Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

The Memory Problem for Neutral Mutational Models of Evolution.

Liberles, David A.

J Mol Evol ; 91(1): 2-5, 2023 02.

Artigo em Inglês | MEDLINE | ID: mdl-36562800

2.

A Genomic Conceptualization of Species.

Liberles, David A.

J Mol Evol ; 91(4): 379-381, 2023 08.

Artigo em Inglês | MEDLINE | ID: mdl-37079045

3.

WGDTree: a phylogenetic software tool to examine conditional probabilities of retention following whole genome duplication events.

Henry, C Nicholas; Piper, Kathryn; Wilson, Amanda E; Miraszek, John L; Probst, Claire S; Rong, Yuying; Liberles, David A.

BMC Bioinformatics ; 23(1): 505, 2022 Nov 24.

Artigo em Inglês | MEDLINE | ID: mdl-36434497

4.

Nucleobases in Meteorites to Nucleobases in RNA and DNA?

Krishnamurthy, Ramanarayanan; Goldman, Aaron D; Liberles, David A; Rogers, Karyn L; Tor, Yitzhak.

J Mol Evol ; 90(5): 328-331, 2022 10.

Artigo em Inglês | MEDLINE | ID: mdl-35960316

5.

The Atlantic salmon genome provides insights into rediploidization.

Lien, Sigbjørn; Koop, Ben F; Sandve, Simen R; Miller, Jason R; Kent, Matthew P; Nome, Torfinn; Hvidsten, Torgeir R; Leong, Jong S; Minkley, David R; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne; Walenz, Brian; Hermansen, Russell A; von Schalburg, Kris; Rondeau, Eric B; Di Genova, Alex; Samy, Jeevan K A; Olav Vik, Jon; Vigeland, Magnus D; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas R; Yorke, James A; Nederbragt, Alexander J; Tooming-Klunderud, Ave; Jakobsen, Kjetill S; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J M; Jonassen, Inge; Maass, Alejandro; Omholt, Stig W; Davidson, William S.

Nature ; 533(7602): 200-5, 2016 05 12.

Artigo em Inglês | MEDLINE | ID: mdl-27088604

6.

Detecting Signatures of Positive Selection against a Backdrop of Compensatory Processes.

Chi, Peter B; Kosater, Westin M; Liberles, David A.

Mol Biol Evol ; 37(11): 3353-3362, 2020 11 01.

Artigo em Inglês | MEDLINE | ID: mdl-32895716

7.

Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond.

Selberg, Avery G A; Gaucher, Eric A; Liberles, David A.

J Mol Evol ; 89(3): 157-164, 2021 04.

Artigo em Inglês | MEDLINE | ID: mdl-33486547

8.

Detecting Selection on Segregating Gene Duplicates in a Population.

Stark, Tristan L; Kaufman, Rebecca S; Maltepes, Maria A; Chi, Peter B; Liberles, David A.

J Mol Evol ; 89(8): 554-564, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34341836

9.

Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates.

Northover, David E; Shank, Stephen D; Liberles, David A.

BMC Evol Biol ; 20(1): 24, 2020 02 11.

Artigo em Inglês | MEDLINE | ID: mdl-32046633

10.

Evolutionary Processes and Biophysical Mechanisms: Revisiting Why Evolved Proteins Are Marginally Stable.

Wilson, Amanda E; Kosater, Westin M; Liberles, David A.

J Mol Evol ; 88(5): 415-417, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-32385626

11.

Emerging Frontiers in the Study of Molecular Evolution.

Liberles, David A; Chang, Belinda; Geiler-Samerotte, Kerry; Goldman, Aaron; Hey, Jody; Kaçar, Betül; Meyer, Michelle; Murphy, William; Posada, David; Storfer, Andrew.

J Mol Evol ; 88(3): 211-226, 2020 04.

Artigo em Inglês | MEDLINE | ID: mdl-32060574

12.

2023 Zuckerkandl Prize.

Weisman, Caroline M; Minh, Bui Quang; Liberles, David A.

J Mol Evol ; 92(1): 1-2, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-38231224

13.

Protein evolution depends on multiple distinct population size parameters.

Platt, Alexander; Weber, Claudia C; Liberles, David A.

BMC Evol Biol ; 18(1): 17, 2018 02 08.

Artigo em Inglês | MEDLINE | ID: mdl-29422024

14.

A new parameter-rich structure-aware mechanistic model for amino acid substitution during evolution.

Chi, Peter B; Kim, Dohyup; Lai, Jason K; Bykova, Nadia; Weber, Claudia C; Kubelka, Jan; Liberles, David A.

Proteins ; 86(2): 218-228, 2018 02.

Artigo em Inglês | MEDLINE | ID: mdl-29178386

15.

2022 Zuckerkandl Prize.

Liberles, David A; Alvarez-Ponce, David; Meyer, Michelle M; Minh, Bui Quang; Silva, Joana C.

J Mol Evol ; 91(1): 1, 2023 02.

Artigo em Inglês | MEDLINE | ID: mdl-36609706

16.

ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability.

Arenas, Miguel; Weber, Claudia C; Liberles, David A; Bastolla, Ugo.

Syst Biol ; 66(6): 1054-1064, 2017 Nov 01.

Artigo em Inglês | MEDLINE | ID: mdl-28057858

17.

Characterizing the roles of changing population size and selection on the evolution of flux control in metabolic pathways.

Orlenko, Alena; Chi, Peter B; Liberles, David A.

BMC Evol Biol ; 17(1): 117, 2017 05 25.

Artigo em Inglês | MEDLINE | ID: mdl-28545395

18.

Analysis of a mechanistic Markov model for gene duplicates evolving under subfunctionalization.

Stark, Tristan L; Liberles, David A; Holland, Barbara R; O'Reilly, Malgorzata M.

BMC Evol Biol ; 17(1): 38, 2017 01 31.

Artigo em Inglês | MEDLINE | ID: mdl-28143390

19.

The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates.

Hermansen, Russell A; Oswald, Benjamin P; Knight, Stormy; Shank, Stephen D; Northover, David; Korunes, Katharine L; Michel, Stephen N; Liberles, David A.

J Mol Evol ; 85(1-2): 46-56, 2017 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-28795237

20.

Genetic simulation tools for post-genome wide association studies of complex diseases.

Chen, Huann-Sheng; Hutter, Carolyn M; Mechanic, Leah E; Amos, Christopher I; Bafna, Vineet; Hauser, Elizabeth R; Hernandez, Ryan D; Li, Chun; Liberles, David A; McAllister, Kimberly; Moore, Jason H; Paltoo, Dina N; Papanicolaou, George J; Peng, Bo; Ritchie, Marylyn D; Rosenfeld, Gabriel; Witte, John S; Gillanders, Elizabeth M; Feuer, Eric J.

Genet Epidemiol ; 39(1): 11-19, 2015 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-25371374

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