Detalhe da pesquisa
1.
Inferring Viral Transmission Time from Phylogenies for Known Transmission Pairs.
Mol Biol Evol
; 41(1)2024 Jan 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-38149995
2.
The number and pattern of viral genomic reassortments are not necessarily identifiable from segment trees.
Mol Biol Evol
; 2024 Apr 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38648521
3.
Identification of two novel subtypes of hepatitis C virus genotype 8 and a potential new genotype successfully treated with direct acting antivirals.
J Infect Dis
; 2024 May 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-38717937
4.
Eddy Current Position Measurement in Harsh Environments: A Temperature Compensation and Calibration Approach.
Sensors (Basel)
; 24(5)2024 Feb 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-38475018
5.
A deep learning approach to real-time HIV outbreak detection using genetic data.
PLoS Comput Biol
; 18(10): e1010598, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-36240224
6.
Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification.
PLoS Comput Biol
; 18(8): e1009741, 2022 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-36026480
7.
Where Did SARS-CoV-2 Come From?
Mol Biol Evol
; 37(9): 2463-2464, 2020 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32893295
8.
Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention.
PLoS Comput Biol
; 16(9): e1008122, 2020 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32881984
9.
Addressing Ethical Challenges in US-Based HIV Phylogenetic Research.
J Infect Dis
; 222(12): 1997-2006, 2020 11 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-32525980
10.
The Puzzle of HIV Neutral and Selective Evolution.
Mol Biol Evol
; 35(6): 1355-1358, 2018 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29718409
11.
Phylogenetically resolving epidemiologic linkage.
Proc Natl Acad Sci U S A
; 113(10): 2690-5, 2016 Mar 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-26903617
12.
Phylodynamic Inference across Epidemic Scales.
Mol Biol Evol
; 34(5): 1276-1288, 2017 05 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28204593
13.
Impact of the HIV-1 genetic background and HIV-1 population size on the evolution of raltegravir resistance.
Retrovirology
; 15(1): 1, 2018 01 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29304821
14.
Inference of Transmission Network Structure from HIV Phylogenetic Trees.
PLoS Comput Biol
; 13(1): e1005316, 2017 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28085876
15.
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Proc Natl Acad Sci U S A
; 117(23): 12522-12523, 2020 06 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32381734
16.
PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes.
Bioinformatics
; 31(9): 1472-4, 2015 May 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25524896
17.
Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.
PLoS Comput Biol
; 11(12): e1004625, 2015 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-26693708
18.
Timing and order of transmission events is not directly reflected in a pathogen phylogeny.
Mol Biol Evol
; 31(9): 2472-82, 2014 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-24874208
19.
Recombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission.
Retrovirology
; 12: 96, 2015 Nov 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-26573574
20.
Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages.
Retrovirology
; 11: 81, 2014 Oct 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-25318357