Visualization for epidemiological modelling: challenges, solutions, reflections and recommendations.

We report on an ongoing collaboration between epidemiological modellers and visualization researchers by documenting and reflecting upon knowledge constructs-a series of ideas, approaches and methods taken from existing visualization research and practice-deployed and developed to support modelling of the COVID-19 pandemic. Structured independent commentary on these efforts is synthesized through iterative reflection to develop: evidence of the effectiveness and value of visualization in this context; open problems upon which the research communities may focus; guidance for future activity of this type and recommendations to safeguard the achievements and promote, advance, secure and prepare for future collaborations of this kind. In describing and comparing a series of related projects that were undertaken in unprecedented conditions, our hope is that this unique report, and its rich interactive supplementary materials, will guide the scientific community in embracing visualization in its observation, analysis and modelling of data as well as in disseminating findings. Equally we hope to encourage the visualization community to engage with impactful science in addressing its emerging data challenges. If we are successful, this showcase of activity may stimulate mutually beneficial engagement between communities with complementary expertise to address problems of significance in epidemiology and beyond. See https://ramp-vis.github.io/RAMPVIS-PhilTransA-Supplement/. This article is part of the theme issue 'Technical challenges of modelling real-life epidemics and examples of overcoming these'.

Challenges and Opportunities in Data Visualization Education: A Call to Action.

This paper is a call to action for research and discussion on data visualization education. As visualization evolves and spreads through our professional and personal lives, we need to understand how to support and empower a broad and diverse community of learners in visualization. Data Visualization is a diverse and dynamic discipline that combines knowledge from different fields, is tailored to suit diverse audiences and contexts, and frequently incorporates tacit knowledge. This complex nature leads to a series of interrelated challenges for data visualization education. Driven by a lack of consolidated knowledge, overview, and orientation for visualization education, the 21 authors of this paper-educators and researchers in data visualization-identify and describe 19 challenges informed by our collective practical experience. We organize these challenges around seven themes People, Goals & Assessment, Environment, Motivation, Methods, Materials, and Change. Across these themes, we formulate 43 research questions to address these challenges. As part of our call to action, we then conclude with 5 cross-cutting opportunities and respective action items: embrace DIVERSITY+INCLUSION, build COMMUNITIES, conduct RESEARCH, act AGILE, and relish RESPONSIBILITY. We aim to inspire researchers, educators and learners to drive visualization education forward and discuss why, how, who and where we educate, as we learn to use visualization to address challenges across many scales and many domains in a rapidly changing world: viseducationchallenges.github.io.

TransVis: Integrated Distant and Close Reading of Othello Translations.

Studying variation among time-evolved translations is a valuable research area for cultural heritage. Understanding how and why translations vary reveals cultural, ideological, and even political influences on literature as well as author relations. In this article, we introduce a novel integrated visual application to support distant and close reading of a collection of Othello translations. We present a new interactive application that provides an alignment overview of all the translations and their correspondences in parallel with smooth zooming and panning capability to integrate distant and close reading within the same view. We provide a range of filtering and selection options to customize the alignment overview as well as focus on specific subsets. Selection and filtering are responsive to expert user preferences and update the analytical text metrics interactively. Also, we introduce a customized view for close reading which preserves the history of selections and the alignment overview state and enables backtracing and re-examining them. Finally, we present a new Term-Level Comparisons view (TLC) to compare and convey relative term weighting in the context of an alignment. Our visual design is guided by, used and evaluated by a domain expert specialist in German translations of Shakespeare.

VisLitE: Visualization Literacy and Evaluation.

With the widespread advent of visualization techniques to convey complex data, visualization literacy (VL) is growing in importance. Two noteworthy facets of literacy are user understanding and the discovery of visual patterns with the help of graphical representations. The research literature on VL provides useful guidance and opportunities for further studies in this field. This introduction summarizes and presents research on VL that examines how well users understand basic and advanced data representations. To the best of our knowledge, this is the first tutorial article on interactive VL. We describe evaluation categories of existing relevant research into unique subject groups that facilitate and inform comparisons of literacy literature and provide a starting point for interested readers. In addition, the introduction also provides an overview of the various evaluation techniques used in this field of research and their challenging nature. Our introduction provides researchers with unexplored directions that may lead to future work. This starting point serves as a valuable resource for beginners interested in the topic of VL.

Integral Curve Clustering and Simplification for Flow Visualization: A Comparative Evaluation.

Unsupervised clustering techniques have been widely applied to flow simulation data to alleviate clutter and occlusion in the resulting visualization. However, there is an absence of systematic guidelines for users to evaluate (both quantitatively and visually) the appropriate clustering technique and similarity measures for streamline and pathline curves. In this work, we provide an overview of a number of prevailing curve clustering techniques. We then perform a comprehensive experimental study to qualitatively and quantitatively compare these clustering techniques coupled with popular similarity measures used in the flow visualization literature. Based on our experimental results, we derive empirical guidelines for selecting the appropriate clustering technique and similarity measure given the requirements of the visualization task. We believe our work will inform the task of generating meaningful reduced representations for large-scale flow data and inspire the continuous investigation of a more refined guidance on clustering technique selection.

AgentVis: Visual Analysis of Agent Behavior With Hierarchical Glyphs.

Glyphs representing complex behavior provide a useful and common means of visualizing multivariate data. However, due to their complex shape, overlapping, and occlusion of glyphs is a common and prominent limitation. This limits the number of discreet data tuples that can be displayed in a given image. Using a real-world application, glyphs are used to depict agent behavior in a call center. However, many call centers feature thousands of agents. A standard approach representing thousands of agents with glyphs does not scale. To accommodate the visualization incorporating thousands of glyphs we develop clustering of overlapping glyphs into a single parent glyph. This hierarchical glyph represents the mean value of all child agent glyphs, removing overlap and reduTcing visual clutter. Multi-variate clustering techniques are explored and developed in collaboration with domain experts in the call center industry. We implement dynamic control of glyph clusters according to zoom level and customized distance metrics, to utilize image space with reduced overplotting and cluttering. We demonstrate our technique with examples and a usage scenario using real-world call-center data to visualize thousands of call center agents, revealing insight into their behavior and reporting feedback from expert call-center analysts.

VIS30K: A Collection of Figures and Tables From IEEE Visualization Conference Publications.

We present the VIS30K dataset, a collection of 29,689 images that represents 30 years of figures and tables from each track of the IEEE Visualization conference series (Vis, SciVis, InfoVis, VAST). VIS30K's comprehensive coverage of the scientific literature in visualization not only reflects the progress of the field but also enables researchers to study the evolution of the state-of-the-art and to find relevant work based on graphical content. We describe the dataset and our semi-automatic collection process, which couples convolutional neural networks (CNN) with curation. Extracting figures and tables semi-automatically allows us to verify that no images are overlooked or extracted erroneously. To improve quality further, we engaged in a peer-search process for high-quality figures from early IEEE Visualization papers. With the resulting data, we also contribute VISImageNavigator (VIN, visimagenavigator.github.io), a web-based tool that facilitates searching and exploring VIS30K by author names, paper keywords, title and abstract, and years.

Multi-Scale Topological Analysis of Asymmetric Tensor Fields on Surfaces.

Asymmetric tensor fields have found applications in many science and engineering domains, such as fluid dynamics. Recent advances in the visualization and analysis of 2D asymmetric tensor fields focus on pointwise analysis of the tensor field and effective visualization metaphors such as colors, glyphs, and hyperstreamlines. In this paper, we provide a novel multi-scale topological analysis framework for asymmetric tensor fields on surfaces. Our multi-scale framework is based on the notions of eigenvalue and eigenvector graphs. At the core of our framework are the identification of atomic operations that modify the graphs and the scale definition that guides the order in which the graphs are simplified to enable clarity and focus for the visualization of topological analysis on data of different sizes. We also provide efficient algorithms to realize these operations. Furthermore, we provide physical interpretation of these graphs. To demonstrate the utility of our system, we apply our multi-scale analysis to data in computational fluid dynamics.

Asymmetric tensor analysis for flow visualization.

The gradient of a velocity vector field is an asymmetric tensor field which can provide critical insight that is difficult to infer from traditional trajectory-based vector field visualization techniques. We describe the structures in the eigenvalue and eigenvector fields of the gradient tensor and how these structures can be used to infer the behaviors of the velocity field. To illustrate the structures in asymmetric tensor fields, we introduce the notions of eigenvalue and eigenvector manifolds. These concepts afford a number of theoretical results that clarify the connections between symmetric and antisymmetric components in tensor fields. In addition, these manifolds naturally lead to partitions of tensor fields, which we use to design effective visualization strategies. Both eigenvalue manifold and eigenvector manifold are supported by a tensor reparameterization with physical meaning. This allows us to relate our tensor analysis to physical quantities such as rotation, angular deformation, and dilation, which provide physical interpretation of our tensor-driven vector field analysis in the context of fluid mechanics. To demonstrate the utility of our approach, we have applied our visualization techniques and interpretation to the study of the Sullivan Vortex as well as computational fluid dynamics simulation data.

Smooth graphs for visual exploration of higher-order state transitions.

In this paper, we present a new visual way of exploring state sequences in large observational time-series. A key advantage of our method is that it can directly visualize higher-order state transitions. A standard first order state transition is a sequence of two states that are linked by a transition. A higher-order state transition is a sequence of three or more states where the sequence of participating states are linked together by consecutive first order state transitions. Our method extends the current state-graph exploration methods by employing a two dimensional graph, in which higher-order state transitions are visualized as curved lines. All transitions are bundled into thick splines, so that the thickness of an edge represents the frequency of instances. The bundling between two states takes into account the state transitions before and after the transition. This is done in such a way that it forms a continuous representation in which any subsequence of the time series is represented by a continuous smooth line. The edge bundles in these graphs can be explored interactively through our incremental selection algorithm.We demonstrate our method with an application in exploring labeled time-series data from a biological survey, where a clustering has assigned a single label to the data at each time-point. In these sequences, a large number of cyclic patterns occur, which in turn are linked to specific activities. We demonstrate how our method helps to find these cycles, and how the interactive selection process helps to find and investigate activities.

Smart Brushing for Parallel Coordinates.

The Parallel Coordinates plot is a popular tool for the visualization of high-dimensional data. One of the main challenges when using parallel coordinates is occlusion and overplotting resulting from large data sets. Brushing is a popular approach to address these challenges. Since its conception, limited improvements have been made to brushing both in the form of visual design and functional interaction. We present a set of novel, smart brushing techniques that enhance the standard interactive brushing of a parallel coordinates plot. We introduce two new interaction concepts: Higher-order, sketch-based brushing, and smart, data-driven brushing. Higher-order brushes support interactive, flexible, n-dimensional pattern searches involving an arbitrary number of dimensions. Smart, data-driven brushing provides interactive, real-time guidance to the user during the brushing process based on derived meta-data. In addition, we implement a selection of novel enhancements and user options that complement the two techniques as well as enhance the exploration and analytical ability of the user. We demonstrate the utility and evaluate the results using a case study with a large, high-dimensional, real-world telecommunication data set and we report domain expert feedback from the data suppliers.

Teaching Data Visualization as a Skill.

This paper explores the meaning of the term "skill" in the context of information (data) visualization and its place in the labor market. It examines the visualization skills and software competencies that are in high demand in industry today, and the ramifications for teaching Data Visualization for professional students in higher education.

A Provenance Task Abstraction Framework.

Visual analytics tools integrate provenance recording to externalize analytic processes or user insights. Provenance can be captured on varying levels of detail, and in turn activities can be characterized from different granularities. However, current approaches do not support inferring activities that can only be characterized across multiple levels of provenance. We propose a task abstraction framework that consists of a three stage approach, composed of 1) initializing a provenance task hierarchy, 2) parsing the provenance hierarchy by using an abstraction mapping mechanism, and 3) leveraging the task hierarchy in an analytical tool. Furthermore, we identify implications to accommodate iterative refinement, context, variability, and uncertainty during all stages of the framework. We describe a use case which exemplifies our abstraction framework, demonstrating how context can influence the provenance hierarchy to support analysis. The article concludes with an agenda, raising and discussing challenges that need to be considered for successfully implementing such a framework.

Molecular Graphics: Bridging Structural Biologists and Computer Scientists.

Visualization of molecular structures is one of the most common tasks carried out by structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In this Perspective article, we outline how past developments in computer graphics and data visualization have expanded the understanding of biomolecular function, and we summarize recent advances that promise to further transform structural biology. We also highlight how progress in molecular graphics has been impeded by communication barriers between two communities: the computer scientists driving these advances, and the structural and computational biologists who stand to benefit. By pointing to canonical papers and explaining technical progress underlying new graphical developments in simple terms, we aim to improve communication between these communities; this, in turn, would help shape future developments in molecular graphics.

Efficient morse decompositions of vector fields.

Existing topology-based vector field analysis techniques rely on the ability to extract the individual trajectories such as fixed points, periodic orbits, and separatrices that are sensitive to noise and errors introduced by simulation and interpolation. This can make such vector field analysis unsuitable for rigorous interpretations. We advocate the use of Morse decompositions, which are robust with respect to perturbations, to encode the topological structures of a vector field in the form of a directed graph, called a Morse connection graph (MCG). While an MCG exists for every vector field, it need not be unique. Previous techniques for computing MCG's, while fast, are overly conservative and usually results in MCG's that are too coarse to be useful for the applications. To address this issue, we present a new technique for performing Morse decomposition based on the concept of tau-maps, which typically provides finer MCG's than existing techniques. Furthermore, the choice of tau provides a natural tradeoff between the fineness of the MCG's and the computational costs. We provide efficient implementations of Morse decomposition based on tau-maps, which include the use of forward and backward mapping techniques and an adaptive approach in constructing better approximations of the images of the triangles in the meshes used for simulation.. Furthermore, we propose the use of spatial tau-maps in addition to the original temporal tau-maps. These techniques provide additional trade-offs between the quality of the MCGs and the speed of computation. We demonstrate the utility of our technique with various examples in the plane and on surfaces including engine simulation data sets.

Visual Analysis of Spatio-temporal Relations of Pairwise Attributes in Unsteady Flow.

Despite significant advances in the analysis and visualization of unsteady flow, the interpretation of it's behavior still remains a challenge. In this work, we focus on the linear correlation and non-linear dependency of different physical attributes of unsteady flows to aid their study from a new perspective. Specifically, we extend the existing spatial correlation quantification, i.e. the Local Correlation Coefficient (LCC), to the spatio-temporal domain to study the correlation of attribute-pairs from both the Eulerian and Lagrangian views. To study the dependency among attributes, which need not be linear, we extend and compute the mutual information (MI) among attributes over time. To help visualize and interpret the derived correlation and dependency among attributes associated with a particle, we encode the correlation and dependency values on individual pathlines. Finally, to utilize the correlation and MI computation results to identify regions with interesting flow behavior, we propose a segmentation strategy of the flow domain based on the ranking of the strength of the attributes relations. We have applied our correlation and dependency metrics to a number of 2D and 3D unsteady flows with varying spatio-temporal kernel sizes to demonstrate and assess their effectiveness.

Vector field editing and periodic orbit extraction using Morse decomposition.

Design and control of vector fields is critical for many visualization and graphics tasks such as vector field visualization, fluid simulation, and texture synthesis. The fundamental qualitative structures associated with vector fields are fixed points, periodic orbits, and separatrices. In this paper, we provide a new technique that allows for the systematic creation and cancellation of fixed points and periodic orbits. This technique enables vector field design and editing on the plane and surfaces with desired qualitative properties. The technique is based on Conley theory, which provides a unified framework that supports the cancellation of fixed points and periodic orbits. We also introduce a novel periodic orbit extraction and visualization algorithm that detects, for the first time, periodic orbits on surfaces. Furthermore, we describe the application of our periodic orbit detection and vector field simplification algorithms to engine simulation data demonstrating the utility of the approach. We apply our design system to vector field visualization by creating data sets containing periodic orbits. This helps us understand the effectiveness of existing visualization techniques. Finally, we propose a new streamline-based technique that allows vector field topology to be easily identified.

Feature Surfaces in Symmetric Tensor Fields Based on Eigenvalue Manifold.

Three-dimensional symmetric tensor fields have a wide range of applications in solid and fluid mechanics. Recent advances in the (topological) analysis of 3D symmetric tensor fields focus on degenerate tensors which form curves. In this paper, we introduce a number of feature surfaces, such as neutral surfaces and traceless surfaces, into tensor field analysis, based on the notion of eigenvalue manifold. Neutral surfaces are the boundary between linear tensors and planar tensors, and the traceless surfaces are the boundary between tensors of positive traces and those of negative traces. Degenerate curves, neutral surfaces, and traceless surfaces together form a partition of the eigenvalue manifold, which provides a more complete tensor field analysis than degenerate curves alone. We also extract and visualize the isosurfaces of tensor modes, tensor isotropy, and tensor magnitude, which we have found useful for domain applications in fluid and solid mechanics. Extracting neutral and traceless surfaces using the Marching Tetrahedra method can cause the loss of geometric and topological details, which can lead to false physical interpretation. To robustly extract neutral surfaces and traceless surfaces, we develop a polynomial description of them which enables us to borrow techniques from algebraic surface extraction, a topic well-researched by the computer-aided design (CAD) community as well as the algebraic geometry community. In addition, we adapt the surface extraction technique, called A-patches, to improve the speed of finding degenerate curves. Finally, we apply our analysis to data from solid and fluid mechanics as well as scalar field analysis.

Knowledge-Assisted Ranking: A Visual Analytic Application for Sports Event Data.

Organizing sports video data for performance analysis can be challenging, especially in cases involving multiple attributes and when the criteria for sorting frequently changes depending on the user's task. The proposed visual analytic system enables users to specify a sort requirement in a flexible manner without depending on specific knowledge about individual sort keys. The authors use regression techniques to train different analytical models for different types of sorting requirements and use visualization to facilitate knowledge discovery at different stages of the process. They demonstrate the system with a rugby case study to find key instances for analyzing team and player performance. Organizing sports video data for performance analysis can be challenging in cases with multiple attributes, and when sorting frequently changes depending on the user's task. As this video shows, the proposed visual analytic system allows interactive data sorting and exploration. https://youtu.be/Cs6SLtPVDQQ.