; Dougan, Gordon; Vallier, Ludovic; Zilbauer, Matthias.

Cell Mol Gastroenterol Hepatol ; 7(2): 285-288, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-30704978

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