Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Microbiome engineering: Taming the untractable.

Marsh, James W; Ley, Ruth E.

Cell ; 185(3): 416-418, 2022 02 03.

Artigo em Inglês | MEDLINE | ID: mdl-35081334

2.

Conducting a microbiome study.

Goodrich, Julia K; Di Rienzi, Sara C; Poole, Angela C; Koren, Omry; Walters, William A; Caporaso, J Gregory; Knight, Rob; Ley, Ruth E.

Cell ; 158(2): 250-262, 2014 Jul 17.

Artigo em Inglês | MEDLINE | ID: mdl-25036628

3.

Human genetics shape the gut microbiome.

Goodrich, Julia K; Waters, Jillian L; Poole, Angela C; Sutter, Jessica L; Koren, Omry; Blekhman, Ran; Beaumont, Michelle; Van Treuren, William; Knight, Rob; Bell, Jordana T; Spector, Timothy D; Clark, Andrew G; Ley, Ruth E.

Cell ; 159(4): 789-99, 2014 Nov 06.

Artigo em Inglês | MEDLINE | ID: mdl-25417156

4.

Advancing the microbiome research community.

Huttenhower, Curtis; Knight, Rob; Brown, C Titus; Caporaso, J Gregory; Clemente, Jose C; Gevers, Dirk; Franzosa, Eric A; Kelley, Scott T; Knights, Dan; Ley, Ruth E; Mahurkar, Anup; Ravel, Jacques; White, Owen.

Cell ; 159(2): 227-30, 2014 Oct 09.

Artigo em Inglês | MEDLINE | ID: mdl-25303518

5.

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies.

Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; Lebeer, Sarah; Macpherson, Andrew J; Massey, Ruth C; McHardy, Alice Carolyn; Koren, Omry; Lawley, Trevor D; Ley, Ruth E; O'Mahony, Liam; O'Toole, Paul W; Pamer, Eric G; Parkhill, Julian; Raes, Jeroen; Rattei, Thomas; Salonen, Anne; Segal, Eran; Segata, Nicola; Shanahan, Fergus; Sloboda, Deborah M; Smith, Gordon C S; Sokol, Harry; Spector, Tim D; Surette, Michael G; Tannock, Gerald W; Walker, Alan W; Yassour, Moran; Walter, Jens.

Nature ; 613(7945): 639-649, 2023 01.

Artigo em Inglês | MEDLINE | ID: mdl-36697862

6.

Toward Microbiome Engineering: Expanding the Repertoire of Genetically Tractable Members of the Human Gut Microbiome.

Marsh, James W; Kirk, Christian; Ley, Ruth E.

Annu Rev Microbiol ; 77: 427-449, 2023 09 15.

Artigo em Inglês | MEDLINE | ID: mdl-37339736

7.

Host remodeling of the gut microbiome and metabolic changes during pregnancy.

Koren, Omry; Goodrich, Julia K; Cullender, Tyler C; Spor, Aymé; Laitinen, Kirsi; Bäckhed, Helene Kling; Gonzalez, Antonio; Werner, Jeffrey J; Angenent, Largus T; Knight, Rob; Bäckhed, Fredrik; Isolauri, Erika; Salminen, Seppo; Ley, Ruth E.

Cell ; 150(3): 470-80, 2012 Aug 03.

Artigo em Inglês | MEDLINE | ID: mdl-22863002

8.

The Relationship Between the Human Genome and Microbiome Comes into View.

Goodrich, Julia K; Davenport, Emily R; Clark, Andrew G; Ley, Ruth E.

Annu Rev Genet ; 51: 413-433, 2017 11 27.

Artigo em Inglês | MEDLINE | ID: mdl-28934590

9.

ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning.

Mineeva, Olga; Danciu, Daniel; Schölkopf, Bernhard; Ley, Ruth E; Rätsch, Gunnar; Youngblut, Nicholas D.

PLoS Comput Biol ; 19(5): e1011001, 2023 05.

Artigo em Inglês | MEDLINE | ID: mdl-37126495

10.

A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA.

Walters, William A; Ley, Catherine; Hastie, Trevor; Ley, Ruth E; Parsonnet, Julie.

BMC Med Res Methodol ; 24(1): 27, 2024 Feb 01.

Artigo em Inglês | MEDLINE | ID: mdl-38302887

11.

Gestational diabetes is driven by microbiota-induced inflammation months before diagnosis.

Pinto, Yishay; Frishman, Sigal; Turjeman, Sondra; Eshel, Adi; Nuriel-Ohayon, Meital; Shrossel, Oshrit; Ziv, Oren; Walters, William; Parsonnet, Julie; Ley, Catherine; Johnson, Elizabeth L; Kumar, Krithika; Schweitzer, Ron; Khatib, Soliman; Magzal, Faiga; Muller, Efrat; Tamir, Snait; Tenenbaum-Gavish, Kinneret; Rautava, Samuli; Salminen, Seppo; Isolauri, Erika; Yariv, Or; Peled, Yoav; Poran, Eran; Pardo, Joseph; Chen, Rony; Hod, Moshe; Borenstein, Elhanan; Ley, Ruth E; Schwartz, Betty; Louzoun, Yoram; Hadar, Eran; Koren, Omry.

Gut ; 72(5): 918-928, 2023 05.

Artigo em Inglês | MEDLINE | ID: mdl-36627187

12.

Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome.

Chassaing, Benoit; Compher, Charlene; Bonhomme, Brittaney; Liu, Qing; Tian, Yuan; Walters, William; Nessel, Lisa; Delaroque, Clara; Hao, Fuhua; Gershuni, Victoria; Chau, Lillian; Ni, Josephine; Bewtra, Meenakshi; Albenberg, Lindsey; Bretin, Alexis; McKeever, Liam; Ley, Ruth E; Patterson, Andrew D; Wu, Gary D; Gewirtz, Andrew T; Lewis, James D.

Gastroenterology ; 162(3): 743-756, 2022 03.

Artigo em Inglês | MEDLINE | ID: mdl-34774538

13.

Interpreting tree ensemble machine learning models with endoR.

Ruaud, Albane; Pfister, Niklas; Ley, Ruth E; Youngblut, Nicholas D.

PLoS Comput Biol ; 18(12): e1010714, 2022 12.

Artigo em Inglês | MEDLINE | ID: mdl-36516158

14.

Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes.

Youngblut, Nicholas D; de la Cuesta-Zuluaga, Jacobo; Ley, Ruth E.

Environ Microbiol ; 24(9): 3966-3984, 2022 09.

Artigo em Inglês | MEDLINE | ID: mdl-35049120

15.

Struo: a pipeline for building custom databases for common metagenome profilers.

de la Cuesta-Zuluaga, Jacobo; Ley, Ruth E; Youngblut, Nicholas D.

Bioinformatics ; 36(7): 2314-2315, 2020 04 01.

Artigo em Inglês | MEDLINE | ID: mdl-31778148

16.

DeepMAsED: evaluating the quality of metagenomic assemblies.

Mineeva, Olga; Rojas-Carulla, Mateo; Ley, Ruth E; Schölkopf, Bernhard; Youngblut, Nicholas D.

Bioinformatics ; 36(10): 3011-3017, 2020 05 01.

Artigo em Inglês | MEDLINE | ID: mdl-32096824

17.

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis.

Liu, Xiaoying; Sutter, Jessica L; de la Cuesta-Zuluaga, Jacobo; Waters, Jillian L; Youngblut, Nicholas D; Ley, Ruth E.

Int J Syst Evol Microbiol ; 71(4)2021 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-33881979

18.

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome.

Chassaing, Benoit; Koren, Omry; Goodrich, Julia K; Poole, Angela C; Srinivasan, Shanthi; Ley, Ruth E; Gewirtz, Andrew T.

Nature ; 519(7541): 92-6, 2015 03 05.

Artigo em Inglês | MEDLINE | ID: mdl-25731162

19.

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

Walters, William A; Jin, Zhao; Youngblut, Nicholas; Wallace, Jason G; Sutter, Jessica; Zhang, Wei; González-Peña, Antonio; Peiffer, Jason; Koren, Omry; Shi, Qiaojuan; Knight, Rob; Glavina Del Rio, Tijana; Tringe, Susannah G; Buckler, Edward S; Dangl, Jeffery L; Ley, Ruth E.

Proc Natl Acad Sci U S A ; 115(28): 7368-7373, 2018 07 10.

Artigo em Inglês | MEDLINE | ID: mdl-29941552

20.

Microbes set the (woodrat) menu: Host genetics control diet-specific gut microbes.

Suzuki, Taichi A; Ley, Ruth E.

Proc Natl Acad Sci U S A ; 119(2)2022 01 11.

Artigo em Inglês | MEDLINE | ID: mdl-34969676

BVS Doenças Infecciosas e Parasitárias

Informação e Conhecimento para a Saúde

Configurar filtros

Sua seleção (0)

Formato de exportação:

Exportar: